Abstract
Aim of the study was to characterize KPC-producing Escherichia coli (KPC-Ec) clinical isolates among a Northern Italy Long-Term Care and Rehabilitation Facility (LTCRF) residents. Thirteen consecutive non repeated MDR E. coli isolates showing ertapenem Minimum Inhibitory Concentrations (MICs) >0.5 mg/L, collected during the period March 2011 – May 2013 from ASP “Redaelli” inpatients, were investigated. The bla KPC/CTX-M/SHV/TEM/OXA genes were identified by PCR and sequencing. KPC-Ec isolates underwent phylotyping, Pulsed-Field Gel Electrophoresis (PFGE), multilocus sequence typing (MLST) and repetitive sequence-based PCR (rep-PCR) profiling. Incompatibility groups analysis and conjugation were also performed. Eleven out of 13 isolates, resulted bla KPC-type positive, were consistently resistant to third generation cephalosporins, fluoroquinolones and trimethoprim-sulphametoxazole (84.6 %), retaining susceptibility to colistin (EUCAST guidelines). At least n = 4/11 of KPC-Ec patients received ≥48 h of meropenem therapy. Sequencing identified 9 bla KPC-2, 1 bla KPC-3 and 1 bla KPC-8 determinants. KPC-Ec plasmids belonged to IncF group (FIIk replicon); conjugation confirmed bla KPC/TEM-1/OXA-9 genes transferability for 10 KPC-Ec. Although three pulsotypes (A, B, C) were identified, all KPC-Ec belonged to phylogenetic group B2. Clone B (B-B5) caused an outbreak of infection involving nine inpatients at five wards. Rep-PCR showed relatedness for seven representative KPC-Ec isolates. Here we report a LTCRF outbreak caused by a ST131-B2 E. coli associated with bla KPC-2 and bla KPC-8 genes, and the emergence of the new ST3948. Elderly people with co-morbidities are at risk for ST131 colonization. KPC-Ec clones local monitoring appears essential both to avoid their spreading among healthcare settings, and to improve therapeutic choices for LTCRF residents.
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References
Accogli M, Giani T, Monaco M et al (2014) Emergence of Escherichia coli ST131 sub-clone H30 producing VIM-1 and KPC-3 carbapenemases, Italy. J Antimicrob Chemother 69(8):2293–2296. doi:10.1093/jac/dku132
Almeida AC, de Sá Cavalcanti FL, Vilela MA et al (2012) Escherichia coli ST502 and Klebsiella pneumoniae ST11 sharing an IncW plasmid harbouring the bla(KPC-2) gene in an Intensive Care Unit patient. Int J Antimicrob Agents 40(4):374–376
Arnoldo L, Migliavacca R, Regattin L et al (2013) Prevalence of urinary colonization by extended spectrum-beta-lactamase Enterobacteriaceae among catheterized inpatients in Italian long term care facilities. BMC Infect Dis 13:124. doi:10.1186/1471-2334-13-124
Baraniak A, Grabowska A, Izdebski R et al (2011) Molecular characteristics of KPC-producing Enterobacteriaceae at the early stage of their dissemination in Poland, 2008–2009. Antimicrob Agents Chemother 55(12):5493–5499
Basic Local Alignment Search Tool. http://blast.ncbi.nlm.nih.gov/Blast.cgi
Brisse S, Diancourt L, Laouenan C et al (2012) Phylogenetic distribution of CTX-M- and non-extended-spectrum-beta-lactamase-producing Escherichia coli isolates: group B2 isolates, except clone ST131, rarely produce CTX-M enzymes. J Clin Microbiol 50:2974–2981
Brolund A, Hæggman S, Edquist PJ et al (2010) The DiversiLab system versus pulsed-field gel electrophoresis: characterisation of extended spectrum β-lactamase producing Escherichia coli and Klebsiella pneumoniae. J Microbiol Methods 83(2):224–230. doi:10.1016/j.mimet.2010.09.004
Burke L, Humphreys H, Fitzgerald-Hughes D (2012) The revolving door between hospital and community: extended-spectrum beta-lactamase producing Escherichia coli in Dublin. J Hosp Infect 81:192–198
Cai JC, Zhang R, Hu YY et al (2014) Emergence of Escherichia coli sequence type 131 isolates producing KPC-2 carbapenemase in China. Antimicrob Agents Chemother 58(2):1146–1152. doi:10.1128/AAC.00912-13
