Skip to main content

Metabolic Profiling for Transgenic Forest Tre es

  • Chapter
Landscapes, Genomics and Transgenic Conifers

Part of the book series: Managing Forest Ecosystems ((MAFE,volume 9))

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 149.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 199.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

7. References

  • BINO, R.J., R.D. HALL, O. FIEHN, J. KOPKA, K. SAITO et al., 2004 Potential of metabolomics as a functional genomics tool. Trends in Plant Science 9: 418-425.

    Article  CAS  PubMed  Google Scholar 

  • BOEHMERT, K., I. BALBO, J. KOPKA, V. MITTENDORF, C. NAWRATH, Y. PORIER, G. TISCHENDORF, R.N. TRETHEWAY and L. WILLMIZER 2000 Transgenic Arabidopsis plants can accumulate polyhydroxybutyrate to up 4 % of their fresh weight. Planta 211: 841-845.

    Article  Google Scholar 

  • BOERJAN, W., J. RALPH and M. BAUCHER 2003 Lignin biosynthesis. Annual Rev. Plant Biol. 54: 519-546.

    Article  CAS  Google Scholar 

  • BRYANT, J.P., F.D. PROVENZA, J. PASTOR, P.B. REICHARDT, T.P. CLAUSEN and J.T. DU TOIT 1991 Interaction between woody plants and browsing mammals mediated by secondary metabolites. Annual Review of Ecology and Systematics 22: 431-446.

    Article  Google Scholar 

  • BRYANT, J. AND R. JULKUNENTIITTO 1995 Ontogenetic development of chemical defense by seedling resin birch: Energy cost of defense production. J. Chem. Ecol. 21:883-896.

    Article  CAS  Google Scholar 

  • CHIKWAMBA, R.K., M.P. SCOTT, L.B. MEJIA, H.S. MASON and K. WANG 2003 Localization of a bacterial protein in starch granules of transgenic maize kernels. Proc. Natl. Acad. Sci. U.S.A. 100: 11127-11132.

    Article  CAS  PubMed  Google Scholar 

  • DIOUF, D. 2003. Genetic transformation of forest trees. African Journal of Biotechnology 2: 328-333.

    CAS  Google Scholar 

  • EDWARDS, D. and J. BATLEY 2004 Plant bioinformatics: from genome to phenome. Trends in Biotechnology 22: 232-237.

    Article  CAS  PubMed  Google Scholar 

  • FIEHN, O. 2002 Metabolomics - the link between genotypes and phenotypes. Plant Mol. Biol. 48: 155-171.

    CAS  Google Scholar 

  • FIEHN, O., J. KOPKA, P. DORMANN, T. ALTMANN, R.N. TRETHEWAY and L. WILLMITZER 2000 Metabolic profiling represents a novel and powerful approach for plant functional genomics. Nature Biotechnology 18: 1157-1161.

    Article  CAS  PubMed  Google Scholar 

  • FILLATTI, JJ., J. SELMER, B. MCCOWN, B. HAISSIG and L. COMAI 1987 Agrobacterium mediated transformation and regeneration of Populus. Mol. Gen. Genet. 206: 192-199.

    Article  CAS  Google Scholar 

  • HAGERMAN, A. 1988 Extraction of tannin from fresh and preserved leaves. J. Chem. Ecol. 14: 453-461.

    Article  CAS  Google Scholar 

  • HĂ„GGMAN, H., A.D. FREY, L. RYYNĂ„NEN, T. ARONEN, R. JULKUNENTIITTO, H. TIIMONEN, K. PIHAKASKIMAUNSBACH, S. JOKIPII, X. CHEN and P.T. KALLIO 2003 Expression of Vitreoscilla haemoglobin in hybrid aspen (Populus tremula x tremuloides). Plant Biotechnology Journal 1: 287-300.

