Skip to main content

Production and Transport of the Silencing Signal in Transgenic and Virus-Infected Plant Systems

  • Chapter
  • First Online:
Book cover Viral Transport in Plants

Part of the book series: Plant Cell Monographs ((CELLMONO,volume 7))

Abstract

In plants, RNA interference constitutes an important defense mechanism against viruses, transposons, and transgenes. Viruses, on the other hand, use suppressors to counteract silencing. In contrast to mammalian systems, silencing in plants spreads systemically through the whole organism. Since also viruses spread and consequently produce suppressors systemically, a race between silencing and virus replication occurs. Apparently, successful viruses win the race, but only until they reach the tissue around the meristem. There, the silencing mechanism is most capable by efficiently amplifying the silencing signal, bona fide 21-nt siRNA, leading to the well-known phenomenon of meristem exclusion.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Adenot X, Elmayan T, Lauressergues D, Boutet S, Bouché N, Gasciolli V, Vaucheret H (2006) DRB4-Dependent TAS3 trans-Acting siRNAs Control Leaf Morphology through AGO7. Curr Biol 16:927–932

    PubMed  CAS  Google Scholar 

  • Al-Kaff NS, Kreike MM, Covey SN, Pitcher R, Page AM, Dale PJ (2000) Plants rendered herbicide-susceptible by cauliflower mosaic virus-elicited suppression of a 35S promoter-regulated transgene. Nat Biotechnol 18:995–999

    PubMed  CAS  Google Scholar 

  • Akbergenov RZ, Si-Ammour A, Blevins T, Amin I, Kutter C, Vanderschuren H, Zhang P, Gruissem W, Meins F Jr, Hohn T, Pooggin MM (2006) Molecular characterization of geminivirus-derived small RNAs in different plant species. Nucleic Acids Res 34:462–471

    PubMed  CAS  Google Scholar 

  • Allen E, Xie Z, Gustafson AM, Carrington JC (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121:207–221

    PubMed  CAS  Google Scholar 

  • Amedeo P, Habu Y, Afsar K, Mittelsten SO, Paszkowski J (2000) Disruption of the plant gene MOM releases transcriptional silencing of methylated genes. Nature 405:203–206

    PubMed  CAS  Google Scholar 

  • Anandalakshmi R, Pruss GJ, Ge X, Marathe R, Mallory AC, Smith TH, Vance VB (1998) A viral suppressor of gene silencing in plants. Proc Natl Acad Sci USA 95:13079–13084

    PubMed  CAS  Google Scholar 

  • Anandalakshmi R, Marathe R, Ge X, Herr JM, Mallory A, Mau C, Pruss G, Bowman L, Vance VB (2000) A calmodulin-related protein from tobacco suppresses post-transcriptional gene silencing. Science 290:142–144

    PubMed  CAS  Google Scholar 

  • Balachandran S, Hull RJ, Martins RA, Vaadia Y, Lucas WJ (1997) Influence of Environmental Stress on Biomass Partitioning in Transgenic Tobacco Plants Expressing the Movement Protein of Tobacco Mosaic Virus. Plant Physiol 114:475–481

    PubMed  CAS  Google Scholar 

  • Baulcombe DC (2005) RNA silencing. Trends Biochem Sci 30:290–293

    PubMed  CAS  Google Scholar 

  • Baulcombe DC, Molnar A (2004) Crystal structure of p19 – a universal suppressor of RNA silencing. Trends Biochem Sci 29:279–281

    PubMed  CAS  Google Scholar 

  • Baumberger N, Baulcombe DC (2005) Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. Proc Natl Acad Sci USA 102:11928–11933

    PubMed  CAS  Google Scholar 

  • Bayne EH, Rakitina DV, Morozov SY, Baulcombe DC (2005) Cell-to-cell movement of potato potexvirus X is dependent on suppression of RNA silencing. Plant J 44:471–482

    PubMed  CAS  Google Scholar 

  • Bendahmane A, Kanyuka KV, Baulcombe DC (1997) High resolution and physical mapping of the Rx gene for extreme resistance to potato virus X in tetraploid potato. Theor Appl Genet 95:153–162

    CAS  Google Scholar 

  • Blevins T, Rajeswaran R, Shivaprasad P, Beknazariants D, Si-Ammour A, Park H-S, Vazquez F, Robertson D, Meins F Jr, Hohn T, Pooggin M (2006) Four plant dicers mediate viral small RNA biogenesis and DNA virus induced silencing. Nucleic Acids Res 34:6233–6246

    PubMed  CAS  Google Scholar 

  • Borsani O, Zhu J, Verslues PE, Sunkar R, Zhu JK (2005) Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 123:1279–1291

    PubMed  CAS  Google Scholar 

  • Bouche N, Lauressergues D, Gasciolli V, Vaucheret H (2006) An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs. EMBO J 25:3347–3356

    PubMed  CAS  Google Scholar 

  • Brigneti G, Voinnet O, Li WX, Ji LH, Ding SW, Baulcombe DC (1998) Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana. EMBO J 17:6739–6746

