Abstract
Proteins are the cell’s workhorses as they are involved in essentially all cellular activities. From the birth of a daughter cell until its death during apoptosis, proteins perform various functions as needed. Such versatility can be attributed to the seemingly infinite ways that the amino acids are sequenced in a polypeptide. The polypeptide backbone and each amino acid functional group contribute unique intermolecular interactions that determine the protein’s shape and size. However, more importantly, these interactions determine protein function, that is, its ability to interact with the external environment. For the same reasons, proteins make ideal biorecognition elements for sensors (see below and Fig. 1). Protein enzymes and receptors developed unmatched sensitivity and selectivity for their substrates through millions of years of natural selection. In contrast, chemically synthesized artificial receptors seldom approach the same level of sophistication in ligand selectivity, sensitivity range and ease of production. In addition, there is available to the sensor researcher an ever expanding library of proteins for various ligands important in all manner of application such as disease biomarkers, toxins, contaminants, drugs, etc. Using tools of genetic engineering, researchers can even go beyond known existing wild type proteins by introducing useful functional groups thereby tuning or even altering protein sensitivity and selectivity. This can be done by mutagenesis and directed evolution or by incorporation of unnatural amino acids during translation. Additionally, genes for the protein of interest can be inserted in vectors predesigned with handles for affinity purification or immobilization on a surface. Recombinant proteins can then be produced in large amounts in appropriate cellular hosts with very high reproducibility. In addition, chemical reactions involving the amino acids have become standard protocols. Thus, there are thousands of dyes, magnetic beads, nanoparticles or quantum dots designed to form covalent bonds with amino groups, sulfhydryl groups, carboxylic groups and other reactive functionalities in amino acids. It is not uncommon to conduct combinations of techniques, for example, the introduction of fluorescent labels or probes to proteins require in many cases, site-directed mutagenesis followed by covalent bonding of the fluorescent dye. Accordingly, two or more proteins can be combined to create hybrid or fusion proteins with multiple or altered functions. Indeed, research involving the green fluorescent protein and fluorescent proteins of a variety of colors has expanded by leaps and bounds in the last decade. Because these fluorescent proteins can be genetically encoded in cells, it is possible to observe various cellular processes in vivo. However, this topic has been reviewed extensively in the literature and, thus, will not be expounded on in this chapter.
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Haugland R (2005) The handbook: a guide to fluorescent probes and labeling technologies, 10th edn. Molecular Probes – Invitrogen Corp, Eugene, OR
VanEngelenburg SB, Palmer AE (2008) Fluorescent biosensors of protein function. Curr Opin Chem Biol 12:60–65
Ai H-W, Hazelwood KL, Davidson MW, Campbell RE (2008) Fluorescent protein FRET pairs for ratiometric imaging of dual biosensors. Nat Methods 5(5):401–403
Guiliano KA, Taylor DL (1998) Fluorescent-protein biosensors: new tools for drug discovery. TIBTECH 16:135–140
Tam R, Saier MH (1993) Structural, functional and evolutionary relationships among extracellular solute-binding receptors of bacteria. Microbiol Rev 57(2):320–346
Medintz IL, Deschamps JR (2006) Maltose binding protein: a versatile platform for prototyping biosensing. Curr Opin Biotechnol 17:17–21
Sakaguchi-Mikami A, Taneoka A, Yamoto R, Ferri S, Sode K (2008) Engineering of ligand specificity of periplasmic binding protein for glucose. Biotech Lett. 30(8):1453–1460.
Amiss TJ, Sherman DB, Nycz CM, Andaluz SA, Pitner JB (2007) Engineering and rapid selection of a low-affinity glucose/galactose binding protein for a glucose biosensor. Protein Sci 16:2350–2359
Looger LL, Dwyer MA, Smith JJ, Hellinga HW (2003) Computational design of receptor and sensor proteins with novel functions. Nature 423:185.
