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DNA and circular splicing?

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DNA Computing (DNA 2000)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 2054))

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Abstract

Circular splicing has been very recently introduced to model a specific recombinant behaviour of circular DNA, carrying on the investigation initiated with linear splicing. In this paper we restrict ourselves to the relationship between circular regular languages and circular splicing languages. We provide partial results towards a characterization of the class of circular regular languages generated by finite circular splicing systems. We consider a class of languages X* closed under conjugacy relation and with X a regular languages, called here star languages. Using automata theory and combinatorial techniques on words, we show that for a subclass of star languages the corresponding circular languages are circular (Paun) splicing languages. In particular, star languages with X being a finite set or X* being a free monoid belong to this subclass.

Partially supported by MURST Project “Unconventional Computational Models: Syntactic and Combinatorial Methods” — “Modelli di calcolo innovativi: Metodi sintattici e combinatori”.

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Authors and Affiliations

  1. Dipartimento di Informatica Sistemistica e Comunicazione, Università degli Studi di Milano - Bicocca, Via Bicocca degli Arcimboldi 8, 20126, Milano, Italy

    Paola Bonizzoni, Giancarlo Mauri & Rosalba Zizza

  2. Dipartimento di Informatica ed Applicazioni, Università di Salerno, 84081, Baronissi (SA), Italy

    Clelia De Felice

Authors
  1. Paola Bonizzoni
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  2. Clelia De Felice
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  3. Giancarlo Mauri
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  4. Rosalba Zizza
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Editor information

Editors and Affiliations

  1. Department of Computer Science, University of British Columbia, 201-2366 Main Mall, Vancouver, B.C., Canada, V6T 1Z4

    Anne Condon

  2. Leiden Institute of Advanced Computer Science (LIACS), Leiden University, Niels Bohrweg 1, 2333 CA, Leiden, The Netherlands

    Grzegorz Rozenberg

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© 2001 Springer-Verlag Berlin Heidelberg

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Bonizzoni, P., De Felice, C., Mauri, G., Zizza, R. (2001). DNA and circular splicing?. In: Condon, A., Rozenberg, G. (eds) DNA Computing. DNA 2000. Lecture Notes in Computer Science, vol 2054. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-44992-2_9

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  • DOI: https://doi.org/10.1007/3-540-44992-2_9

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  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-42076-7

  • Online ISBN: 978-3-540-44992-8

  • eBook Packages: Springer Book Archive

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