    PubMed  CAS  Google Scholar 

  • Brodersen P, Voinnet O (2006) The diversity of RNA silencing pathways in plants. Trends Genet 22:268–280

    PubMed  CAS  Google Scholar 

  • Brzeski J, Jerzmanowski A (2003) Deficient in DNA methylation 1 (DDM1) defines a novel family of chromatin-remodeling factors. J Biol Chem 278:823–828

    PubMed  CAS  Google Scholar 

  • Bucher E, Sijen T, de Haan P, Goldbach R, Prins M (2003) Negative-strand tospoviruses and tenuiviruses carry a gene for a suppressor of gene silencing at analogous genomic positions. J Virol 77:1329–1336

    PubMed  CAS  Google Scholar 

  • Bucher E, Hemmes H, de Haan P, Goldbach R, Prins M (2004) The influenza A virus NS1 protein binds small interfering RNAs and suppresses RNA silencing in plants. J Gen Virol 85:983–991

    PubMed  CAS  Google Scholar 

  • Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke MA, Jacobsen SE (2003) Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol 13:2212–2217

    PubMed  CAS  Google Scholar 

  • Cao X, Jacobsen SE (2002) Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc Natl Acad Sci USA 99:16491–16498

    PubMed  CAS  Google Scholar 

  • Cao X, Jacobsen SE (2002) Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol 9:1138–1144

    Google Scholar 

  • Cao X, Zhou P, Zhang X, Zhu S, Zhong X, Xiao Q, Ding B, Li Y (2005) Identification of an RNA silencing suppressor from a plant double-stranded RNA virus. J Virol 79:13018–13027

    PubMed  CAS  Google Scholar 

  • Canizares MC, Taylor KM, Lomonossoff GP (2004) Surface-exposed C-terminal amino acids of the small coat protein of Cowpea mosaic virus are required for suppression of silencing. J Gen Virol 85:3431–3435

    PubMed  CAS  Google Scholar 

  • Carrington JC (2005) Small RNAs and Arabidopsis. A fast forward look. Plant Physiol 13:565–566

    Google Scholar 

  • Chan SW, Zilberman D, Xie Z, Johansen LK, Carrington JC, Jacobsen SE (2004) RNA silencing genes control de novo DNA methylation. Science 303:1336

    PubMed  CAS  Google Scholar 

  • Chellappan P, Vanitharani R, Ogbe F, Fauquet CM (2005) Effect of temperature on geminivirus-induced RNA silencing in plants. Plant Physiol 138:1828–1841

    PubMed  CAS  Google Scholar 

  • Chellappan P, Vanitharani R, Fauquet CM (2005) MicroRNA-binding viral protein interferes with Arabidopsis development. Proc Natl Acad Sci USA 102:10381–10386 Chan SW, Henderson IR, Zhang X, Shah G, Chien JS, Jacobsen SE (2006) RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in Arabidopsis. PLoS Genet 2:e83

    Google Scholar 

  • Chen J, Li WX, Xie D, Peng JR, Ding SW (2004) Viral virulence protein suppresses RNA silencing-mediated defense but upregulates the role of microRNA in host gene expression. Plant Cell 16:1302–1313

    PubMed  CAS  Google Scholar 

  • Covey SN, Al-Kaff NS, Langara A, Turner DS (1997) Plants combat infection by gene silencing. Nature 385:781–782

    CAS  Google Scholar 

  • Covey SN, Al Kaff NS (2000) Plant DNA viruses and gene silencing. Plant Mol Biol 43:307–322

    PubMed  CAS  Google Scholar 

  • Cui X, Li G, Wang D, Hu D, Zhou X (2005) A Begomovirus DNAbeta-encoded protein binds DNA, functions as a suppressor of RNA silencing, and targets the cell nucleus. J Virol 79:10764–10775

    PubMed  CAS  Google Scholar 

  • Deleris A, Gallego-Bartolome J, Bao J, Kasschau KD, Carrington JC, Voinnet O (2006) A molecular framework for induction and suppression of antiviral RNA silencing in plants. Science 313:68–71

    PubMed  CAS  Google Scholar 

  • Delgadillo MO, Saenz P, Salvador B, Garcia JA, Simon-Mateo C (2004) Human influenza virus NS1 protein enhances viral pathogenicity and acts as an RNA silencing suppressor in plants. J Gen Virol 85:993–999

    PubMed  CAS  Google Scholar 

  • Dunoyer P, Pfeffer S, Fritsch C, Hemmer O, Voinnet O, Richards KE (2002) Identification, subcellular localization and some properties of a cysteine-rich suppressor of gene silencing encoded by peanut clump virus. Plant J 29:555–567

    PubMed  CAS  Google Scholar 

  • Dunoyer P, Himber C, Voinnet O (2005) DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal. Nat Genet 37:1356–1360

