Abstract
The address space in DNA memory can be extended by combining information of spatial position and base sequences. Controlling the states of DNA in a local area is an essential technique to use positional information. In this paper, we focus on a photonic DNA memory, which uses optical techniques for addressing on the basis of positional information. We present the concept of photonic DNA memory and describe the read out method using local area manipulation of DNA molecules.
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References
Chen, J., Deaton, R., Wang, Y.: A DNA-based memory with in vitro learning and associative recall. In: Proc. of Ninth Annual Meeting on DNA-Based Computers, pp. 127–136 (2003)
Takinoue, M., Suyama, A.: Molecular reactions for a molecular memory based on hairpin DNA. Chem-Bio Informatics Journal 4(3), 93–100 (2004)
Ogura, Y., Beppu, T., Sumiyama, F., Tanida, J.: Translation of DNA molecules based on optical control of DNA reactions for photonic DNA computing. In: Proc. SPIE, vol. 5931, pp. 110–120 (2005)
Ogura, Y., Shogenji, R., Saito, S., Tanida, J.: Evaluation of Fundamental Characteristics of Information Systems Based on Photonic DNA Computing. In: Proc. of Second International Workshop, Bioadit 2006, pp. 192–205 (2006)
Ogura, Y., Beppu, T., Sumiyama, F., Tanida, J.: Toward photonic DNA computing: developing optical techniques for parallel manipulation of DNA. In: Proc. SPIE, vol. 5897, pp. 34–43 (2005)
Kelley, S.O., Barton, J.K., Jackson, N.M., McPherson, L.D., Potter, A.B., Spain, E.M., Allen, M.J., Hill, M.G.: Orienting DNA helices on gold using applied electric fields. Langmuir 14, 6781–6784 (1998)
Jenne, A., Famulok, M.: Disruption of the Streptavidin Interaction with Biotinylated Nucleic Acid Probes by 2-Mercaptoethanol. BioTechniques 26(2), 249–254 (1999)
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Shogenji, R., Tate, N., Beppu, T., Ogura, Y., Tanida, J. (2006). Local Area Manipulation of DNA Molecules for Photonic DNA Memory. In: Mao, C., Yokomori, T. (eds) DNA Computing. DNA 2006. Lecture Notes in Computer Science, vol 4287. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11925903_29
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DOI: https://doi.org/10.1007/11925903_29
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-540-49024-1
Online ISBN: 978-3-540-68423-7
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