Hsiao CD, Sun YJ, Rose J, Wang BC (1996) The crystal structure of glutamine-binding protein from Escherichia coli. J Mol Biol 262:225–242
Sun YJ, Rose J, Wang BC, Hsiao CD (1998) The crystal structure of glutamine-binding protein complexed with glutamine at 1.94 Å resolution: comparisons with other amino acid binding protein. J Mol Biol 278:219–229
Messina TC, Talaga DS (2007) Protein free energy landscapes remodeled by ligand binding. Biophys J 93:579–585
Mowbray SL, Petsko GA (1983) The X-ray structure of the periplasmic galactose binding protein from Salmonella typhimurium at 3.0-Å resolution. J Biol Chem 258(13):7991–7997
Borrok MJ, Kiessling LL, Forest KT (2007) Conformational changes of glucose/galactose binding protein illuminated by open, unliganded and ultra-high-resolution ligand bound structures. Protein Sci 16:1032–1041
Lorimer RM, Smith JJ, Dwyer MA, Looger LL, Sali KM, Paavola CD, Rizk SS, Sadigov SS, Conrad DW, Loew L, Hellinga HW (2002) Construction of a fluorescent biosensor family. Protein Sci 11:2655–2675
Thomas KJ, Sherman DB, Amiss TJ, Andaluz SA, Pitner JB (2006) A long-wavelength fluorescent glucose biosensor based on bioconjugates of galactose/glucose binding protein and Nile Red derivatives. Diab Technol Ther 8(3):261–268
Sherman DB, Pitner JB, Ambroise A, Thomas KJ (2006) Synthesis of thiol-reactive, long wavelength fluorescent phenoxazine derivatives for biosensor applications. Bioconjug Chem 17(2):387–392
Hsieh HV, Pfeiffer ZA, Amiss TJ, Sherman DB, Pitner JB (2004) Direct detection of glucose by surface plasmon resonance with bacterial glucose/galactose binding protein. Biosens Bioelectron 19(7):653–660
Hamorsky KT, Ensor CM, Wei Y, Daunert S (2008) A bioluminescent molecular switch for glucose. Angew Chem Int Ed 47:3718–3721
Salins LL, DeoSK, Daunert S (2004) Phosphate binding protein as the biorecognition element in a biosensor for phosphate. Sens Actuators B Chem 97(1):81–89
Ehrick JD, Deo SK, BrowningTW, Bachas LG, Madou MJ, Daunert S (2005) Genetically engineered protein in hydrogels tailors stimuli-responsive characteristics. Nat Mater 4(4):298–302
Der BS, Dattelbaum JD (2007) Construction of a reagentless glucose biosensor using molecular exciton luminescence. Anal Biochem 375:132–140
Dattelbaum JD, Looger LL, Benson DE, Sali KM, Thompson RB, Hellinga HW (2005) Analysis of allosteric signal transduction mechanisms in an engineered fluorescent maltose biosensor. Protein Sci 14:284–289
Tolosa L, Harrison R, Rao G (2007) Design of optical protein-based biosensors. Proceedings of AsiaSense 2007 – the third Asian conference on sensors, new domains in chemical, biological and physical sensing, pp 61–64.
Marvin JS, Hellinga HW (1998) Engineering biosensors by introducing fluorescent allosteric signal transducers: construction of a novel glucose sensor. J Am Chem Soc 120:7–11
Ge X, Tolosa L, Rao G (2004) Dual-labeled glucose binding protein for ratiometric measurements of glucose. Anal Chem 76:1403–1410
Tolosa L, Ge X Rao G (2003) Reagentless optical sensing of glutamine using a dual-emitting glutamine-binding protein. Anal Biochem 314:199–205
Dattelbaum JD, Lakowicz JR, (2001) Optical determination of glutamine using a genetically engineered protein. Anal Biochem 291(1):89–95
Bartolome A, Bardliving C, Rao G, Tolosa L (2005) Fatty acid sensor for low-cost lifetime-assisted ratiometric sensing using a fluorescent fatty acid binding protein. Anal Biochem 345:133–139
Ge X, Lam HT, Swati MJ, LaCourse WR, Rao G, Tolosa L, (2007) Comparing the performance of the optical glucose assay based on the glucose binding protein with high performance anion-exchange chromatography with pulsed electrochemical detection: efforts to design a low-cost point-of-care glucose sensor. J Diab Sci Technol 1(6):864–872
Lam H, Kostov Y, Rao G, Tolosa L (2008) Low-cost optical lifetime assisted ratiometric glutamine sensor based on glutamine binding protein. Anal Biochem 383:61–67
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Tolosa, L. (2009). On the Design of Low-Cost Fluorescent Protein Biosensors. In: Rao, G. (eds) Optical Sensor Systems in Biotechnology. Advances in Biochemical Engineering/Biotechnology, vol 116. Springer, Berlin, Heidelberg. https://doi.org/10.1007/10_2008_39
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DOI: https://doi.org/10.1007/10_2008_39
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