Abstract
Peptide bond cis/trans isomerases (PCTIases) catalyze an intrinsically slow rotational motion taking part in the conformational dynamics of a protein backbone in all of its folding states. In this way, PCTIases assist other proteins to shape their functionally active structure. They have been associated with viral, bacterial, and parasitic infection, signal transduction, cell differentiation, altered metabolic activity, apoptosis, and many other physiological and pathophysiological processes. The need to understand, characterize, and control biochemical steps which contribute to the folding of proteins is a problem being addressed in many laboratories today. This review discusses the biochemical basis that the peptidyl prolyl cis/trans isomerase (PPIase) family of PCTIases uses for the control of bioactivity. Special emphasis is given to recent developments in the field of biocatalytic features of PPIases, the mechanism of catalysis, and enzyme inhibition.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Abbreviations
- APIase:
-
Secondary amide peptide bond cis/trans isomerase
- CsA:
-
Cyclosporine A
- CypA:
-
Cyclophilin A; cyclophilin18
- NMR:
-
Nuclear magnetic resonance
- PCTI:
-
Peptide bond cis/trans isomerization
- PCTIase:
-
Peptide bond cis/trans isomerase
- PPIase:
-
Peptidyl prolyl cis/trans isomerase
- SFA:
-
Sanglifehrin A
References
Dugave C (ed) (2006) cis/trans Isomerization in biochemistry. Wiley-VCH Verlag, Weinheim
Stewart DE, Sarkar A, Wampler JE (1990) J Mol Biol 214:253
Jabs A, Weiss MS, Hilgenfeld R (1999) J Mol Biol 286:291
Wathen B, Jia ZC (2008) J Proteome Res 7:145
Exarchos KP, Exarchos TP, Papaloukas C, Troganis AN, Fotiadis DI (2009) BMC Bioinform 10:1471
Lorenzen S, Peters B, Goede A, Preissner R, Frommel C (2005) Proteins 58:589
Reimer U, Fischer G (2002) Biophys Chem 96:203
Kang YK, Jhon JS, Park HS (2006) J Phys Chem B 110:17645
Jakob RP, Schmid FX (2009) J Mol Biol 387:1017
Gallay PA (2009) Clin Liver Dis 13:403
Lu KP, Zhou XZ (2007) Nat Rev Mol Cell Biol 8:904
Luban J (2007) J Virol 81:1054
Barik S (2006) Cell Mol Life Sci 63:2889
Kang CB, Ye H, Dhe-Paganon S, Yoon HS (2008) Neurosignals 16:318
Esnault S, Shen ZJ, Malter JS (2008) Crit Rev Immunol 28:45
Fischer G, Aumüller T (2004) Rev Physiol Biochem Pharmacol 148:105
Bell A, Monaghan P, Page AP (2006) Int J Parasitol 36:261
Takahashi K, Uchida C, Shin RW, Shimazaki K, Uchida T (2008) Cell Mol Life Sci 65:359
Pappenberger G, Aygun H, Engels JW, Reimer U, Fischer G, Kiefhaber T (2001) Nat Struct Biol 8:452
Bieri O, Hellrung B, Schutkowski M, Drewello M, Kiefhaber T (1999) Proc Natl Acad Sci USA 96:9597
Brandts JF, Halvorson HR, Brennan M (1975) Biochemistry 14:4953
Andreotti AH (2003) Biochemistry 42:9515
Ng KKS, Park-Snyder S, Weis WI (1998) Biochemistry 37:17965
Weiwad M, Werner A, Rücknagel P, Schierhorn A, Küllertz G, Fischer G (2004) J Mol Biol 339:635
Guan RJ, Xiang Y, He XL, Wang CG, Wang M, Zhang Y, Sundberg EJ, Wang DC (2004) J Mol Biol 341:1189
