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Conformational Stability of Biomolecules in Solution

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Molecular Theory of Solvation

Part of the book series: Understanding Chemical Reactivity ((UCRE,volume 24))

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References

  1. C. B. Anfinsen, E. Haber, M. Sela, and F. H. White Jr., Proc. Natl. Acad. Sci. USA, 47, 1309 (1961).

    CAS  Google Scholar 

  2. C. B. Anfinsen, Science, 181, 223 (1973).

    CAS  Google Scholar 

  3. J. D. Bryngelson, J. N. Onuchic, N. D. Socci, and P. G. Wolynes, PROTEINS: Struc. Funct. Genet., 21, 167 (1995).

    Article  CAS  Google Scholar 

  4. K. A. Dill and H. S. Chan, Nature Struc. Biol., 4, 10 (1997).

    CAS  Google Scholar 

  5. E. I. Shaknovitch, Curr. Opin. Struc. Biol., 7, 29 (1997).

    Google Scholar 

  6. S. Wodak and M. J. Rooman, Curr. Opin. Struc. Biol., 3, 247 (1993).

    CAS  Google Scholar 

  7. H. Kawai, T. Kikuchi, and Y. Okamoto, Protein Engng., 3, 85 (1989).

    CAS  Google Scholar 

  8. A. Mitsutake, Y. Sugita, and Y. Okamoto, Biopolymers, 60, 96 (2001).

    Article  CAS  Google Scholar 

  9. B. M. Pettitt and M. Karplus, Chem. Phys. Lett., 121, 194 (1985).

    CAS  Google Scholar 

  10. B. M. Pettitt and M. Karplus, J. Am. Chem. Soc., 107, 1166 (1985).

    Article  CAS  Google Scholar 

  11. J. Perkyns and B. M. Pettitt, Chem. Phys. Lett., 190, 626 (1992).

    Article  CAS  Google Scholar 

  12. J. Perkyns and B. M. Pettitt, J. Chem. Phys., 97, 7656 (1992).

    Article  CAS  Google Scholar 

  13. M. Kinoshita, Y. Okamoto, and F. Hirata, J. Comput. Chem., 18, 1320 (1997).

    Article  CAS  Google Scholar 

  14. M. Kinoshita, Y. Okamoto, and F. Hirata, J. Comput. Chem., 19, 1724 (1998).

    Article  CAS  Google Scholar 

  15. M. Kinoshita, Y. Okamoto, and F. Hirata, J. Am. Chem. Soc., 120, 1855 (1998).

    Article  CAS  Google Scholar 

  16. M. Kinoshita, Y. Okamoto, and F. Hirata, J. Chem. Phys., 110, 4090 (1999).

    Article  CAS  Google Scholar 

  17. A. Mitsutake, M. Kinoshita, Y. Okamoto, and F. Hirata, Chem. Phys. Lett., 329, 295 (2000).

    Article  CAS  Google Scholar 

  18. M. Kinoshita, Y. Okamoto, and F. Hirata, J. Chem. Phys., 107, 1586 (1997).

    Article  CAS  Google Scholar 

  19. H. J. C. Berendsen, J. R. Grigera, and T. P. Straatsma, J. Phys. Chem., 91, 6269 (1987).

    Article  CAS  Google Scholar 

  20. Y. Okamoto, M. Fukugita, T. Nakazawa, and H. Kawai, Protein Engng., 4, 639 (1991).

    Article  CAS  Google Scholar 

  21. M. J. Sippl, G. Nemethy, and H. A. Scheraga, J. Phys. Chem., 88, 6231 (1984).

    Article  CAS  Google Scholar 

  22. S. J. Singer and D. Chandler, Mol. Phys., 55, 621 (1985).

    CAS  Google Scholar 

  23. R. A. Pierotti, Chem. Rev., 76, 717 (1976).

    Article  CAS  Google Scholar 

  24. W. H. Graham, E. S. Carter II, and Rickey P. Hickes, Biopolymers, 32, 1755 (1992).

    Article  CAS  Google Scholar 

  25. M. Kinoshita, Y. Okamoto, and F. Hirata, J. Mol. Liq., 90, 195 (2001).

    Article  CAS  Google Scholar 

  26. A. Mitsutake, U. H. E. Hansmann, and Y. Okamoto, J. Mol. Graphics Mod., 16, 226 (1998).

    CAS  Google Scholar 

  27. A. Kovalenko and F. Hirata, J. Chem. Phys., 110, 10095 (1999).

    Article  CAS  Google Scholar 

  28. A. Kovalenko and F. Hirata, J. Chem. Phys., 113, 2793 (2000).

    CAS  Google Scholar 

  29. A. Kovalenko, F. Hirata, and M. Kinoshita, J. Chem. Phys., 113, 9830 (2000).

    CAS  Google Scholar 

  30. K.-M. Pan, M. Baldwin, J. Nguyen, M. Gasset, A. Serban, D. Groth, I. Mehlhorn, Z. Huang, R. J. Fletterick, F. E. Cohen, and S. B. Prusiner, Proc. Natl. Acad. Sci. USA, 90, 10962 (1993).