    PubMed  CAS  Google Scholar 

  • Dunoyer P, Lecellier CH, Parizotto EA, Himber C, Voinnet O (2004) Probing the microRNA and small interfering RNA pathways with virus-encoded suppressors of RNA silencing. Plant Cell 16:1235–1250

    PubMed  CAS  Google Scholar 

  • Dunoyer P, Voinnet O (2005) The complex interplay between plant viruses and host RNA-silencing pathways. Curr Opin Plant Biol 8:415–423

    PubMed  CAS  Google Scholar 

  • Ebhardt HA, Thi EP, Wang MB, Unrau PJ (2005) Extensive 3′ modification of plant small RNAs is modulated by helper component-proteinase expression. Proc Natl Acad Sci USA 102:13398–13403

    PubMed  CAS  Google Scholar 

  • Ekwall K (2004) The RITS complex-A direct link between small RNA and heterochromatin. Mol Cell 13:304–305

    PubMed  CAS  Google Scholar 

  • English JJ, Mueller E, Baulcombe DC (1996) Suppression of virus accumulation in transgenic plants exhibiting silencing of nuclear genes. Plant Cell 8:179–188

    PubMed  CAS  Google Scholar 

  • Fitchen JH, Beachy RN (1993) Genetically engineered protection against viruses in transgenic plants. Annu Rev Microbiol 47:739–763

    PubMed  CAS  Google Scholar 

  • Gasciolli V, Mallory AC, Bartel DP, Vaucheret H (2005) Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr Biol 15:1494–1500

    PubMed  CAS  Google Scholar 

  • Gustafson AM, Allen E, Givan S, Smith D, Carrington JC, Kasschau KD (2005) ASRP: the Arabidopsis Small RNA Project Database. Nucleic Acids Res 33:D637–D640

    PubMed  CAS  Google Scholar 

  • Habu Y, Mathieu O, Tariq M, Probst AV, Smathajitt C, Zhu T, Paszkowski J (2006) Epigenetic regulation of transcription in intermediate heterochromatin. EMBO Rep 7:1279–1284

    PubMed  CAS  Google Scholar 

  • Hamilton AJ, Baulcombe DC (1999) A novel species of small antisense RNA in post-transcriptional gene silencing. Science 286:950–952

    PubMed  CAS  Google Scholar 

  • Hamilton A, Voinnet O, Chappell L, Baulcombe D (2002) Two classes of short interfering RNA in RNA silencing. EMBO J 21:4671–4679

    PubMed  CAS  Google Scholar 

  • Han MH, Goud S, Song L, Fedoroff N (2004) The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation. Proc Natl Acad Sci USA 101:1093–1098

    PubMed  CAS  Google Scholar 

  • He B (2006) Viruses, endoplasmic reticulum stress, and interferon responses. Cell Death Differ 13:393–403

    PubMed  CAS  Google Scholar 

  • Heinlein M, Epel BL (2004) Macromolecular transport and signaling through plasmodesmata. Int Rev Cytol 235:93–164

    Article  PubMed  CAS  Google Scholar 

  • Henderson IR, Zhang X, Lu C, Johnson L, Meyers BC, Green PJ, Jacobsen SE (2006) Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet 38:721–725

    PubMed  CAS  Google Scholar 

  • Herr AJ, Jensen MB, Dalmay T, Baulcombe DC (2005) RNA polymerase IV directs silencing of endogenous DNA. Science 308:118–120

    PubMed  CAS  Google Scholar 

  • Himber C, Dunoyer P, Moissiard G, Ritzenthaler C, Voinnet O (2003) Transitivity-dependent and -independent cell-to-cell movement of RNA silencing. EMBO J 22:4523–4533

    PubMed  CAS  Google Scholar 

  • Hiraguri A et al. (2005) Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana. Plant Mol Biol 57:173–188

    PubMed  CAS  Google Scholar 

  • Huettel B, Kanno T, Daxinger L, Aufsatz W, Matzke AJ, Matzke M (2006) Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis. EMBO J 25:2828–2836

    PubMed  CAS  Google Scholar 

  • Hunter C, Sun H, Poethig RS (2003) The Arabidopsis heterochronic gene ZIPPY is an ARGONAUTE family member. Curr Biol 13:1734–1739

    PubMed  CAS  Google Scholar 

  • Jones-Rhoades MW, Bartel DP, Bartel B (2006) MicroRNAs and their regulatory roles in plants. Annu Rev Plant Biol 57:19–53

    PubMed  CAS  Google Scholar 

  • Kalantidis K, Tsagris M, Tabler M (2006) Spontaneous short-range silencing of a GFP transgene in Nicotiana benthamiana is possibly mediated by small quantities of siRNA that do not trigger systemic silencing. Plant J 45:1006–1016

    Article  PubMed  CAS  Google Scholar 

  • Kanno T, Mette MF, Kreil DP, Aufsatz W, Matzke M, Matzke AJ (2004) Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation. Curr Biol 14:801–805