Garcia-Pino A, Buts L, Wyns L, Loris R (2006) J Mol Biol 361:153
Scherer G, Kramer ML, Schutkowski M, Reimer U, Fischer G (1998) J Am Chem Soc 120:5568
Schechter I, Berger A (1967) Biochem Biophys Res Commun 27:157
Scholz C, Scherer G, Mayr LM, Schindler T, Fischer G, Schmid FX (1998) Biol Chem 379:361
Sekerina E, Rahfeld JU, Muller J, Fanghänel J, Rascher C, Fischer G, Bayer P (2000) J Mol Biol 301:1003
Zhang Y, Daum S, Wildemann D, Zhou XZ, Verdecia MA, Bowman ME, Lücke C, Hunter T, Lu KP, Fischer G, Noel JP (2007) ACS Chem Biol 2:320
Jordens J, Janssens V, Longin S, Stevens I, Martens E, Bultynck G, Engelborghs Y, Lescrinier E, Waelkens E, Goris J, Van Hoof C (2006) J Biol Chem 281:6349
Liu J, Farmer JD Jr, Lane WS, Friedman J, Weissman I, Schreiber SL (1991) Cell 66:807
Friedman J, Weissman I (1991) Cell 66:799
Schreiber SL (1991) Science 251:283
Bang H, Pecht A, Raddatz G, Scior T, Solbach W, Brune K, Pahl A (2000) Eur J Biochem 267:3270
Thai V, Renesto P, Fowler CA, Browni DJ, Davis T, Gu WJ, Pollock DD, Kern D, Raoult D, Eisenmesser EZ (2008) J Mol Biol 378:71
Fischer G, Bang H, Mech C (1984) Biomed Biochim Acta 43:1101
Fischer G, Wittmann-Liebold B, Lang K, Kiefhaber T, Schmid FX (1989) Nature 337:476
Takahashi N, Hayano T, Suzuki M (1989) Nature 337:473
Bachinger HP (1987) J Biol Chem 262:17144
Lang K, Schmid FX, Fischer G (1987) Nature 329:268
Fischer G, Bang H (1985) Biochim Biophys Acta 828:39
Harding MW, Galat A, Uehling DE, Schreiber SL (1989) Nature 341:758
Siekierka JJ, Hung SH, Poe M, Lin CS, Sigal NH (1989) Nature 341:755
Rahfeld JU, Schierhorn A, Mann K, Fischer G (1994) FEBS Lett 343:65
Bergsma DJ, Eder C, Gross M, Kersten H, Sylvester D, Appelbaum E, Cusimano D, Livi GP, McLaughlin MM, Kasyan K, Porter TG, Silverman C, Dunnington D, Hand A, Pritchett WP, Bossard MJ, Brandt M, Levy MA (1991) J Biol Chem 266:23204
Jin YJ, Albers MW, Lane WS, Bierer BE, Schreiber SL, Burakoff SJ (1991) Proc Natl Acad Sci USA 88:6677
Lu KP, Hanes SD, Hunter T (1996) Nature 380:544
Ranganathan R, Lu KP, Hunter T, Noel JP (1997) Cell 89:875
Stoller G, Rücknagel KP, Nierhaus KH, Schmid FX, Fischer G, Rahfeld JU (1995) EMBO J 14:4939
Hesterkamp T, Hauser S, Lutcke H, Bukau B (1996) Proc Natl Acad Sci USA 93:4437
Blaha G, Wilson DN, Stoller G, Fischer G, Willumeit R, Nierhaus KH (2003) J Mol Biol 326:887
Kramer G, Rauch T, Rist W, Vorderwulbecke S, Patzelt H, Schulze-Specking A, Ban N, Deuerling E, Bukau B (2002) Nature 419:171
Schiene-Fischer C, Habazettl J, Schmid FX, Fischer G (2002) Nat Struct Biol 9:419
Lee YS, Marcu MG, Neckers L (2004) Chem Biol 11:991
Onuoha SC, Mukund SR, Coulstock ET, Sengerova B, Shaw J, McLaughlin SH, Jackson SE (2007) J Mol Biol 372:287
Gell DA, Feng L, Zhou SP, Jeffrey PD, Bendak K, Gow A, Weiss MJ, Shi YG, Mackay JP (2009) J Biol Chem 284:29462
Sayah DM, Sokolskaja E, Berthoux L, Luban J (2004) Nature 430:569
