Skip to main content

Application of SVD-Based Metabolite Quantification Methods in Magnetic Resonance Spectroscopic Imaging

  • Conference paper
Book cover Medical Imaging and Augmented Reality (MIAR 2006)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 4091))

Included in the following conference series:

  • 1259 Accesses

Abstract

MRSI can reflect the abnormal metabolites information of different diseases in clinical diagnosis. We made research on the application of SVD-based metabolite quantification methods in 2D MRSI by comparing two different SVD algorithms. In the quantification process, first, the FID signals are rearranged into a data matrix. Then, we can make full SVD by Golub algorithm or partial SVD by Lanczos algorithm. Last, the parameter estimation on each metabolite can be acquired by the definition of the linear parameter model. The ordinary full SVD must decompose all the singular value, with a big cost of the time. The partial SVD just needs to calculate the less singular by the character of the Hankel matrix to improve the estimation speed. When the SNR of MRS signals is higher than ten, the computation time on partial SVD is decreased by thirteen times of the ordinary method. But the speed of quantification is only half of the ordinary one when the SNR is lower than one. Improvements of speed and accuracy in metabolite quantification are key factors for 2D MRSI to be a clinical tool in the future.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Gruber, S., Stadlbauer, A., Mlynarik, V.: Proton magnetic resonance spectroscopic imaging in brain tumor diagnosis. Neurosurg Clin. N Am. 16, 101–114 (2005)

    Article  Google Scholar 

  2. Vermathen, P., Laxer, K., Schuff, N., Matson, G.: Evidence of neuronal injury outside the medial temporal lobe in temporal lobe epilepsy: N-acetylaspartate concentration reductions detected with multisection proton MR spectroscopic imaging. Radiology 226, 195–202 (2003)

    Article  Google Scholar 

  3. Golub, G., Pereyra, V.: The differentiation of pseudo-inverses and nonlinear least squares problems whose variables separate. SIAM J. Numer. Anal. 10, 413–432 (1973)

    Article  MATH  MathSciNet  Google Scholar 

  4. Brown, T., Kincaid, B., Ugurbil, K.: NMR chemical shift imaging in three dimensions. Proceedings National Academy of Sciences 79, 3523–3526 (1982)

    Article  Google Scholar 

  5. Vanhamme, L., Sundin, T., Hecke, P.: MR spectroscopy quantitation: a reviews of time-domain methods. NMR in Biomedcine 14, 233–246 (2001)

    Article  Google Scholar 

  6. Golub, G., Reinsch, C.: Singular value decomposition and least squares solutions. Numer. Math. 14, 403–420 (1970)

    Article  MATH  MathSciNet  Google Scholar 

  7. Laudadio, T., Mastronardi, N., Vanhamme, L., Hecke, P., Huffel, S.: Improved Lanczos Algorithms for Blackbox MRS Data Quantitation. Journal of Magnetic Resonance 157, 292–297 (2002)

    Article  Google Scholar 

  8. Ricardo, D., Eric, P.: Lanczos and the Riemannian SVD in information retrieval applications. Numerical Linear Algebra with applications 3, 1–18 (2003)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2006 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Huang, M., Lu, S. (2006). Application of SVD-Based Metabolite Quantification Methods in Magnetic Resonance Spectroscopic Imaging. In: Yang, GZ., Jiang, T., Shen, D., Gu, L., Yang, J. (eds) Medical Imaging and Augmented Reality. MIAR 2006. Lecture Notes in Computer Science, vol 4091. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11812715_16

Download citation

  • DOI: https://doi.org/10.1007/11812715_16

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-37220-2

  • Online ISBN: 978-3-540-37221-9

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics