Skip to main content

Time-Resolved Fluorescence and Two-Photon FCS Investigation of the Interaction of HIV-1 Nucleocapsid Protein with Hairpin Loop Oligonucleotides

  • Chapter
  • 2823 Accesses

Part of the book series: Springer Series on Fluorescence ((SS FLUOR,volume 3))

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   129.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Magde D, Elson EL, Webb WW (1972) Phys Rev Lett 29:705

    Article  CAS  Google Scholar 

  2. Thompson NL, Lieto AM, Allen NW (2002) Curr Opin Struct Biol 12:634

    Google Scholar 

  3. Thompson NL (1991) Fluorescence correlation spectroscopy. In: Lakowicz JR (ed) Topics in fluorescence spectroscopy. Plenum, New York, p 337

    Google Scholar 

  4. Elson EL, Magde D (1974) Biopolymers 13:1

    CAS  Google Scholar 

  5. Magde D, Elson EL, Webb WW (1974) Biopolymers 13:29

    Article  CAS  Google Scholar 

  6. Hess ST, Huang S, Heikal AA, Webb WW (2002) Biochemistry 41:697

    Article  CAS  Google Scholar 

  7. Haupts U, Maiti S, Schwille P, Webb WW (1998) Proc Natl Acad Sci USA 95:13573

    Article  CAS  Google Scholar 

  8. Widengren J, Mets G, Rigler R (1999) Chem Phys 250:171

    Article  CAS  Google Scholar 

  9. Widengren J, Schwille P (2000) J Phys Chem A 104:6416

    Article  CAS  Google Scholar 

  10. Schwille P, Kummer S, Heikal AA, Moerner WE, Webb WW (2000) Proc Natl Acad Sci USA 97:151

    Article  CAS  Google Scholar 

  11. Jung G, Bräuchle C, Zumbusch A (2001) J Chem Phys 114:3149

    Article  CAS  Google Scholar 

  12. Widengren J, Mets U, Rigler R (1995) J Phys Chem 99:13368

    Article  CAS  Google Scholar 

  13. Widengren J, Rigler R, Mets U (1994) J Fluoresc 4:255

    Article  CAS  Google Scholar 

  14. Kask P, Piksarv P, Mets U (1985) Eur Biophys J 12:163

    Article  CAS  Google Scholar 

  15. Ehrenberg M, Rigler R (1974) Chem Phys 4:390

    Article  CAS  Google Scholar 

  16. Aragon SR, Pecora R (1976) J Chem Phys 64:1791

    CAS  Google Scholar 

  17. Bieschke J, Giese A, Schulz-Schaeffer W, Zerr I, Poser S, Eigen M, Kretzschmar H (2000) Proc Natl Acad Sci USA 97:5468

    Article  CAS  Google Scholar 

  18. Hinterdorfer P, Gruber HJ, Striessnig J, Glossmann H, Schindler H (1997) Biochemistry 36:4497

    Article  CAS  Google Scholar 

  19. Pitschke M, Prior R, Haupt M, Riesner D (1998) Nat Med 4:832

    Article  CAS  Google Scholar 

  20. Tjernberg LO, Pramanik A, Bjorling S, Thyberg P, Thyberg J, Nordstedt C, Berndt KD, Terenius L, Rigler R (1999) Chem Biol 6:53

    Article  CAS  Google Scholar 

  21. Post K, Pitschke M, Schafer O, Wille H, Appel TR, Kirsch D, Mehlhorn I, Serban H, Prusiner SB, Riesner D (1998) Biol Chem 379:1307

    Article  CAS  Google Scholar 

  22. Jansen K, Schafer O, Birkmann E, Post K, Serban H, Prusiner SB, Riesner D (2001) Biol Chem 382:683

    Article  CAS  Google Scholar 

  23. Pramanik A, Rigler R (2000) FCS—Analysis of ligand-receptor interactions in living cells. In: Rigler R, Elson ES (eds) Fluorescence correlation spectroscopy: theory and application. Springer, Berlin Heidelberg New York, p 101

    Google Scholar 

  24. Matayoshi E, Swift K (2000) Application of FCS to protein-ligand interactions: comparison with fluorescence polarization. In: Rigler R, Elson ES (eds) Fluorescence correlation spectroscopy: theory and applications. Springer, Berlin Heidelberg New York, p 84

    Google Scholar 

  25. Van Craenenbroeck E, Vercammen J, Matthys G, Beirlant J, Marot C, Hoebeke J, Strobbe R, Engelborghs Y (2001) Biol Chem 382:355