Neagu MR, Ziegler P, Pertel T, Strambio-De-Castillia C, Grutter C, Martinetti G, Mazzucchelli L, Grutter M, Manz MG, Luban J (2009) J Clin Invest 119:3035
He ZY, Li LG, Luan S (2004) Plant Physiol 134:1248
Adams B, Musiyenko A, Kumar R, Barik S (2005) J Biol Chem 280:24308
Schiene C, Fischer G (2000) Curr Opin Struct Biol 10:40
Schmid FX (2005) In: Buchner J, Kiefhaber T (eds) Protein folding handbook. Wiley-VCH, Weinheim, p 916
Fischer G, Bang H, Berger E, Schellenberger A (1984) Biochim Biophys Acta 791:87
Brandts JF, Lin LN (1986) Meth Enzymol 131:107
Weiwad M, Küllertz G, Schutkowski M, Fischer G (2000) FEBS Lett 478:39
Zhou XZ, Kops O, Werner A, Lu PJ, Shen MH, Stoller G, Küllertz G, Stark M, Fischer G, Lu KP (2000) Mol Cell 6:873
Brandsch M, Thunecke F, Küllertz G, Schutkowski M, Fischer G, Neubert K (1998) J Biol Chem 273:3861
Bailey PD, Boyd CAR, Collier ID, Kellett GL, Meredith D, Morgan KM, Pettecrew R, Price RA (2005) Org Biomol Chem 3:4038
Lummis SCR, Beene DL, Lee LW, Lester HA, Broadhurst RW, Dougherty DA (2005) Nature 438:248
Wittelsberger A, Keller M, Scarpellino L, Patiny L, Acha-Orbea H, Mutter M (2000) Angew Chem Int Ed 39:1111
Garciaecheverria C, Kofron JL, Kuzmic P, Kishore V, Rich DH (1991) J Am Chem Soc 114:2758
Kramer ML, Fischer G (1997) Biopolymers 42:49
Zoldak G, Aumüller T, Lücke C, Hritz J, Ostenbrink C, Fischer G, Schmid FX (2009) Biochemistry 48:10423
Bosco DA, Eisenmesser EZ, Pochapsky S, Sundquist WI, Kern D (2002) Proc Natl Acad Sci USA 99:5247
Kern D, Scherer G, Fischer G, Drakenberg T (1995) Biochemistry 34:13594
Videen JS, Stamnes MA, Hsu VL, Goodman M (1994) Biopolymers 34:171
Lippens G, Landrieu I, Smet C (2007) FEBS J 274:5211
Hubner D, Drakenberg T, Forsen S, Fischer G (1991) FEBS Lett 284:79
Eisenmesser EZ, Bosco DA, Akke M, Kern D (2002) Science 295:1520
Kern D, Eisenmesser EZ, Wolf-Watz M (2005) Nucl Magn Reson Biol Macromol 394:507
Scholz C, Zarnt T, Kern G, Lang K, Burtscher H, Fischer G, Schmid FX (1996) J Biol Chem 273:12703
Veeraraghavan S, Holzman TF, Nall BT (1996) Biochemistry 35:10601
Schiene-Fischer C, Habazettl J, Tradler T, Fischer G (2002) Biol Chem 383:1865
Thies MJW, Mayer J, Augustine JG, Frederick CA, Lilie H, Buchner J (1999) J Mol Biol 293:67
Agarwal RP, Threatte GA, McPherson R (1987) Clin Chem 33:481
Baughman G, Wiederrecht GJ, Chang F, Martin MM, Bourgeois S (1997) Biochem Biophys Res Commun 232:437
Ryffel B, Foxwell BM, Gee A, Greiner B, Woerly G, Mihatsch MJ (1988) Transplantation 46:90S
Fischer G (1994) Angew Chem Int Ed 33:1415
Eckert B, Martin A, Balbach J, Schmid FX (2005) Nat Struct Mol Biol 12:619
Lu KP, Finn G, Lee TH, Nicholson LK (2007) Nat Chem Biol 3:619
Coaker G, Falick A, Staskawicz B (2005) Science 308:548
Aumüller T, Jahreis G, Fischer G, Schiene-Fischer C (2010) Biochemistry 49:1042
Burbaum JJ, Raines RT, Albery WJ, Knowles J (1989) Biochemistry 28:9293
Fanghänel J, Fischer G (2004) Front Biosci 9:3453
Billich A, Winkler G, Aschauer H, Rot A, Peichl P (1997) J Exp Med 185:975
Andreeva L, Heads R, Green CJ (1999) Int J Exp Pathol 80:305
