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Abbreviations
- ATP:
-
Adenosine triphosphate
- Bf :
-
Fungal biomass (g/gsample)
- C:
-
Carbon
- CER:
-
CO2 evolution rate
- CO2 :
-
Carbon dioxide
- DNA:
-
Deoxyribonucleic acid
- e:
-
Density of hypha (g/cm3)
- ELISA:
-
Enzyme-linked immunosorbent assay
- IR:
-
Infrared
- L:
-
Length of hypha (cm/gsample)
- Mbp:
-
Mega base pairs
- mRNA:
-
Messenger ribonucleic acid
- N:
-
Nitrogen
- O:
-
Oxygen
- PCR:
-
Polymerase chain reaction
- PLFA:
-
Phospholipid fatty acids
- qPCR:
-
Quantitative polymerase chain reaction
- r:
-
Radius of hypha
- RNA:
-
Ribonucleic acid
- RNP:
-
Ribonucleoprotein
- Sc :
-
Solid content
- SIR:
-
Substrate-induced respiration
- SmF:
-
Submerged fermentation
- sRNA:
-
Small ribonucleic acid
- SSF:
-
Solid-state fermentation
- tRNA:
-
Transfer ribonucleic acid
References
Krishna C (2005) Solid-state fermentation systems-an overview. Crit Rev Biotechnol 25(1–2):1–30
Ottow JCG (2011) Mikrobiologie von Böden. Springer, Berlin, 508 p
Böhmer U, Frömmel S, Bley T, Müller M, Frankenfeld K, Miethe P (2011) Solid-state fermentation of lignocellulotic materials for the production of enzymes by the white-rot fungus Trametes hirsuta in a modular bioreactor. Eng Life Sci 11(4):395–401
Mitchell DA, Krieger N, Berovic M (2006) Solid-state fermentation bioreactors: fundamentals of design and operation. Springer Science & Business Media, Berlin, 481 p
Li Y, Wadsö L (2011) Simultaneous measurements of colony size and heat production rate of a mould Penicillium brevicompactum growing on agar. J Therm Anal Calorim 104(1):105–111
Madrid RE, Felice CJ (2005) Microbial biomass estimation. Crit Rev Biotechnol 25(3):97–112
Couri S, Mercês EP, Neves BCV, Senna LF (2006) Digital image processing as a tool to monitor biomass growth in Aspergillus niger 3T5B8 solid-state fermentation: preliminary results. J Microsc 224(3):290–297
Dutra J, da C Terzi S, Bevilaqua J, Damaso M, Couri S, Langone M, Senna LF (2008) Lipase production in solid-state fermentation monitoring biomass growth of Aspergillus niger using digital image processing. Appl Biochem Biotechnol 147(1):63–75
Stahl PD, Parkin TB, Christensen M (1999) Fungal presence in paired cultivated and uncultivated soils in central Iowa. USA Biol Fertil Soils 29(1):92–97
Paul EA, Clark FE (1989) Soil microbiology and biochemistry. Academic Press, Waltham, 298 p
Söderström B, Bååth E (1979) Fungal biomass and fungal immobilization of plants nutrients in swedish coniferous forest soils. Rev Ecol Biol Sol 16(4):477–489
Osma JF, Toca-Herrera JL, Rodríguez-Couto S (2011) Environmental, scanning electron and optical microscope image analysis software for determining volume and occupied area of solid-state fermentation fungal cultures. Biotechnol J 6(1):45–55
Haus J (2014) Optische Mikroskopie: Funktionsweise und Kontrastierverfahren. Wiley, New York, 240 p
Nopharatana M, Mitchell DA, Howes T (2003) Use of confocal scanning laser microscopy to measure the concentrations of aerial and penetrative hyphae during growth of Rhizopus oligosporus on a solid surface. Biotechnol Bioeng 84(1):71–77
Horbik D, Łowińska-Kluge A, Górski Z, Stanisz E, Zgoła-Grześkowiak A (2013) Microwave-assisted extraction combined with HPLC-MS/MS for diagnosis of fungal contamination in building materials. J Braz Chem Soc 24(9):1478–1486
Ooijkaas LP, Tramper J, Buitelaar RM (1998) Biomass estimation of Coniothyrium minitans in solid-state fermentation. Enzyme Microb Technol 22(6):480–486
Desgranges C, Vergoignan C, Georges M, Durand A (1991) Biomass estimation in solid state fermentation I. Manual biochemical methods. Appl Microbiol Biotechnol 35(2):200–205
Gessner, Newell SY (2002) Manual of environmental microbiology, 2nd edn. ASM Press, Washington DC
Manter DK, Kelsey RG, Stone JK (2001) Quantification of Phaeocryptopus gaeumannii colonization in Douglas-fir needles by ergosterol analysis. For Pathol 31(4):229–240
Matcham SE, Jordan BR, Wood DA (1985) Estimation of fungal biomass in a solid substrate by three independent methods. Appl Microbiol Biotechnol 21(1):108–112
Zelles L, Hund K, Stepper K (1987) Methoden zur relativen Quantifizierung der pilzlichen Biomasse im Boden. Z Für Pflanzenernähr Bodenkd 150(4):249–252