    CAS  Google Scholar 

  31. R. Riek, S. Hornemann, G. Wider, M. Billeter, R. Glockshuber, and K. Wuthrich, Nature, 382, 180 (1996).

    Article  CAS  Google Scholar 

  32. D. R. Booth, M. Sunde, V. Bellotti, C. V. Robinson, W. L. Hutchinson, P. E. Fraser, P. N. Hawkins, C. M. Dobson, S. E. Radford, C. C. F. Blake, and M. B. Pepys, Nature, 385, 787 (1997).

    Article  CAS  Google Scholar 

  33. K. Kuwajima, Circular Dichroism and the Conformational Analysis of Biomolecules, edited by G. D. Fasman (Plenum, New York, 1996), pp. 159–182.

    Google Scholar 

  34. K. Kuwajima, H. Yamaya, S. Miwa, S. Sugai, and T. Nagamura, FEBS Lett., 221, 115 (1987).

    Article  CAS  Google Scholar 

  35. D. Hamada, S. Segawa, and Y. Goto, Nature Struct. Biol., 3, 868 (1996).

    Article  CAS  Google Scholar 

  36. J. W. Nelson and N. R. Kallenbach, PROTEINS: Struct. Funct. Genet., 1, 211 (1986).

    CAS  Google Scholar 

  37. S. Segawa, T. Fukuno, K. Fujiwara, and Y. Noda, Biopolymers, 31, 497 (1991).

    Article  CAS  Google Scholar 

  38. H. J. Dyson and P. E. Wright, Curr. Opin. Struct. Biol., 3, 60 (1993).

    Article  CAS  Google Scholar 

  39. P. D. Thomas and K. A. Dill, Protein Sci., 2, 2050 (1993).

    CAS  Google Scholar 

  40. D. Hamada, Y. Kuroda, T. Tanaka, and Y. Goto, J. Mol. Biol., 254, 737 (1995).

    Article  CAS  Google Scholar 

  41. K. Shiraki, K. Nishikawa, and Y. Goto, J. Mol. Biol., 245, 180 (1995).

    Article  CAS  Google Scholar 

  42. D. Hamada and Y. Goto, J. Mol. Biol., 269, 479 (1997).

    Article  CAS  Google Scholar 

  43. N. Hirota, K. Mizuno, and Y. Goto, J. Mol. Biol., 275, 365 (1998).

    Article  CAS  Google Scholar 

  44. M. Kinoshita, Y. Okamoto, and F. Hirata, J. Am. Chem. Soc., 122, 2773 (2000).

    Article  CAS  Google Scholar 

  45. W. L. Jorgensen, J. Phys. Chem., 90, 1276 (1986).

    CAS  Google Scholar 

  46. M. Ramirez-Alvarado, F. J. Blanco, and L. Serrano, Nature Struct. Biol., 3, 604 (1996).

    CAS  Google Scholar 

  47. P. H. von Hippel and T. Schleich, Structure and Stability of Biological Macromolecules, edited by S. N. Timashe and G. D. Fasman, (Marcel Dekker, New York, 1969), p. 417.