    PubMed  CAS  Google Scholar 

  • Kanno T, Huettel B, Mette MF, Aufsatz W, Jaligot E, Daxinger L, Kreil DP, Matzke M, Matzke AJ (2005) Atypical RNA polymerase subunits required for RNA-directed DNA methylation. Nat Genet 37:761–765

    PubMed  CAS  Google Scholar 

  • Kasschau KD, Carrington JC (1998) A counterdefensive strategy of plant viruses: suppression of posttranscriptional gene silencing. Cell 95:461–470

    PubMed  CAS  Google Scholar 

  • Katze MG (2002) Interferon, PKR, virology, and genomics: what is past and what is next in the new millennium? J Interferon Cytokine Res 22:283–286

    PubMed  CAS  Google Scholar 

  • Keene KM, Foy BD, Sanchez-Vargas I, Beaty BJ, Blair CD, Olson KE (2004) RNA interference acts as a natural antiviral response to O'nyong-nyong virus (Alphavirus; Togaviridae) infection of Anopheles gambiae. Proc Natl Acad Sci USA 101:17240–17245

    PubMed  CAS  Google Scholar 

  • Kubota K, Tsuda S, Tamai A, Meshi T (2003) Tomato mosaic virus replication protein suppresses virus-targeted posttranscriptional gene silencing. J Virol 77:11016–11026

    PubMed  CAS  Google Scholar 

  • Kumagai MH, Donson J, Dellacioppa G, Harvey D, Hanley K, Grill LK (1995) Cytoplasmic inhibition of carotenoid biosynthesis with virus-derived RNA. Proc Natl Acad Sci USA 92:1679–1683

    PubMed  CAS  Google Scholar 

  • Kurihara Y, Takashi Y, Watanabe Y (2006) The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis. RNA 12:206–212

    PubMed  CAS  Google Scholar 

  • Kurihara Y, Watanabe Y (2004) Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions. Proc Natl Acad Sci USA 101:12753–12758

    PubMed  CAS  Google Scholar 

  • Lakatos L, Szittya G, Silhavy D, Burgyan J (2004) Molecular mechanism of RNA silencing suppression mediated by p19 protein of tombusviruses. EMBO J 23:876–884

    PubMed  CAS  Google Scholar 

  • Lakatos L, Csorba T, Pantaleo V, Chapman EJ, Carrington JC, Liu YP, Dolja VV, Fernández-Calvino L, López-Moya JJ, Burgyán J (2006) Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors. EMBO J 25:2768–2780

    PubMed  CAS  Google Scholar 

  • Li CF, Pontes O, El Shami M, Henderson IR, Bernatavichute YV, Chan SW, Lagrange T, Pikaard CS, Jacobsen SE (2006) An ARGONAUTE4-Containing Nuclear Processing Center Colocalized with Cajal Bodies in Arabidopsis thaliana. Cell 126:93–106

    PubMed  CAS  Google Scholar 

  • Li J, Yang Z, Yu B, Liu J, Che X (2005) Methylation protects miRNAs and siRNAs from a 3′-end uridylation activity in Arabidopsis. Curr Biol 15:1501–1507

    PubMed  CAS  Google Scholar 

  • Lindbo JA, Dougherty WG (2005) Plant pathology and RNAi: a brief history. Annu Rev Phytopathol 43:191–204

    PubMed  CAS  Google Scholar 

  • Lindbo JA, Dougherty WG (1992) Untranslatable transcripts of the tobacco etch virus coat protein gene sequence can interfere with tobacco etch virus replication in transgenic plants and protoplasts. Virology 189:725–733

    PubMed  CAS  Google Scholar 

  • Lindroth AM, Shultis D, Jasencakova Z, Fuchs J, Johnson L, Schubert D, Patnaik D, Pradhan S, Goodrich J, Schubert I, Jenuwein T, Khorasanizadeh S, Jacobsen SE (2004) Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. EMBO J 23:4286–4296

    PubMed  CAS  Google Scholar 

  • Liu L, Grainger J, Canizares MC, Angell SM, Lomonossoff GP (2004) Cowpea mosaic virus RNA-1 acts as an amplicon whose effects can be counteracted by a RNA-2-encoded suppressor of silencing. Virology 323:37–48

    PubMed  CAS  Google Scholar 

  • Llave C, Kasschau KD, Rector MA, Carrington JC (2002) Endogenous and silencing-associated small RNAs in plants. Plant Cell 14:1605–1619

    PubMed  CAS  Google Scholar 

  • Lu R, Folimonov A, Shintaku M, Li WX, Falk BW, Dawson WO, Ding SW (2004) Three distinct suppressors of RNA silencing encoded by a 20-kb viral RNA genome. Proc Natl Acad Sci USA 101:15742–15747

    PubMed  CAS  Google Scholar 

  • Lu S, Cullen BR (2004) Adenovirus VA1 noncoding RNA can inhibit small interfering RNA and MicroRNA biogenesis. J Virol 78:12868–12876

    PubMed  CAS  Google Scholar 

  • Lu C, Fedoroff N (2000) A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin. Plant Cell 12:2351–2366