Yeh ES, Means AR (2007) Nat Rev 7:381
Choi KJ, Piao YJ, Lim MJ, Kim JH, Ha J, Choe W, Kim SS (2007) Cancer Res 67:3654
Obchoei S, Wongkhan S, Wongkham C, Li M, Yao QZ, Chen CY (2009) Med Sci Monit 15:221
Park ST, Aldape RA, Futer O, DeCenzo MT, Livingston DJ (1992) J Biol Chem 267:3316
Kofron JL, Kuzmic P, Kishore V, Colon-Bonilla E, Rich DH (1991) Biochemistry 30:6127
Jakob RP, Zoldak G, Aumüller T, Schmid FX (2009) Proc Natl Acad Sci USA 106:20282
Scholz C, Stoller G, Zarnt T, Fischer G, Schmid FX (1997) EMBO J 16:54
Pappenberger G, Bachmann A, Muller R, Aygun H, Engels JW, Kiefhaber T (2003) J Mol Biol 326:235
Wu XY, Wilcox CB, Devasahayam G, Hackett RL, Arevalo-Rodriguez M, Cardenas ME, Heitman J, Hanes SD (2000) EMBO J 19:3727
Fujimori F, Gunji W, Kikuchi J, Mogi T, Ohashi Y, Makino T, Oyama A, Okuhara K, Uchida T, Murakami Y (2001) Biochem Biophys Res Commun 289:181
Kipping M, Zarnt T, Kiessig S, Reimer U, Fischer G, Bayer P (2001) Biochemistry 40:7957
Schiene C, Reimer U, Schutkowski M, Fischer G (1998) FEBS Lett 432:202
Piotukh K, Gu W, Kofler M, Labudde D, Helms V, Freund C (2005) J Biol Chem 280:23668
Harrison RK, Stein RL (1990) Biochemistry 29:3813
Gamble TR, Vajdos FF, Yoo SH, Worthylake DK, Houseweart M, Sundquist WI, Hill CP (1996) Cell 87:1285
Golbik R, Yu C, Weyher-Stingl E, Huber R, Moroder L, Budisa N, Schiene-Fischer C (2005) Biochemistry 44:16026
Edlich F, Weiwad M, Erdmann F, Fanghänel J, Jarczowski F, Rahfeld JU, Fischer G (2005) EMBO J 24:2688
Hottenrott S, Schumann T, Plückthun A, Fischer G, Rahfeld JU (1997) J Biol Chem 272:15697
Martino L, He YZ, Hands-Taylor KLD, Valentine ER, Kelly G, Giancola C, Conte MR (2009) FEBS J 276:4529
Motohashi K, Koyama F, Nakanishi Y, Ueoka-Nakanishi H, Hisabori T (2003) J Biol Chem 278:31848
Gopalan G, He Z, Balmer Y, Romano P, Gupta R, Heroux A, Buchanan BB, Swaminathan K, Luan S (2004) Proc Natl Acad Sci USA 101:13945
Gourlay LJ, Angelucci F, Baiocco P, Boumis G, Brunori M, Bellelli A, Miele AE (2007) J Biol Chem 282:24851
Shapiguzov A, Edvardsson A, Vener AV (2006) FEBS Lett 580:3671
Hennig L, Christner C, Kipping M, Schelbert B, Rücknagel KP, Grabley S, Küllertz G (1998) Fischer G 37:5953
Vandekerckhove J, Gianazza E, Ghezzi P (2002) Proc Natl Acad Sci USA 99:3505
Fratelli M, Demol H, Puype M, Casagrande S, Villa P, Eberini I, Vandekerckhove J, Gianazza E, Ghezzi P (2003) Proteomics 3:1154
Ghezzi P, Casagrande S, Massignan T, Basso M, Bellacchio E, Mollica L, Biasini E, Tonelli R, Eberini I, Gianazza E, Dai WW, Fratelli M, Salmona M, Sherry B, Bonetto V (2006) Proteomics 6:817
Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M (2009) Science 325:834
Lammers M, Neumann H, Chin JW, James LC (2010) Nat Chem Biol 6:331
DiNovo AA, Schey KL, Vachon WS, McGuffie EM, Olson JC, Vincent TS (2006) Biochemistry 45:4664
Steplewski A, Ebel W, Planey SL, Alnemri ES, Robertson NM, Litwack G (2000) Gene 246:169
