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Web-Enabled Knowledge-Based Analysis of Genetic Data

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Medical Data Analysis (ISMDA 2001)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 2199))

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Abstract

We present a web-based implementation of GenePath, an intelligent assistant tool for data analysis in functional genomics. GenePath considers mutant data and uses expert-defined patterns to find gene-to-gene or gene-to-outcome relations. It presents the results of analysis as genetic networks, wherein a set of genes has various influence on one another and on a biological outcome. In the paper, we particularly focus on its web-based interface and explanation mechanisms.

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Author information

Authors and Affiliations

  1. Faculty of Computer and Information Science, University of Ljubljana, Slovenia

    Peter Juvan, Blaž Zupan, Janez Demšar & Ivan Bratko

  2. Jožef Stefan Institute, Ljubljana, Slovenia

    Ivan Bratko

  3. Office of Information Technology and Department of Family and Community Medicine, Baylor College of Medicine, Houston, TX, USA

    Blaž Zupan

  4. Division of Neuroscience, USA

    John A. Halter

  5. Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX, USA

    Adam Kuspa

  6. Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA

    Adam Kuspa & Gad Shaulsky

Authors
  1. Peter Juvan
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  2. Blaž Zupan
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  3. Janez Demšar
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  4. Ivan Bratko
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  5. John A. Halter
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  6. Adam Kuspa
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  7. Gad Shaulsky
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Editor information

Editors and Affiliations

  1. Polytechnical University of Madrid Artificial Intelligence Laboratory, Medical Informatics Group, 28660, Boadilla del Monte (Madrid), Spain

    Jose Crespo  & Victor Maojo  & 

  2. Health Bioinformatics Unit, Institute of Health Carlos III, Ctra. de Majadahonda-Pozuelo Km.2, 28220, Majadahonda (Madrid), Spain

    Fernando Martin

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© 2001 Springer-Verlag Berlin Heidelberg

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Cite this paper

Juvan, P. et al. (2001). Web-Enabled Knowledge-Based Analysis of Genetic Data. In: Crespo, J., Maojo, V., Martin, F. (eds) Medical Data Analysis. ISMDA 2001. Lecture Notes in Computer Science, vol 2199. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-45497-7_17

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  • DOI: https://doi.org/10.1007/3-540-45497-7_17

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  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-42734-6

  • Online ISBN: 978-3-540-45497-7

  • eBook Packages: Springer Book Archive

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