    PubMed  CAS  Google Scholar 

  • Lu C, Fedoroff N (2000) A Mutation in the Arabidopsis HYL1 Gene Encoding a dsRNA Binding Protein Affects Responses to Abscisic Acid, Auxin, and Cytokinin. Plant Cell 12:2351–2365

    PubMed  CAS  Google Scholar 

  • Mallory AC, Parks G, Endres MW, Baulcombe DC, Bowman LH, Pruss GJ, Vance VB (2002) The amplicon-plus system for high-level expression of transgenes in plants. Nat Biotechnol 20:622–625

    PubMed  CAS  Google Scholar 

  • Merai Z, Kerenyi Z, Kertesz S, Magna M, Lakatos L, Silhavy D (2006) Double-stranded RNA binding may be a general plant RNA viral strategy to suppress RNA silencing. J Virol 80:5747–5756

    PubMed  CAS  Google Scholar 

  • Mittelsten-Scheid O, Afsar K, Paszkowski J (1998) Release of epigenetic gene silencing by trans-acting mutations in Arabidopsis. Proc Natl Acad Sci USA 95:632–637

    PubMed  CAS  Google Scholar 

  • Mittelsten SO, Probst AV, Afsar K, Paszkowski J (2002) Two regulatory levels of transcriptional gene silencing in Arabidopsis. Proc Natl Acad Sci USA 99:13659–13662

    Google Scholar 

  • Mlotshwa S, Voinnet O, Mette MF, Matzke MA, Vaucheret H, Ding SW, Pruss G, Vance VB (2002) RNA silencing and the mobile silencing signal. Plant Cell 14(Suppl):289–301

    Google Scholar 

  • Moissiard G, Voinnet O (2004) Viral suppression of RNA silencing in plants. Mol Plant Pathol 5:71–82

    CAS  PubMed  Google Scholar 

  • Mourrain P, Beclin C, Elmayan T, Feuerbach F, Godon C, Morel JB, Jouette D, Lacombe AM, Nikic S, Picault N, Remoue K, Sanial M, Vo TA, Vaucheret H (2000) Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance. Cell 101:533–542

    PubMed  CAS  Google Scholar 

  • Muangsan N, Beclin C, Vaucheret H, Robertson D (2004) Geminivirus VIGS of endogenous genes requires SGS2/SDE1 and SGS3 and defines a new branch in the genetic pathway for silencing in plants. Plant J 38:1004–1014

    PubMed  CAS  Google Scholar 

  • Noreen F, Akbergenov R, Hohn T, Richert-Pöggeler KR (2007) Distinct expression of endogenous Petunia vein clearing virus and the DNA transposon dTph1 in two Petunia hybrida lines is correlated with differences in histone modification and siRNA production. Plant J (in press)

    Google Scholar 

  • Onodera Y, Haag JR, Ream T, Nunes PC, Pontes O, Pikaard CS (2005) Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 120:613–622

    PubMed  CAS  Google Scholar 

  • Park MY, Wu G, Gonzalez-Sulser A, Vaucheret H, Poethig RS (2005) Nuclear processing and export of microRNAs in Arabidopsis. Proc Natl Acad Sci USA 102:3691–3696

    PubMed  CAS  Google Scholar 

  • Palauqui JC, Elmayan T, Pollien JM, Vaucheret H (1997) Systemic acquired silencing: transgene-specific post-transcriptional silencing is transmitted by grafting from silenced stocks to non-silenced scions [published erratum in EMBO J 1998 Apr 1;17(7):2137]. EMBO J 16:4738–4745

    PubMed  CAS  Google Scholar 

  • Papenbrock J, Pfundel E, Mock HP, Grimm B (2000) Decreased and increased expression of the subunit CHL I diminishes Mg chelatase activity and reduces chlorophyll synthesis in transgenic tobacco plants. Plant J 22:155–164

    PubMed  CAS  Google Scholar 

  • Peele C, Jordan CV, Muangsan N, Turnage M, Egelkrout E, Eagle P, Hanley-Bowdoin L, Robertson D (2001) Silencing of a meristematic gene using geminivirus-derived vectors. Plant J 27:357–366

    PubMed  CAS  Google Scholar 

  • Pelissier T, Thalmeir S, Kempe D, Sanger HL, Wassenegger M (1999) Heavy de novo methylation at symmetrical and non-symmetrical sites is a hallmark of RNA-directed DNA methylation. Nucleic Acids Res 27:1625–1634

    PubMed  CAS  Google Scholar 

  • Peragine A, Yoshikawa M, Wu G, Albrecht HL, Poethig RS (2004) SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes Dev 18:2368–2379

    PubMed  CAS  Google Scholar 

  • Petersen BO, Albrechtsen M (2005) Evidence implying only unprimed RdRP activity during transitive gene silencing in plants. Plant Mol Biol 58:575–583

    PubMed  CAS  Google Scholar 

  • Pfeffer S, Dunoyer P, Heim F, Richards KE, Jonard G, Ziegler-Graff V (2002) P0 of beet Western yellows virus is a suppressor of posttranscriptional gene silencing. J Virol 76:6815–6824