Min SH, Cho JS, Oh JH, Shim SB, Hwang DY, Lee SH, Jee SW, Lim HJ, Kim MY, Sheen YY, Kim YK (2005) Neurochem Res 30:955
Eckerdt F, Yuan JP, Saxena K, Martin B, Kappel S, Lindenau C, Kramer A, Naumann S, Daum S, Fischer G, Dikic I, Kaufmann M, Strebhardt K (2005) J Biol Chem 280:36575
Shen ZJ, Esnault S, Malter JS (2005) Nat Immunol 6:1280
Lu PJ, Zhou XZ, Liou YC, Noel JP, Lu KP (2002) J Biol Chem 277:2381
Jeffery CJ (1999) Trends Biochem Sci 24:8
Montague JW, Hughes FM, Cidlowski JA (1997) J Biol Chem 272:6677
Nicieza RG, Huergo J, Connolly BA, Sanchez J (1999) J Biol Chem 274:20366
Schmidt B, Tradler T, Rahfeld JU, Ludwig B, Jain B, Mann K, Rücknagel KP, Janowski B, Schierhorn A, Küllertz G, Hacker J, Fischer G (1996) Mol Microbiol 21:1147
Manteca A, Sanchez J (2004) J Bacteriol 186:6325
Quemeneur E, Moutiez M, Charbonnier JB, Menez A (1998) Nature 391:301
Wallace AC, Laskowski RA, Thornton JM (1996) Protein Sci 5:1001
Dominguez-Solis JR, He ZY, Lima A, Ting JL, Buchanan BB, Luan S (2008) Proc Natl Acad Sci USA 106:16386
Lee SP, Hwang YS, Kim YJ, Kwon KS, Kim HJ, Kim K, Chae HZ (2001) J Biol Chem 276:29826
Boulos S, Meloni BP, Arthur PG, Majda B, Bojarski C, Knuckey NW (2007) Neurobiol Dis 25:54
Homme MB, Carter C, Scarlata S (2005) Biophys J 88:2078
Hamelberg D, McCammon A (2009) J Am Chem Soc 131:147
Ma LF, Hsieh-Wilson LC, Schultz PG (1998) Proc Natl Acad Sci USA 95:7251
Ikura T, Ito N (2007) Protein Sci 16:2618
Ikura T, Kinoshita K, Ito N (2008) Protein Eng Des Sel 21:83
Eberhardt ES, Loh SN, Hinck AP, Raines RT (1992) J Am Chem Soc 114:5437
Zydowsky LD, Etzkorn FA, Chang HY, Ferguson SB, Stolz LA, Ho SI, Walsh CT (1992) Protein Sci 1:1092
Fraser JS, Clarkson MW, Degnan SC, Erion R, Kern D, Alber T (2009) Nature 462:669
Brath U, Akke M (2009) J Mol Biol 387:233
Harrison RK, Stein RL (1992) J Am Chem Soc 114:3464
Ke HM, Mayrose D, Cao W (1993) Proc Natl Acad Sci USA 90:3324
Baum N, Schiene-Fischer C, Frost M, Schumann M, Sabapathy K, Ohlenschlager O, Grosse F, Schlott B (2009) Oncogene 28:3915
Schutkowski M, Wöllner S, Fischer G (1994) Biochemistry 34:13016
Kang YK (2006) J Phys Chem B 110:21338
Tchaicheeyan O (2004) FASEB J 18:783
Agarwal PK (2004) Proteins 56:449
Howard BR, Vajdos FF, Li S, Sundquist WI, Hill CP (2003) Nat Struct Biol 10:475
Pirkl F, Buchner J (2001) J Mol Biol 308:795
Bose S, Weikl T, Bugl H, Buchner J (1996) Science 274:1715
Chakraborty A, Das I, Datta R, Sen B, Bhattacharyya D, Mandal C, Datta AK (2002) J Biol Chem 277:47451
Mok D, Allan RK, Carrello A, Wangoo K, Walkinshaw MD, Ratajczak T (2006) FEBS Lett 580:2761
Moparthi SB, Fristedt R, Mishra R, Almstedt K, Karlsson M, Hammarström P, Carlsson U (2010) Biochemistry 49:1137
Fischer G, Wawra S (2006) Mol Microbiol 61:1388
Hulko M, Lupas AN, Martin J (2007) Protein Sci 16:644
Kuzuhara T, Horikoshi M (2004) Nat Struct Mol Biol 11:275
Wang XDJ, Etzkorn FA (2006) Biopolymers 84:125
Sanglier JJ, Quesniaux V, Fehr T, Hofmann H, Mahnke M, Memmert K, Schuler W, Zenke G, Gschwind L, Maurer C, Schilling W (1999) J Antibiot 52:466