Carattoli A, Bertini A, Villa L et al (2005) Identification of plasmids by PCR-based replicon typing. J Microbiol Methods 63(3):219–228
Clermont O, Bonacorsi S, Bingen E (2000) Rapid and simple determination of the Escherichia coli phylogenetic group. Appl Environ Microbiol 66(10):4555–4558
Clermont O, Dhanji H, Upton M et al (2009) Rapid detection of the O25b-ST131 clone of Escherichia coli encompassing the CTX-M-15-producing strains. J Antimicrob Chemother 64(2):274–277
Colomer-Lluch M, Mora A, Lopez C et al (2013) Detection of quinolone-resistant Escherichia coli isolates belonging to clonal groups O25b:H4-B2-ST131 and O25b:H4-D-ST69 in raw sewage and river water in Barcelona, Spain. J Antimicrob Chemother 68:758–765
Coque TM, Novais A, Carattoli A et al (2008) Dissemination of clonally related Escherichia coli strains expressing extended-spectrum beta-lactamase CTX-M-15. Emerg Infect Dis 14(2):195–200
Deshpande LM, Rhomberg PR, Sader HS et al (2006) Emergence of serine carbapenemases (KPC and SME) among clinical strains of Enterobacteriaceae isolated in the United States Medical Centers: report from the MYSTIC Program (1999–2005). Diagn Microbiol Infect Dis 56(4):367–372
European Committee on Antimicrobial Susceptibility Testing. http://eucast.org/clinical_breakpoints
Ghodousi A, Bonura C, Di Noto AM et al (2015) Extended-spectrum ß-lactamase, AmpC-producing, and fluoroquinolone-resistant Escherichia coli in retail broiler chicken meat, Italy. Foodborne Pathog Dis 12(7):619–625. doi:10.1089/fpd.2015.1936
Giakkoupi P, Pappa O, Polemis M et al (2009) Emerging Klebsiella pneumoniae isolates coproducing KPC-2 and VIM-1 carbapenemases. Antimicrob Agents Chemother 53(9):4048–4050
Giani T, Pini B, Arena F et al (2013) Epidemic diffusion of KPC carbapenemase-producing Klebsiella pneumoniae in Italy: results of the first countrywide survey, 15 May to 30 June 2011. Euro Surveill 18(22)
Gijón D, Curiao T, Baquero F et al (2012) Fecal carriage of carbapenemase-producing Enterobacteriaceae: a hidden reservoir in hospitalized and non-hospitalized patients. J Clin Microbiol 50(5):1558–1563
Gona F, Barbera F, Pasquariello AC et al (2014) In vivo multiclonal transfer of bla(KPC-3) from Klebsiella pneumoniae to Escherichia coli in surgery patients. Clin Microbiol Infect 20(10):O633–O635. doi:10.1111/1469-0691.12577
Goren MG, Navon-Venezia S, Chmelnitsky I et al (2010) Carbapenem-resistant KPC-2-producing Escherichia coli in a Tel Aviv Medical Center, 2005 to 2008. Antimicrob Agents Chemother 54(6):2687–2691. doi:10.1128/AAC.01359-09
Grundmann H, Livermore DM, Giske CG et al (2010) Carbapenem-non-susceptible Enterobacteriaceae in Europe: conclusions from a meeting of national experts. Euro Surveill 15(46)
Kim YA, Qureshi ZA, Adams-Haduch JM et al (2012) Features of infections due to Klebsiella pneumoniae carbapenemase-producing Escherichia coli: emergence of sequence type 131. Clin Infect Dis 55(2):224–231
Lau SH, Kaufmann ME, Livermore DM et al (2008) UK epidemic Escherichia coli strains A-E, with CTX-M-15 beta-lactamase, all belong to the international O25:H4-ST131 clone. J Antimicrob Chemother 62(6):1241–1244
Ma L, Siu LK, Lin JC et al (2013) Updated molecular epidemiology of carbapenem-non-susceptible Escherichia coli in Taiwan: first identification of KPC-2 or NDM-1-producing E. coli in Taiwan. BMC Infect Dis 13:599. doi: 10.1186/1471-2334-13-599
Mavroidi A, Miriagou V, Malli E et al (2012) Emergence of Escherichia coli sequence type 410 (ST410) with KPC-2 β-lactamase. Int J Antimicrob Agents 39(3):247–250
Miriagou V, Cornaglia G, Edelstein M et al (2010) Acquired carbapenemases in Gram-negative bacterial pathogens: detection and surveillance issues. Clin Microbiol Infect 16(2):112–122. doi:10.1111/j.1469-0691.2009.03116.x