    Article  PubMed  Google Scholar 

  • HERSCHBACH, C. and S. KOPRIVA 2002 Transgenic trees as tools in tree and plant physiology. Trees 16: 250-261.

    Article  CAS  Google Scholar 

  • IHMELS, J., G. FRIEDLANDER, S. BERGMANN, O. SARIG and N. BARKAI 2002 Revealing modular organization in the yeast transcriptional network. Nat.Genet. 31: 370-377.

    CAS  PubMed  Google Scholar 

  • IHMELS, J., R. LEVY and N. BARKAI 2004 Principles of transcriptional control in the metabolic network of Saccaharomyces cerevisiae. Nature Biotechnology 22: 86-92.

    Article  CAS  PubMed  Google Scholar 

  • JULKUNENTIITTO, R., M. KIRSI and T. RIMPILĂ„INEN 1988 Methods of the analysis and the aroma composition of some species of herbal teas. Lebens. Wiss. Techn. 21: 36-40.

    CAS  Google Scholar 

  • JULKUNENTIITTO, R., J. BRYANT, H. ROININEN and P. KUROPAT 1995 Slight tissue wounding fails to induce consistent chemical defense in three willow (Salix spp.) clones. Oecologia 101: 467-471.

    Article  Google Scholar 

  • JULKUNENTIITTO, R. and S. SORSA 2001 Testing the drying methods for willow flavonoids, tannins and salicylates. J. Chem Ecol. 27: 779-789.

    Article  CAS  Google Scholar 

  • KRIEGER, C. J., P. ZHANG, L.A. MUELLER, A. WANG, S. PALEY, M. ARNAUD, J. PICK, S.Y. RHEE and P.D. KARP 2004 MetaCyc: a multiorganism database of metabolic pathways and enzymes. Nucleic Acids Res. 32: 438-442.

    Article  Google Scholar 

  • LAITINEN, M.-L., R. JULKUNENTIITTO and M. ROUSI 2002 Foliar phenolic composition of European white birch during bud and leaf development. Physiologia Plantarum 114: 450-460.

    Article  CAS  PubMed  Google Scholar 

  • LAITINEN, M.-L., R. JULKUNENTIITTO, K. YAMAJI, J. HEINONEN AND M. ROUSI 2004 Variation in bark secondary compounds between and within clones: implication for herbivory. Oikos 104: 316-326.

    Article  CAS  Google Scholar 

  • LINDROTH, R. and P. A. KOSS 1996 Preservation of Salicaceae leaves for phytochemical analyses: Further assesment. J. Chem Ecol. 22: 765-771.

    Article  CAS  Google Scholar 

  • LUCKNER, M.K., K. MOTHES and L. NOVER (eds) 1976 Secondary Metabolism and Coevolution, Nova Acta Leopoldina Suppl. No. 7, Deutsche Academie der Naturforscher Leopoldina

    Google Scholar 

  • ORIANS, C.M. 1995 Preserving leaves for tannin and phenolic glycoside analyses. J. Chem Ecol. 21: 1235-1243.

    Article  CAS  Google Scholar 

  • PAN, H. and L.N. LUNDGREN 1995 Phenolic extractives from root bark of Picea abies. Phytochemistry 39: 1423-1428.

    Article  CAS  PubMed  Google Scholar 

  • PEĂ‘A, L. and A. SÉGUIN 2001 Recent advances in the genetic transformation of trees. Trends in Biotechnology 12: 500-506.

    Article  Google Scholar 

  • PHELPS, T.J., A.V. PALUMBO and A. S. BELIAEV 2002 Metabolomics and microarrays for improved understanding of phenotypic characteristics controlled by both genomics and environmental constraints. Current Opinion in Biotechnology 13: 20-24.

    Article  CAS  PubMed  Google Scholar 

  • ROESSNER, U., C. WAGNER, J. KOPKA, R.N. TRETHEWEY AND L. WILLMITZER 2000 Simultaneous analysis of metabolites in potato tuber by gas chromatography- mass spectrometry. Plant J. 23: 131-142.