Kung L, Batiuk TD, Palomo-Pinon S, Noujaim J, Helms LM, Halloran PF (2001) Am J Transplant 1:325
Baumgrass R, Zhang YX, Erdmann F, Thiel A, Weiwad M, Radbruch A, Fischer G (2004) J Biol Chem 279:2470
Zhang YX, Baumgrass R, Schutkowski M, Fischer G (2004) Chembiochem 5:1006
Sigal NH, Dumont F, Durette P, Siekierka JJ, Peterson L, Rich DH, Dunlap BE, Staruch MJ, Melino MR, Koprak SL (1991) J Exp Med 173:619
Fliri H, Baumann G, Enz A, Kallen J, Luyten M, Mikol V, Movva R, Quesniaux V, Schreier M, Walkinshaw M, Wenger R, Zenke G, Zurini M (1993) Ann NY Acad Sci 696:47
Theriault Y, Logan TM, Meadows R, Yu L, Olejniczak ET, Holzman TF, Simmer RL, Fesik SW (1993) Nature 361:88
Bossard MJ, Koser PL, Brandt M, Bergsma DJ, Levy MA (1991) Biochem Biophys Res Commun 176:1142
Tanaka H, Kuroda A, Marusawa H, Hatanaka H, Kino T, Goto T, Hashimoto M, Taga T (1987) J Am Chem Soc 109:5031
Weiwad M, Edlich F, Kilka S, Erdmann F, Jarczowski F, Dorn M, Moutty MC, Fischer G (2006) Biochemistry 45:15776
Rosen MK, Standaert RF, Galat A, Nakatsuka M, Schreiber SL (1990) Science 248:863
Goulet MT, Rupprecht KM, Sinclair PJ, Wyvratt MJ, Parsons WH (1994) Perspect Drug Discovery Des 2:145
Itoh S, Decenzo MT, Livingston DJ, Pearlman DA, Navia MA (1995) Bioorg Med Chem Lett 5:1983
Kawai M, Lane BC, Hsieh GC, Mollison KW, Carter GW, Luly JR (1993) FEBS Lett 316:107
Bierer BE, Somers PK, Wandless TJ, Burakoff SJ, Schreiber SL (1990) Science 250:556
Bierer BE, Mattila PS, Standaert RF, Herzenberg LA, Burakoff SJ, Crabtree G, Schreiber SL (1990) Proc Natl Acad Sci USA 87:9231
Brown EJ, Albers MW, Shin TB, Ichikawa K, Keith CT, Lane WS, Schreiber SL (1994) Nature 369:756
Sabatini DM, Erdjumentbromage H, Lui M, Tempst P, Snyder SH (1994) Cell 78:35
Chiu MI, Katz H, Berlin V (1994) Proc Natl Acad Sci USA 91:12574
Meric-Bernstam F, Gonzalez-Angulo AM (2009) J Clin Oncol 27:2278
Le Tourneau C, Faivre S, Serova M, Raymond E (2008) Br J Cancer 99:1197
Fasolo A, Sessa C (2008) Expert Opin Investig Drugs 17:1717
Choi JW, Chen J, Schreiber SL, Clardy J (1996) Science 273:239
Ocain TD, Longhi D, Steffan RJ, Caccese RG, Sehgal SN (1993) Biochem Biophys Res Commun 192:1340
Sedrani R, Jones LH, Jutzi-Eme AM, Schuler W, Cottens S (1999) Bioorg Med Chem Lett 9:459
Rosenwirth B, Billich A, Datema R, Donatsch P, Hammerschmid F, Harrison R, Hiestand P, Jaksche H, Mayer P, Peichl P, Quesniaux V, Schatz F, Schuurman HJ, Traber R, Wenger R, Wolff B, Zenke G, Zurini M (1994) Antimicrob Agents Chemother 38:1763
Ptak RG, Gallay PA, Jochmans D, Halestrap AP, Ruegg UT, Pallansch LA, Bobardt MD, de Bethune MP, Neyts J, De Clercq E, Dumont JM, Scalfaro P, Besseghir K, Wenger RM, Rosenwirth B (2008) Antimicrob Agents Chemother 52:1302
Hopkins S, Scorneaux B, Huang Z, Murray MG, Wring S, Smitley C, Harris R, Erdmann F, Fischer G, Ribeill Y (2010) Antimicrob Agents Chemother 54:660
Malesević M, Kühling J, Erdmann F, Balsley MA, Bukrinsky MI, Constant SL, Fischer G (2010) Angew Chem Int Ed 49:213