Morris D, Boyle F, Ludden C et al (2011) Production of KPC-2 carbapenemase by an Escherichia coli clinical isolate belonging to the international ST131 clone. Antimicrob Agents Chemother 55(10):4935–4936. doi:10.1128/AAC.05127-11
Multi Locus Sequence Typing scheme from the website of the University of Warwick. http://mlst.warwick.ac.uk/mlst/dbs/Ecoli
Naas T, Cuzon G, Gaillot O et al (2011) When carbapenem-hydrolyzing beta-lactamase Kpc meets Escherichia coli ST131 in France. Antimicrob Agents Chemother 55(10):4933–4934. doi:10.1128/AAC.00719-11
Nicolas-Chanoine MH, Robert J, Vigan M et al (2013) Different factors associated with CTX-M-producing ST131 and non-ST131 Escherichia coli clinical isolates. PLoS One 8(9), e72191
Nicolas-Chanoine MH, Bertrand X, Madec JY (2014) Escherichia coli ST131, an intriguing clonal group. Clin Microbiol Rev 27(3):543–574. doi:10.1128/CMR.00125-13
O'Hara JA, Hu F, Ahn C et al (2014) Molecular epidemiology of KPC-producing Escherichia coli: occurrence of ST131-fimH30 subclone harboring pKpQIL-like IncFIIk plasmid. Antimicrob Agents Chemother 58(7):4234–4237. doi:10.1128/AAC.02182-13
Pagani L, Migliavacca R, Pallecchi L et al (2002) Emerging extended-spectrum beta-lactamases in Proteus mirabilis. J Clin Microbiol 40(4):1549–1552
Petrella S, Ziental-Gelus N, Mayer C et al (2008) Genetic and structural insights into the dissemination potential of the extremely broad-spectrum class A beta-lactamase KPC-2 identified in an Escherichia coli strain and an Enterobacter cloacae strain isolated from the same patient in France. Antimicrob Agents Chemother 52(10):3725–3736. doi:10.1128/AAC.00163-08
Platell JL, Johnson JR, Cobbold RN et al (2011) Multidrug-resistant extraintestinal pathogenic Escherichia coli of sequence type ST131 in animals and foods. Vet Microbiol 153(1–2):99–108. doi: 10.1016/j.vetmic.2011.05.007
Pomba C, López-Cerero L, Bellido M et al (2014) Within-lineage variability of ST131 Escherichia coli isolates from humans and companion animals in the south of Europe. J Antimicrob Chemother 69(1):271–273. doi:10.1093/jac/dkt343
Richter SN, Frasson I, Bergo C et al (2011) Transfer of KPC-2 Carbapenemase from Klebsiella pneumoniae to Escherichia coli in a patient: first case in Europe. J Clin Microbiol 49(5):2040–2042. doi:10.1128/JCM.00133-11
Ruiz-Garbajosa P, Curiao T, Tato M et al (2013) Multiclonal dispersal of KPC genes following the emergence of non-ST258 KPC-producing Klebsiella pneumoniae clones in Madrid, Spain. J Antimicrob Chemother 68(11):2487–2492
Tenover FC, Arbeit RD, Goering RV et al (1995) Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J Clin Microbiol 33(9):2233–2239
Tzelepi E, Magana C, Platsouka E et al (2003) Extended-spectrum beta-lactamase types in Klebsiella pneumoniae and Escherichia coli in two Greek hospitals. Int J Antimicrob Agents 21(3):285–288
Urban C, Bradford PA, Tuckman M et al (2008) Carbapenem-resistant Escherichia coli harboring Klebsiella pneumoniae carbapenemase beta-lactamases associated with long-term care facilities. Clin Infect Dis 46(11):e127–e130. doi:10.1086/588048
Viau RA, Hujer AM, Marshall SH et al (2012) “Silent” dissemination of Klebsiella pneumoniae isolates bearing K. pneumoniae carbapenemase in a long-term care facility for children and young adults in Northeast Ohio. Clin Infect Dis 54(9):1314–1321. doi:10.1093/cid/cis036
Wirth T, Falush D, Lan R et al (2006) Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol 60(5):1136–1151
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Piazza, A. et al. (2015). Emergence of Escherichia coli Sequence Type 131 (ST131) and ST3948 with KPC-2, KPC-3 and KPC-8 carbapenemases from a Long-Term Care and Rehabilitation Facility (LTCRF) in Northern Italy. In: Donelli, G. (eds) Advances in Microbiology, Infectious Diseases and Public Health. Advances in Experimental Medicine and Biology(), vol 901. Springer, Cham. https://doi.org/10.1007/5584_2015_5017
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