    Article  CAS  PubMed  Google Scholar 

  • ROESSNER, U., L. WILLMITZER and A.R. FERNIE 2000 High-resolution metabolic phenotyping of genetically and environmentally diverse potato tuber systems. Identification of phenocopies. Plant Physiology 127: 749-764.

    Article  Google Scholar 

  • ROESSNERTUNALI, U., B. HAGEMANN, A. LYTOVCHENKO, F. CARRARI, C. BRUEDIGAM, D. GRANOT and A. R. FERNIE 2003 Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development. Plant Physiology 133: 84-99.

    Article  CAS  Google Scholar 

  • SEDEROFF, RR. 1995 Forest trees. In The transformation of plants and soil microorganisms (Wang K, A. Herrera-Estrella and M. Van Montagu, eds.). Cambridge; Cambridge University Press, pp 150-163.

    Google Scholar 

  • SEDEROFF, RR., J.J. MACKAY, J. RALPH and R.D. HATFIELD 1999 Unexpected variation in lignin. Current Opinion in Plant Biology 2: 145-152.

    Article  CAS  PubMed  Google Scholar 

  • SEGRÉ, D. 2004 The regulatory software of cellular metabolism. Trends in Biotechnology 22: 261-265.

    Article  PubMed  Google Scholar 

  • SEIGLER, D.S. 1998 Plant Seconday Metabolism. Kluwer Academic Publishers, Dordrecht, Netherlands.

    Google Scholar 

  • STEINBRECHER, R., K. HAUFF, H. HAKOLA and J. RĂ–SSLER 1999 A revised parameteriation for emission modelling of isoprenoids for boreal trees. Biphorep Scientific final report. EC, Belgium, pp. 29-43.

    Google Scholar 

  • STITT, M. and A.R. FERNIE 2003 From measurements of metabolites to metabolomics: an “on the fly” perspective illustrated by recent studies of carbon-nitrogen interactions. Current Opinion in Plant Biotechnology 14: 136-144.

    Article  CAS  Google Scholar 

  • TEGELBERG, R., R. JULKUNENTIITTO and P. APHALO 2001 The effect of the long-term UV-radiation on birch (Betula pendula Roth) seedlings. Global Change Biology 7: 839-848.

    Article  Google Scholar 

  • TEGELBERG, R. and R. JULKUNENTIITTO 2001 Quantitative changes in secondary metabolites of dark-leaved willow (Salix myrsinifolia Salisb.) exposed to enhanced ultraviolet-B radiation. Physiologia Plantarum 113: 541-547.

    Article  CAS  Google Scholar 

  • URBANCZYKWOCHNIAK, E., A. LUEDEMANN, J. KOPKA, J. SELBIG, U. ROESSNERTUNALI, L. WILLMIZER and A.R. FERNIE 2003 Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Reports 4: 989-993.

    Article  CAS  Google Scholar 

  • WATERMAN, P.G. and S.MOLE 1994 Analysis of plant phenolic metabolites. Blackwell Scientific Publications.

    Google Scholar 

  • WECKWERTH, W. and O. FIEHN 2002 Can we discover novel pathways using metabolomic analysis? Current Opinion in Biotechnology 13: 156-160.

    Article  CAS  PubMed  Google Scholar 

  • ZAMIR, D. 2001 Improving plant breeding with exotic genetic libraries. Nature Rev. Genet. 2: 983-989.

    CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2006 Springer

About this chapter

Cite this chapter

Häggman, H., Julkunen-Tiitto, R. (2006). Metabolic Profiling for Transgenic Forest Tre es. In: Williams, C. (eds) Landscapes, Genomics and Transgenic Conifers. Managing Forest Ecosystems, vol 9. Springer, Dordrecht. https://doi.org/10.1007/1-4020-3869-0_7

Download citation

Publish with us

Policies and ethics