    PubMed  CAS  Google Scholar 

  • Pillai RS, Bhattacharyya SN, Artus CG, Zoller T, Cougot N, Basyuk E, Bertrand E, Filipowicz W (2005) Inhibition of translational initiation by Let-7 MicroRNA in human cells. Science 309:1573–1576

    PubMed  CAS  Google Scholar 

  • Pontes O, Li CF, Nunes PC, Haag J, Ream T, Vitins A, Jacobsen SE, Pikaard CS (2006) The Arabidopsis Chromatin-Modifying Nuclear siRNA Pathway Involves a Nucleolar RNA Processing Center. Cell 126:79–92

    PubMed  CAS  Google Scholar 

  • Pontier D, Yahubyan G, Vega D, Bulski A, Saez-Vasquez J, Hakimi MA, Lerbs-Mache S, Colot V, Lagrange T (2005) Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes Dev 19:2030–2040

    PubMed  CAS  Google Scholar 

  • Pooggin M, Shivaprasad PV, Veluthambi K, Hohn T (2003) RNAi targeting of DNA virus in plants. Nat Biotechnol 21:131–132

    PubMed  CAS  Google Scholar 

  • Probst AV, Fagard M, Proux F, Mourrain P, Boutet S, Earley K, Lawrence RJ, Pikaard CS, Murfett J, Furner I, Vaucheret H, Mittelsten SO (2004) Arabidopsis histone deacetylase HDA6 is required for maintenance of transcriptional gene silencing and determines nuclear organization of rDNA repeats. Plant Cell 16:1021–1034

    PubMed  CAS  Google Scholar 

  • Qi Y, Denli A, Hannon G (2005) Biochemical specialization within Arabidopsis RNA silencing pathways. Molecular Cell 19:421–428

    PubMed  CAS  Google Scholar 

  • Qi Y, He X, Wang XJ, Kohany O, Jurka J, Hannon GJ (2006) Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation. Nature 443:1008–1012

    PubMed  Google Scholar 

  • Qu F, Ren T, Morris TJ (2003) The coat protein of turnip crinkle virus suppresses posttranscriptional gene silencing at an early initiation step. J Virol 77:511–522

    PubMed  CAS  Google Scholar 

  • Qu F, Ye X, Hou G, Sato S, Clemente TE, Morris TJ (2005) RDR6 has a broad-spectrum but temperature-dependent antiviral defense role in Nicotiana benthamiana. J Virol 79:15209–15217

    PubMed  CAS  Google Scholar 

  • Rand TA, Petersen S, Du F, Wang X (2005) Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation. Cell 123:621–629

    PubMed  CAS  Google Scholar 

  • Reed JC, Kasschau KD, Prokhnevsky AI, Gopinath K, Pogue GP, Carrington JC, Dolja VV (2003) Suppressor of RNA silencing encoded by Beet yellows virus. Virology 306:203–209

    PubMed  CAS  Google Scholar 

  • Richert-Poeggeler KR, Noreen F, Schwarzacher T, Harper G, Hohn T (2003) Induction of infectious petunia vein clearing (pararetro) virus from endogenous provirus in petunia. EMBO J 22:4836–4845

    CAS  Google Scholar 

  • Roth BM, Pruss GJ, Vance VB (2004) Plant viral suppressors of RNA silencing. Virus Res 102:97–108

    PubMed  CAS  Google Scholar 

  • Ruiz-Medrano R, Xonocosle-Cazares B, Kragler F (2004) The plasmodesmatal transport pathway for homeotic proteins, silencing signals and virases. Curr Opin Plant Biol 7:641–650

    PubMed  CAS  Google Scholar 

  • Sanford JC, Johnston SA (1985) The concept of parasite derived resistance. J Theor Biol 113:395–405

    Google Scholar 

  • Sarmiento C, Nigul L, Kazantseva J, Buschmann M, Truve E (2006) AtRLI2 is an endogenous suppressor of RNA silencing. Plant Mol Biol 61:153–163

    PubMed  CAS  Google Scholar 

  • Schwach F, Vaistij FE, Jones L, Baulcombe DC (2005) An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal. Plant Physiol 138:1842–1852

    PubMed  CAS  Google Scholar 

  • Shi BJ, Ding SW and Symons RH (1997) In vivo expression of an overlapping gene encoded by the cucumoviruses. J Gen Virol 78:237–241

    PubMed  CAS  Google Scholar 

  • Shivaprasad PV, Akbergenov R, Trinks D, Rajeswaran R, Veluthambi K, Hohn T, Pooggin MM (2005) Promoters, transcripts, and regulatory proteins of Mungbean yellow mosaic geminivirus. J Virol 79:8149–8163

    PubMed  CAS  Google Scholar 

  • Silhavy D, Burgyan J (2004) Effects and side-effects of viral RNA silencing suppressors on short RNAs. Trends Plant Sci 9:76–83