Malouitre S, Dube H, Selwood D, Crompton M (2010) Biochem J 425:137
Sedrani R, Kallen J, Cabrejas LMM, Papageorgiou CD, Senia F, Rohrbach S, Wagner D, Thai B, Eme AMJ, France J, Oberer L, Rihs G, Zenke G, Wagner J (2003) J Am Chem Soc 125:3849
Zenke G, Strittmatter U, Fuchs S, Quesniaux VFJ, Brinkmann V, Schuler W, Zurini M, Enz A, Billich A, Sanglier JJ, Fehr T (2001) J Immunol 166:7165
Zhang LH, Liu JO (2001) J Immunol 166:5611
Taylor P, Blackburn E, Sheng YG, Harding S, Hsin KY, Kan D, Shave S, Walkinshaw M (2008) Br J Pharmacol 153:S55
Li J, Chen J, Zhang L, Wang F, Gui CS, Qin Y, Xu Q, Liu H, Nan FJ, Shen JK, Bai DL, Chen KX, Shen X, Jiang HL (2006) Bioorg Med Chem 14:5527
Hart SA, Etzkorn FA (1999) J Org Chem 64:2998
Wang HC, Kim K, Bakhtiar R, Germanas JP (2001) J Med Chem 44:2593
Demange L, Moutiez M, Dugave C (2002) J Med Chem 45:3928
Clavaud C, Heckenroth M, Stricane C, Menez A, Dugave C (2006) Bioconjug Chem 17:807
Daum S, Erdmann F, Fischer G, de Lacroix BF, Hessamian-Alinejad A, Houben S, Frank W, Braun M (2006) Angew Chem Int Ed 45:7454
Daum S, Schumann M, Mathea S, Aumüller T, Balsley MA, Constant SL, de Lacroix BF, Kruska F, Braun M, Schiene-Fischer C (2009) Biochemistry 48:6268
Dumont FJ, Staruch MJ, Koprak SL, Siekierka JJ, Lin CS, Harrison R, Sewell T, Kindt VM, Beattie TR, Wyvratt M (1992) J Exp Med 176:751
Price RD, Yamaji T, Yamamoto H, Higashi Y, Hanaoka K, Yamazaki S, Ishiye M, Aramori I, Matsuoka N, Mutoh S, Yanagihara T, Gold BG (2005) Eur J Pharmacol 509:11
Ruan B, Pong K, Jow F, Bowlby M, Crozier RA, Liu D, Liang S, Chen Y, Mercado ML, Feng X, Bennett F, von Schack D, McDonald L, Zaleska MM, Wood A, Reinhart PH, Magolda RL, Skotnicki J, Pangalos MN, Koehn FE, Carter GT, Abou-Gharbia M, Graziani EI (2008) Proc Natl Acad Sci USA 105:33
Armistead DM, Badia MC, Deininger DD, Duffy JP, Saunders JO, Tung RD, Thomson JA, Decenzo MT, Futer O, Livingston DJ, Murcko MA, Yamashita MM, Navia MA (1995) Acta Crystallogr D 51:522
Holt DA, Konialianbeck AL, Oh HJ, Yen HK, Rozamus LW, Krog AJ, Erhard KF, Ortiz E, Levy MA, Brandt M, Bossard MJ, Luengo JI (1994) Bioorg Med Chem Lett 4:315
Choi C, Li JH, Vaal M, Thomas C, Limburg D, Wu YQ, Chen Y, Soni R, Scott C, Ross DT, Guo H, Howorth P, Valentine H, Liang S, Spicer D, Fuller M, Steiner J, Hamilton GS (2002) Biol Med Chem Lett 12:1421
Wei L, Wu Y, Wilkinson DE, Chen Y, Soni R, Scott C, Ross DT, Guo H, Howorth P, Valentine H, Liang S, Spicer D, Fuller M, Steiner J, Hamilton GS (2002) Biol Med Chem Lett 12:1429
Hudack RA Jr, Barta NS, Guo C, Deal J, Dong L, Fay LK, Caprathe B, Chatterjee A, Vanderpool D, Bigge C, Showalter R, Bender S, Augelli-Szafran CE, Lunney E, Hou X (2006) J Med Chem 49:1202
Holt DA, Luengo JI, Yamashita DS, Oh HJ, Konialian AL, Yen HK, Rozamus LW, Brandt M, Bossard MJ, Levy MA, Eggleston DS, Liang J, Schultz LW, Stout TJ, Clardy J (1993) J Am Chem Soc 115:9925