Klamer M, Bååth E (2004) Estimation of conversion factors for fungal biomass determination in compost using ergosterol and PLFA 18:2ω6,9. Soil Biol Biochem 36(1):57–65
Zhang H, Wolf-Hall C, Hall C (2008) Modified microwave-assisted extraction of ergosterol for measuring fungal biomass in grain cultures. J Agric Food Chem 56(23):11077–11080
Reeslev M, Miller M, Nielsen KF (2003) Quantifying mold biomass on gypsum board: comparison of ergosterol and beta-N-acetylhexosaminidase as mold biomass parameters. Appl Environ Microbiol 69(7):3996–3998
Snajdr J, Valásková V, Merhautová V, Cajthaml T, Baldrian P (2008) Activity and spatial distribution of lignocellulose-degrading enzymes during forest soil colonization by saprotrophic basidiomycetes. Enzyme Microb Technol 43(2):186–192
Muniroh MS, Sariah M, Abidin MAZ, Lima N, Paterson RRM (2014) Rapid detection of Ganoderrna-infected oil palms by microwave ergosterol extraction with HPLC and TLC. J Microbiol Methods 100:143–147
Deng Z-L, Yuan J-P, Zhang Y, Xu X-M, Wu C-F, Peng J, Wang J-H (2013) Fatty acid composition in ergosteryl esters and triglycerides from the fungus Ganoderma lucidum. J Am Oil Chem Soc 90(10):1495–1502
Schmidt O (2006) Wood and tree fungi: biology, damage, protection, and use. Springer Science & Business Media, Berlin, 336 p
Abd-Aziz S, Hung GS, Hassan MA, Abdul Karim MI, Samat N (2008) Indirect method for quantification of cell biomass during solid-state fermentation of palm kernel cake based on protein content. Asian J Sci Res 1(4):385–393
Nilsson K, Bjurman J (1998) Chitin as an indicator of the biomass of two wood-decay fungi in relation to temperature, incubation time, and media composition. Can J Microbiol 44(6):575–581
Ride J, Drysdale R (1972) Rapid method for chemical estimation of filamentous fungi in plant-tissue. Physiol Plant Pathol 2(1):7–15
Scotti CT, Vergoignan C, Feron G, Durand A (2001) Glucosamine measurement as indirect method for biomass estimation of Cunninghamella elegans grown in solid state cultivation conditions. Biochem Eng J 7(1):1–5
Roche N, Venague A, Desgranges C, Durand A (1993) Use of chitin measurement to estimate fungal biomass in solid state fermentation. Biotechnol Adv 11(3):677–683
Blagodatskaya E, Blagodatsky S, Anderson T-H, Kuzyakov Y (2014) Microbial growth and carbon use efficiency in the rhizosphere and root-free soil. PLoS ONE 9(4):e93282
Jirout J, Šimek M, Elhottová D (2011) Inputs of nitrogen and organic matter govern the composition of fungal communities in soil disturbed by overwintering cattle. Soil Biol Biochem 43(3):647–656
May BA, VanderGheynst JS, Rumsey T (2006) The kinetics of Lagenidium giganteum growth in liquid and solid cultures. J Appl Microbiol 101(4):807–814
Knoll S, Mulfinger S, Niessen L, Vogel RF (2002) Rapid preparation of Fusarium DNA from cereals for diagnostic PCR using sonification and an extraction kit. Plant Pathol 51(6):728–734
Voegele RT, Schmid A (2011) RT real-time PCR-based quantification of Uromyces fabae in planta. FEMS Microbiol Lett 322(2):131–137
Tellenbach C, Grünig CR, Sieber TN (2010) Suitability of quantitative real-time PCR to estimate the biomass of fungal root endophytes. Appl Environ Microbiol 76(17):5764–5772
Pilgård A, Alfredsen G, Björdal CG, Fossdal CG, Børja I (2011) qPCR as a tool to study basidiomycete colonization in wooden field stakes. Holzforschung 65(6):889–895
Costa-de-Oliveira S, Silva AP, Miranda IM, Salvador A, Azevedo MM, Munro CA et al (2013) Determination of chitin content in fungal cell wall: an alternative flow cytometric method. Cytometry A 83(3):324–328
Throndset W, Kim S, Bower B, Lantz S, Kelemen B, Pepsin M et al (2010) Flow cytometric sorting of the filamentous fungus Trichoderma reesei for improved strains. Enzyme Microb Technol 47(7):335–341
Steudler S, Böhmer U, Weber J, Bley T (2014) Biomass measurement by flow cytometry during solid-state fermentation of basidiomycetes. Cytometry A. doi:10.1002/cyto.a.22592
Griffin DH (1996) Fungal physiology. Wiley, New York, 476 p
Frostegård A, Tunlid A, Bååth E (2011) Use and misuse of PLFA measurements in soils. Soil Biol Biochem 43(8):1621–1625
Frostegård A, Bååth E (1996) The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil. Biol Fertil Soils 22(1):59–65