    Article  Google Scholar 

  26. Chen Y, Muller JD, Tetin SY, Tyner JD, Gratton E (2000) Biophys J 79:1074

    CAS  Google Scholar 

  27. Schuler J, Frank J, Trier U, Schafer-Korting M, Saenger W (1999) Biochemistry 38:8402

    CAS  Google Scholar 

  28. Lagerkvist AC, Foldes-Papp Z, Persson MA, Rigler R (2001) Protein Sci 10:1522

    Article  CAS  Google Scholar 

  29. Hasler K, Panke O, Junge W (1999) Biochemistry 38:13759

    Article  CAS  Google Scholar 

  30. Wohland T, Friedrich K, Hovius R, Vogel H (1999) Biochemistry 38:8671

    Article  CAS  Google Scholar 

  31. Neumann T, Kirschstein SO, Camacho Gomez JA, Kittler L, Unger E (2001) Biol Chem 382:387

    Article  CAS  Google Scholar 

  32. Bismuto E, Gratton E, Lamb DC (2001) Biophys J 81:3510

    CAS  Google Scholar 

  33. Wallace MI, Ying L, Balasubramanian S, Klenerman D (2000) J Phys Chem B 104:11551

    CAS  Google Scholar 

  34. Azoulay J, Clamme JP, Darlix JL, Roques BP, Mely Y (2003) J Mol Biol 326:691

    Article  CAS  Google Scholar 

  35. Beltz H, Azoulay J, Bernacchi S, Clamme JP, Ficheux D, Roques B, Darlix JL, Mely Y (2003) J Mol Biol 328:95

    Article  CAS  Google Scholar 

  36. Bonnet G, Krichevsky O, Libchaber A (1998) Proc Natl Acad Sci USA 95:8602

    Article  CAS  Google Scholar 

  37. Lackowicz JR (1999) Principles of fluorescence spectroscopy, 2nd edn. Plenum, New York

    Google Scholar 

  38. Beechem JM, Brand L (1985) Annu Rev Biochem 54:43

    Article  CAS  Google Scholar 

  39. Engelborghs Y (2001) Spectrochim Acta A 57:2255

    CAS  Google Scholar 

  40. Klostermeier D, Millar DP (2001) Biochemistry 40:11211

    Article  CAS  Google Scholar 

  41. Bernacchi S, Stoylov S, Piemont E, Ficheux D, Roques BP, Darlix JL, Mely Y (2002) J Mol Biol 317:385

    Article  CAS  Google Scholar 

  42. Herschlag D (1995) J Biol Chem 270:20871

    CAS  Google Scholar 

  43. Herschlag D, Khosla M, Tsuchihashi Z, Karpel RL (1994) EMBO J 13:2913

    CAS  Google Scholar 

  44. Rein A, Henderson LE, Levin JG (1998) Trends Biochem Sci 23:297

    Article  CAS  Google Scholar 

  45. Tsuchihashi Z, Brown PO (1994) J Virol 68:5863

    CAS  Google Scholar 

  46. Guo J, Henderson LE, Bess J, Kane B, Levin JG (1997) J Virol 71:5178

    CAS  Google Scholar 

  47. Lapadat-Tapolsky M, Gabus C, Rau M, Darlix JL (1997) J Mol Biol 268:250

    Article  CAS  Google Scholar 

  48. Lapadat-Tapolsky M, Pernelle C, Borie C, Darlix JL (1995) Nucleic Acids Res 23:2434

    CAS  Google Scholar 

  49. Baudin F, Marquet R, Isel C, Darlix JL, Ehresmann B, Ehresmann C (1993) J Mol Biol 229:382

    Article  CAS  Google Scholar 

  50. Jeeninga RE, Huthoff HT, Gultyaev AP, Berkhout B (1998) Nucleic Acids Res 26:5472

    Article  CAS  Google Scholar 

  51. Driscoll MD, Hughes SH (2000) J Virol 74:8785

    Article  CAS  Google Scholar 

  52. Guo J, Wu T, Bess J, Henderson LE, Levin JG (1998) J Virol 72:6716

    CAS  Google Scholar 

  53. Guo J, Wu T, Anderson J, Kane BF, Johnson DG, Gorelick RJ, Henderson LE, Levin JG (2000) J Virol 74:8980

    CAS  Google Scholar 

  54. Davis WR, Gabbara S, Hupe D, Peliska JA (1998) Biochemistry 37:14213

    CAS  Google Scholar 

  55. You JC, McHenry CS (1994) J Biol Chem 269:31491

    CAS  Google Scholar 

  56. Johnson PE, Turner RB, Wu ZR, Hairston L, Guo J, Levin JG, Summers MF (2000) Biochemistry 39:9084

    CAS  Google Scholar 

  57. Hargittai MR, Mangla AT, Gorelick RJ, Musier-Forsyth K (2001) J Mol Biol 312:985

    Article  CAS  Google Scholar 

  58. Williams MC, Rouzina I, Wenner JR, Gorelick RJ, Musier-Forsyth K, Bloomfield VA (2001) Proc Natl Acad Sci USA 98:6121

    Article  CAS  Google Scholar 

  59. Tyagi S, Kramer FR (1996) Nat Biotechnol 14:303

    CAS  Google Scholar 

  60. Bonnet G, Tyagi S, Libchaber A, Kramer FR (1999) Proc Natl Acad Sci USA 96:6171

    CAS  Google Scholar 

  61. Stoylov SP, Vuilleumier C, Stoylova E, De Rocquigny H, Roques BP, Gerard D, Mely Y (1997) Biopolymers 41:301

    Article  CAS  Google Scholar 

  62. De Rocquigny H, Ficheux D, Gabus C, Fournie-Zaluski MC, Darlix JL, Roques BP (1991) Biochem Biophys Res Commun 180:1010