Edlich F, Weiwad M, Wildemann D, Jarczowski F, Kilka S, Moutty MC, Jahreis G, Lücke C, Schmidt W, Striggow F, Fischer G (2006) J Biol Chem 281:14961
Gold BG (2000) Expert Opin Inv Drug 9:2331
Fanghänel J, Fischer G (2003) Biophys Chem 100:351
Zink DL, Dahl A, Nielsen J, Wu E, Huang L, Kastner C, Dumont FJ (1995) Tetrahedron Lett 36:997
Fehr T, Sanglier JJ, Schuler W, Gschwind L, Ponelle M, Schilling W, Wioland C (1996) J Antibiot 49:230
Raju R, Piggott AM, Conte M, Tnimov Z, Alexandrov K, Capon RJ (2010) Chemistry 16:3194
Burkhard P, Hommel U, Sanner M, Walkinshaw MD (1999) J Mol Biol 287:853
Christner C, Wyrwa R, Marsch S, Küllertz G, Thiericke R, Grabley S, Schumann D, Fischer G (1999) J Med Chem 42:3615
Wildemann D, Erdmann F, Alvarez BH, Stoller G, Zhou XZ, Fanghänel J, Schutkowski M, Lu KP, Fischer G (2006) J Med Chem 49:2147
Daum S, Fanghänel J, Wildemann D, Schiene-Fischer C (2006) Biochemistry 45:12125
Daum S, Lücke C, Wildemann D, Schiene-Fischer C (2007) J Mol Biol 374:147
Wang XJ, Xu B, Mullins AB, Neiler FK, Etzkorn FA (2004) J Am Chem Soc 126:15533
Siegrist R, Zürcher M, Baumgartner C, Seiler P, Diederich F, Daum S, Fischer G, Klein C, Dangl M, Schwaiger M (2007) Helv Chim Acta 90:217
Bayer E, Thutewohl M, Christner C, Tradler T, Osterkamp F, Waldmann H, Bayer P (2005) Chem Commun (Camb) 28:516
Guo CX, Hou XJ, Dong LM, Dagostino E, Greasley S, Ferre R, Marakovits J, Johnson MC, Matthews D, Mroczkowski B, Van Arsdale T, Popoff I, Piraino J, Margosiak S, Thomson J, Los G, Murray BW (2009) Bioorg Med Chem Lett 19:5613
Potter AJ, Ray S, Gueritz L, Nunns CL, Bryant CJ, Scrace SF, Matassova N, Baker L, Dokurno P, Robinson DA, Surgenor AE, Davis B, Murray JB, Richardson CM, Moore JD (2010) Bioorg Med Chem Lett 20:586
Tatara Y, Lin YC, Bamba Y, Mori T, Uchida T (2009) Biochem Biophys Res Commun 384:394
Liebscher M, Jahreis G, Lücke C, Grabley S, Raina S, Schiene-Fischer C (2007) J Biol Chem 282:4437
Wisen S, Gestwicki JE (2008) Anal Biochem 374:371
Wildemann D, Schiene-Fischer C, Aumüller T, Bachmann A, Kiefhaber T, Lücke C, Fischer G (2007) J Am Chem Soc 129:4910
Sarkar P, Reichman C, Saleh T, Birge RB, Kalodimos CG (2007) Mol Cell 25:413
Daniel RM, Dunn RV, Finney JL, Smith JC (2003) Annu Rev Biophys Biomol Struct 32:69
Gemmill TR, Wu XY, Hanes SD (2005) J Biol Chem 280:15510
Kamerlin SCL, Warshel A (2010) Proteins 78:1339
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2011 Springer-Verlag Berlin Heidelberg
About this chapter
Cite this chapter
Schiene-Fischer, C., Aumüller, T., Fischer, G. (2011). Peptide Bond cis/trans Isomerases: A Biocatalysis Perspective of Conformational Dynamics in Proteins. In: Jackson, S. (eds) Molecular Chaperones. Topics in Current Chemistry, vol 328. Springer, Berlin, Heidelberg. https://doi.org/10.1007/128_2011_151
Download citation
DOI: https://doi.org/10.1007/128_2011_151
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-34551-7
Online ISBN: 978-3-642-34552-4
eBook Packages: Chemistry and Materials ScienceChemistry and Material Science (R0)