Córdova-López J, Gutiérrez-Rojas M, Huerta S, Saucedo-Castañeda G, Favela-Torres E (1996) Biomass estimation of Aspergillus niger growing on real and model supports in solid state fermentation. Biotechnol Tech 10(1):1–6
Favela-Torres E, Cordova-López J, García-Rivero M, Gutiérrez-Rojas M (1998) Kinetics of growth of Aspergillus niger during submerged, agar surface and solid state fermentations. Process Biochem 33(2):103–107
Saucedo-Castañeda G, Trejo-Hernández MR, Lonsane BK, Navarro JM, Roussos S, Dufour D et al (1994) On-line automated monitoring and control systems for CO2 and O2 in aerobic and anaerobic solid-state fermentations. Process Biochem 29(1):13–24
Ikasari L, Mitchell DA (1998) Oxygen uptake kinetics during solid state fermentation with Rhizopus oligosporus. Biotechnol Tech 12(2):171–175
Larroche C, Gros JB (1992) Characterization of the growth and sporulation behavior of Penicillium roquefortii in solid substrate fermentation by material and bioenergetic balances. Biotechnol Bioeng 39(8):815–827
Desgranges C, Georges M, Vergoignan C, Durand A (1991) Biomass estimation in solid state fermentation II. On-line measurements. Appl Microbiol Biotechnol 35(2):206–209
Sakurai Y, Misawa S, Shiota H (1985) Growth and respiratory activity of Aspergillus oryzae grown on solid state medium. Agric Biol Chem 49(3):745–750
Dhandapani B, Mahadevan S, Dhilipkumar SS, Rajkumar S, Mandal AB (2012) Impact of aeration and agitation on metabolic heat and protease secretion of Aspergillus tamarii in a real-time biological reaction calorimeter. Appl Microbiol Biotechnol 94(6):1533–1542
Anand S, Rati ER (2006) An enzyme-linked immunosorbent assay for monitoring of Aspergillus ochraceus growth in coffee powder, chilli powder and poultry feed. Lett Appl Microbiol 42(1):59–65
Dubey AK, Suresh C, Kumar SU, Karanth NG (1998) An enzyme-linked immunosorbent assay for the estimation of fungal biomass during solid-state fermentation. Appl Microbiol Biotechnol 50(3):299–302
Kaufmann K, Rossier N, Oberholzer H (2010) Niederhäusern A v. Vergleich dreier Methoden zur Langzeitbeobachtung der biologischen Bodenaktivität. Publ Bodenkd Ges Schweiz 30:75–80
West AW, Ross DJ, Cowling JC (1986) Changes in microbial C, N, P and ATP contents, numbers and respiration on storage of soil. Soil Biol Biochem 18(2):141–148
Davey CL, Peñaloza W, Kell DB, Hedger JN (1991) Real-time monitoring of the accretion of Rhizopus oligosporus biomass during the solid-substrate tempe fermentation. World J Microbiol Biotechnol 7(2):248–259
Jones PCT, Mollison JE, Quenouille MH (1948) A technique for the quantitative estimation of soil micro-organisms. J Gen Microbiol 2(1):54–69
Hill DR (1996) Thin agar film for enhanced fungal growth and microscopic viewing in a new sealable fungal culture case. J Clin Microbiol 34(9):2140–2142
Kasai K, Horikoshi T (1997) Estimation of fungal biomass in the decaying cones of Pinus densiflora. Mycoscience 38(3):313–322
Lodge DJ, Ingham ER (1991) A comparison of agar film techniques for estimating fungal biovolumes in litter and soil. Agric Ecosyst Environ 34(1):131–144
Ramana Murthy MV, Thakur MS, Karanth NG (1993) Monitoring of biomass in solid state fermentation using light reflectance. Biosens Bioelectron 8(1):59–63
Zornoza R, Guerrero C, Mataix-Solera J, Scow KM, Arcenegui V, Mataix-Beneyto J (2008) Near infrared spectroscopy for determination of various physical, chemical and biochemical properties in Mediterranean soils. Soil Biol Biochem 40(7):1923–1930
Brandl H (2013) Detection of fungal infection in Lolium perenne by fourier transform infrared spectroscopy. J Plant Ecol 6(4):265–269
Beare MH, Neely CL, Coleman DC, Hargrove WL (1990) A substrate-induced respiration (SIR) method for measurement of fungal and bacterial biomass on plant residues. Soil Biol Biochem 22(5):585–594
Lin Q, Brookes PC (1999) An evaluation of the substrate-induced respiration method. Soil Biol Biochem 31(14):1969–1983
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Steudler, S., Bley, T. (2015). Better One-Eyed than Blind—Challenges and Opportunities of Biomass Measurement During Solid-State Fermentation of Basidiomycetes. In: Krull, R., Bley, T. (eds) Filaments in Bioprocesses. Advances in Biochemical Engineering/Biotechnology, vol 149. Springer, Cham. https://doi.org/10.1007/10_2014_300
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