    Google Scholar 

  63. Livesey AK, Brochon JC (1987) Biophys J 52:693

    CAS  Google Scholar 

  64. Brochon JC (1994) Meth Enzymol 240:262

    CAS  Google Scholar 

  65. Clamme JP, Azoulay J, Mély Y (2003) Biophys J 84:1960

    CAS  Google Scholar 

  66. Edman L, Mets U, Rigler R (1996) Proc Natl Acad Sci USA 93:6710

    Article  CAS  Google Scholar 

  67. Widengren J, Dapprich J, Rigler R (1997) Chem Phys 216:417

    Article  CAS  Google Scholar 

  68. Vamosi G, Gohlke C, Clegg RM (1996) Biophys J 71:972

    Article  CAS  Google Scholar 

  69. Bernacchi S, Piemont E, Potier N, Dorsselaer A, Mely Y (2003) Biophys J 84:643

    CAS  Google Scholar 

  70. Bernacchi S, Mely Y (2001) Nucleic Acids Res 29:E62

    Article  CAS  Google Scholar 

  71. Kasha M (1963) Radiat Res 20:55

    CAS  Google Scholar 

  72. Kasha M (1991) Basic Life Sci 58:231

    CAS  Google Scholar 

  73. Scholes DS, Ghiggino KP (1994) J Phys Chem 98:4580

    Article  CAS  Google Scholar 

  74. Chan B, Weidemaier K, Yip WT, Barbara PF, Musier-Forsyth K (1999) Proc Natl Acad Sci USA 96:459

    CAS  Google Scholar 

  75. Rivetti C, Walker C, Bustamante C (1998) J Mol Biol 280:41

    Article  CAS  Google Scholar 

  76. Ying L, Wallace MI, Balasubramanian S (2000) J Phys Chem B 104:5171

    Article  CAS  Google Scholar 

  77. Smith C, Lee SW, Wong E, Gallardo H, Page K, Gaspar O, Lebkowski J, Gilboa E (1996) Antiviral Res 32:99

    Article  CAS  Google Scholar 

  78. Wennmalm S, Edman L, Rigler R (1997) Proc Natl Acad Sci USA 94:10641

    Article  CAS  Google Scholar 

  79. Bonnet G, Krichevsky O, Libchaber A (1998) Proc Natl Acad Sci USA 95:8602

    Article  CAS  Google Scholar 

  80. Nonin S, Leroy JL, Gueron M (1995) Biochemistry 34:10652

    Article  CAS  Google Scholar 

  81. Leroy JL, Charretier E, Kochoyan M, Gueron M (1988) Biochemistry 27:8894

    Article  CAS  Google Scholar 

  82. Cain RJ, Glick GD (1997) Nucleic Acids Res 25:836

    Article  CAS  Google Scholar 

  83. Kovacic RT, van Holde KE (1977) Biochemistry 16:1490

    Article  CAS  Google Scholar 

  84. Tirado MM, Garcia de la Torre J (1979) J Chem Phys 71:2581

    Article  CAS  Google Scholar 

  85. Herschlag D, Khosla M, Tsuchihashi Z, Karpel RL (1994) EMBO J 13:2913

    CAS  Google Scholar 

  86. Urbaneja MA, Wu M, Casas-Finet JR, Karpel RL (2002) J Mol Biol 318:749

    Article  CAS  Google Scholar 

  87. Sykora KW, Moelling K (1981) J Gen Virol 55:379

    Article  CAS  Google Scholar 

  88. Vuilleumier C, Bombarda E, Morellet N, Gerard D, Roques BP, Mely Y (1999) Biochemistry 38:16816

    Article  CAS  Google Scholar 

  89. Urbaneja MA, Wu M, Casas-Finet JR, Karpel RL (2002) J. Mol Biol 318:749

    Article  CAS  Google Scholar 

  90. Tisne C, Roques BP, Dardel F (2001) J Mol Biol 306:443

    CAS  Google Scholar 

  91. Mely Y, de Rocquigny H, Sorinas-Jimeno M, Keith G, Roques BP, Marquet R, Gerard D (1995) J Biol Chem 270:1650

    CAS  Google Scholar 

  92. Berkhout B, Vastenhouw NL, Klasens BI, Huthoff H (2001) RNA 7:1097

    Article  CAS  Google Scholar 

  93. Chang KY, Tinoco I Jr (1997) J Mol Biol 269:52

    Article  CAS  Google Scholar 

  94. You JC, McHenry CS (1994) J Biol Chem 269:31491

    CAS  Google Scholar 

  95. SantaLucia J Jr (1998) Proc Natl Acad Sci USA 95:1460

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2005 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Azoulay, J. et al. (2005). Time-Resolved Fluorescence and Two-Photon FCS Investigation of the Interaction of HIV-1 Nucleocapsid Protein with Hairpin Loop Oligonucleotides. In: Hof, M., Hutterer, R., Fidler, V. (eds) Fluorescence Spectroscopy in Biology. Springer Series on Fluorescence, vol 3. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-27004-3_11

Download citation

Publish with us

Policies and ethics