    PubMed  CAS  Google Scholar 

  • Szittya G, Silhavy D, Molnar A, Havelda Z, Lovas A, Lakatos L, Banfalvi Z, Burgyan J (2003) Low temperature inhibits RNA silencing-mediated defence by the control of siRNA generation. EMBO J 22:633–640

    PubMed  CAS  Google Scholar 

  • Takeda A, Sugiyama K, Nagano H, Mori M, Kaido M, Mise K, Tsuda S, Okuno T (2002) Identification of a novel RNA silencing suppressor, NSs protein of Tomato spotted wilt virus. FEBS Lett 532:75–79

    PubMed  CAS  Google Scholar 

  • Thomas CL, Leh V, Lederer C, Maule AJ (2003) Turnip crinkle virus coat protein mediates suppression of RNA silencing in Nicotiana benthamiana. Virology 306:33–41

    PubMed  CAS  Google Scholar 

  • Tomari Y, Du T, Haley B, Schwarz DS, Bennett R, Cook HA, Koppetsch BS, Theurkauf WE, Zamore PD (2004) RISC assembly defects in the Drosophila RNAi mutant armitage. Cell 116:831–841

    PubMed  CAS  Google Scholar 

  • Trinks D, Rajeswaran R, Shivaprasad PV, Akbergenov R, Oakeley EJ, Veluthambi K, Hohn T, Pooggin MM (2005) Suppression of RNA silencing by a geminivirus nuclear protein, AC2, correlates with transactivation of host genes. J Virol 79:2517–2527

    PubMed  CAS  Google Scholar 

  • Valle RP, Skrzeczkowski J, Morch MD, Joshi RL, Gargouri R, Drugeon G, Boyer JC, Chapeville F, Haenni AL (1988). Plant viruses and new perspectives in cross-protection. Biochimie 70:695–703

    PubMed  CAS  Google Scholar 

  • Vaucheret H (2005) RNA polymerase IV and transcriptional silencing. Nat Genet 37:659–660

    PubMed  CAS  Google Scholar 

  • Vaistij FE, Jones L, Baulcombe DC (2002) Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase. Plant Cell 14:857–867

    PubMed  CAS  Google Scholar 

  • Vanitharani R, Chellappan P, Pita JS, Fauquet CM (2004) Differential roles of AC2 and AC4 of cassava geminiviruses in mediating synergism and suppression of posttranscriptional gene silencing. J Virol 78:9487–9498

    PubMed  CAS  Google Scholar 

  • Vargason JM, Szittya G, Burgyan J, Tanaka Hall TM (2003) Size selective recognition of siRNA by an RNA silencing suppressor. Cell 115:799–811

    PubMed  CAS  Google Scholar 

  • Vaughn MW, Martienssen RA (2005) Finding the right template: RNA Pol IV, a plant-specific RNA polymerase. Mol Cell 17:754–756

    PubMed  CAS  Google Scholar 

  • Vazquez F, Gasciolli V, Crete P, Vaucheret H (2004) The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing. Curr Biol 14:346–351

    PubMed  CAS  Google Scholar 

  • Vazquez F, Vaucheret H, Rajagopalan R, Lepers C, Gasciolli V, Mallory AC, Hilbert JL, Bartel DP, Crete P (2004) Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol Cell 16:69–79

    PubMed  CAS  Google Scholar 

  • Voinnet O (2005a) Induction and suppression of RNA silencing:insights from viral infections. Nat Rev Genet 6:206–220

    PubMed  CAS  Google Scholar 

  • Voinnet O (2005b) Non-cell autonomous RNA silencing. FEBS Lett 579:5858–5871

    PubMed  CAS  Google Scholar 

  • Voinnet O, Baulcombe DC (1997) Systemic signalling in gene silencing. Nature 389:553

    PubMed  CAS  Google Scholar 

  • Voinnet O, Lederer C, Baulcombe DC (2000) A viral movement protein prevents spread of the gene silencing signal in Nicotiana benthamiana. Cell 103:157–167

    PubMed  CAS  Google Scholar 

  • Voinnet O, Pinto YM, Baulcombe DC (1999) Suppression of gene silencing: a general strategy used by diverse DNA and RNA viruses of plants. Proc Natl Acad Sci USA 96:14147–14152

    PubMed  CAS  Google Scholar 

  • Voinnet O, Vain P, Angell S, Baulcombe DC (1998) Systemic spread of sequence-specific transgene RNA degradation in plants is initiated by localized introduction of ectopic promoterless DNA. Cell 95:177–187

    PubMed  CAS  Google Scholar 

  • Wang MB, Bian XY, Wu LM, Liu LX, Smith NA, Isenegger D, Wu RM, Masuta C, Vance VB, Watson JM, Rezaian A, Dennis ES, Waterhouse PM (2004) On the role of RNA silencing in the pathogenicity and evolution of viroids and viral satellites. Proc Natl Acad Sci USA 101:3275–3280

    PubMed  CAS  Google Scholar 

  • Wang MB, Metzlaff M (2005) RNA silencing and antiviral defense in plants. Curr Opin Plant Biol 8:216–222

    PubMed  Google Scholar 

  • Wassenegger M (2005) The role of the RNAi machinery in heterochromatin formation. Cell 122:13–16

    PubMed  CAS  Google Scholar 

  • Wassenegger M, Heimes S, Riedel L, Sanger HL (1994) RNA-directed de novo methylation of genomic sequences in plants. Cell 76:567–576

    PubMed  CAS  Google Scholar 

  • Wassenegger M, Krczal G (2006) Nomenclature and functions of RNA-directed RNA polymerases. Trends Plant Sci 11:142–151

    PubMed  CAS  Google Scholar 

  • Wilkins C, Dishongh R, Moore SC, Whitt MA, Chow M, Machaca K (2005) RNA interference is an antiviral defence mechanism in Caenorhabditis elegans. Nature 436:1044–1047

    PubMed  CAS  Google Scholar 

  • Wille AC, Lucas WJ (1984) Ultrastructural and histochemical studies on guard cells. Planta 160:129–42

    Google Scholar 

  • Xie M, He Y, Gan S (2001) Bidirectionalization of polar promoters in plants. Nat Biotechnol 19:677–679

    PubMed  CAS  Google Scholar 

  • Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC (2004) Genetic and functional diversification of small RNA pathways in plants. PLoS Biol 2:E104

    PubMed  Google Scholar 

  • Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC (2005a) Expression of Arabidopsis miRNA genes. Plant Physiol 138:2145–2154

    PubMed  CAS  Google Scholar 

  • Xie Z, Allen E, Wilken A, Carrington JC (2005b) DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana. Proc Natl Acad Sci USA 102:12984–12989

    PubMed  CAS  Google Scholar 

  • Yang SJ, Carter SA, Cole AB, Cheng NH, Nelson RS (2004) A natural variant of a host RNA-dependent RNA polymerase is associated with increased susceptibility to viruses by Nicotiana benthamiana. Proc Natl Acad Sci USA 101:6297–6302

    PubMed  CAS  Google Scholar 

  • Yang Z, Ebright YW, Yu B, Chen X (2006) HEN1 recognizes 21–24 nt small RNA duplexes and deposits a methyl group onto the 2′ OH of the 3′ terminal nucleotide. Nucleic Acids Res 34:667–675

    PubMed  CAS  Google Scholar 

  • Ye K, Malinina L, Patel DJ (2003) Recognition of small interfering RNA by a viral suppressor of RNA silencing. Nature 426:874–878

    PubMed  CAS  Google Scholar 

  • Ye K, Patel DJ (2005) RNA silencing suppressor p21 of Beet yellows virus forms an RNA binding octameric ring structure. Structure 13:1375–1384

    PubMed  CAS  Google Scholar 

  • Yelina NE, Savenkov EI, Solovyev AG, Morozov SY, Valkonen JP (2002) Long-distance movement, virulence, and RNA silencing suppression controlled by a single protein in hordei- and potyviruses: complementary functions between virus families. J Virol 76:12981–12991

    PubMed  CAS  Google Scholar 

  • Yoo BC, Kragler F, Varkonyi-Gasic E, Haywood V, Archer-Evans S, Lee YM, Lough TJ, Lucas WJ (2004) A systemic small RNA signaling system in plants. Plant Cell 16:1979–2000

    PubMed  CAS  Google Scholar 

  • Yoshikawa M, Peragine A, Park MY, Poethig RS (2005) A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev 19:2164–2175

    PubMed  CAS  Google Scholar 

  • Yu B, Yang Z, Li J, Minakhina S, Yang M, Padgett RW, Steward R, Chen X (2005) Methylation as a crucial step in plant microRNA biogenesis. Science 307:932–935

    PubMed  CAS  Google Scholar 

  • Zamore PD, Haley B (2005) Ribo-gnome: the big world of small RNAs. Science 3092:1519–1524

    Google Scholar 

  • Zhang X, Yuan Y-R, Pei Y, Lin S-S, Tuschl T, Patel DJ, Chua N-H (2007) Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense. Genesdev 20:3255–3268

    Google Scholar 

  • Zilberman D, Cao X, Johansen LK, Xie Z, Carrington JC, Jacobsen SE (2004) Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Curr Biol 14:1214–1220

    PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Thomas Hohn .

Editor information

Elisabeth Waigmann Manfred Heinlein

Rights and permissions

Reprints and permissions

Copyright information

© 2007 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Hohn, T., Akbergenov, R., Pooggin, M.M. (2007). Production and Transport of the Silencing Signal in Transgenic and Virus-Infected Plant Systems. In: Waigmann, E., Heinlein, M. (eds) Viral Transport in Plants. Plant Cell Monographs, vol 7. Springer, Berlin, Heidelberg. https://doi.org/10.1007/7089_2006_103

Download citation

Publish with us

Policies and ethics