    Google Scholar 

  48. K. I. Collins and M. W. Washabaugh, Q. Rev. Biophys., 18, 323 (1985).

    CAS  Google Scholar 

  49. R. L. Baldwin, Biophys. J., 71, 2056 (1996).

    Article  CAS  Google Scholar 

  50. M. Ries-Kautt and A. Ducruix, Methods Enzymol., 276, 23 (1997).

    CAS  Google Scholar 

  51. Y. Goto, N. Takahashi, and A. L. Fink, Biochemistry, 29, 3480 (1990).

    Article  CAS  Google Scholar 

  52. W. F. McDevitand F. A. Long, J. Am. Chem. Soc., 74, 1773 (1952).

    Google Scholar 

  53. P. K. Nandi and D. R. Robinson, J. Am. Chem. Soc., 94, 1308 (1972).

    CAS  Google Scholar 

  54. C. Mavroyannis and M. J. Stephen, Mol. Phys., 5, 629 (1962).

    CAS  Google Scholar 

  55. W. L. Masterton, D. Bolocofsky, and T. P. Lee, J. Phys. Chem., 75, 2809 (1971).

    Article  CAS  Google Scholar 

  56. M. Kinoshita and F. Hirata, J. Chem. Phys., 106, 5202 (1997).

    Article  CAS  Google Scholar 

  57. T. Imai, M. Kinoshita, and F. Hirata, Bull. Chem. Soc. Jpn., 73, 1113 (2000).

    Article  CAS  Google Scholar 

  58. F. Hofmeister, Arch. Exp. Pathol. Pharmakol., 24, 247 (1888).

    Google Scholar 

  59. M. Kinoshita, Y. Okamoto, and F. Hirata, Chem. Phys. Lett., 297, 433 (1998).

    Article  CAS  Google Scholar 

  60. P. W. Bridgman, J. Biol. Chem., 19, 511 (1914).

    CAS  Google Scholar 

  61. N. Matubayasi and R. M. Levy, J. Phys. Chem., 100, 2681 (1995).

    Google Scholar 

  62. D. M. Lockwood and P. J. Rossky, J. Phys. Chem. B, 103, 1982 (1999).

    Article  CAS  Google Scholar 

  63. J. G. Kirkwood and F. P. Bu, J. Chem. Phys., 19, 774 (1951).

    CAS  Google Scholar 

  64. T. Imai, M. Kinoshita, and F. Hirata, J. Chem. Phys., 112, 9469 (2000).

    Article  CAS  Google Scholar 

  65. A. A. Zamyatnin, Ann. Rev. Biophys. Bioeng., 13, 145 (1984).

    CAS  Google Scholar 

  66. M. Kikuchi, M. Sakurai, and K. Nitta, J. Chem. Eng. Data, 40, 935 (1995).

    Article  CAS  Google Scholar 

  67. M. Mizuguchi, M. Sakurai, and K. Nitta, J. Solution Chem., 26, 579 (1997).

    CAS  Google Scholar 

  68. Y. Yasuda, N. Tochio, M. Sakurai, and K. Nitta, J. Chem. Eng. Data, 43, 205 (1998).

    Article  CAS  Google Scholar 

  69. J. T. Edsall, Proteins, Amino Acids and Peptides, edited by E. J. Cohn and J. T. Edsall (Reinhold, New York, 1943), p. 155.

    Google Scholar 

  70. F. J. Millero, Chem. Rev., 71, 147 (1971).

    Article  CAS  Google Scholar 

  71. Y. Harano, T. Imai, A. Kovalenko, M. Kinoshita, and F. Hirata, J. Chem. Phys., 114, 9506 (2001).

    Article  CAS  Google Scholar 

  72. M. Kinoshita, T. Imai, A. Kovalenko, and F. Hirata, Chem. Phys. Lett., 348, 337 (2001).

    Article  CAS  Google Scholar 

  73. M. Kinoshita and F. Hirata, J. Chem. Phys., 104, 8807 (1996).

    Article  CAS  Google Scholar 

  74. M. Kinoshita and F. Hirata, J. Chem. Phys., 106, 5202 (1996).

    Google Scholar 

  75. J. Perkyns and B. M. Pettitt, Chem. Phys. Lett., 190, 626 (1992).

    Article  CAS  Google Scholar 

  76. J. Perkyns and B. M. Pettitt, J. Chem. Phys., 97, 7656 (1992).

    Article  CAS  Google Scholar 

  77. M. Kinoshita, Y. Okamoto, and F. Hirata, J. Comput. Chem., 18, 1320 (1997).

    Article  CAS  Google Scholar 

  78. M. J. Gillan, Mol. Phys., 38, 1781 (1979).

    CAS  Google Scholar 

  79. M. Kinoshita and M. Harada, Mol. Phys., 65, 599 (1988).

    CAS  Google Scholar 

  80. M. Kinoshita and M. Harada, Mol. Phys., 74, 443 (1991).

    CAS  Google Scholar 

  81. M. Kinoshita and M. Harada, Mol. Phys., 79, 145 (1993).

    CAS  Google Scholar 

  82. M. Kinoshita and M. Harada, Mol. Phys., 81, 1473 (1994).

    CAS  Google Scholar 

  83. D. R. Berard, M. Kinoshita, X. Ye, and G. N. Patey, J. Chem. Phys., 101, 6271 (1994).

    CAS  Google Scholar 

  84. M. Kinoshita and F. Lado, Mol. Phys., 82, 351 (1994).

    Google Scholar 

  85. M. Kinoshita and D. R. Berard, J. Comput. Phys., 124, 230 (1996).

    Article  CAS  Google Scholar 

  86. M. Kinoshita, Y. Okamoto, and F. Hirata, J. Comput. Chem., 19, 1724 (1998).

    Article  CAS  Google Scholar 

  87. A. Kovalenko, S. Ten-no, and F. Hirata, J. Comput. Chem., 20, 928 (1999).

    Article  CAS  Google Scholar 

  88. M. Kinoshita, Y. Okamoto, and F. Hirata, J. Am. Chem. Soc., 120, 1855 (1998).

    Article  CAS  Google Scholar 

  89. M. Kinoshita, Y. Okamoto, and F. Hirata, J. Chem. Phys., 110, 4090 (1999).

    Article  CAS  Google Scholar 

  90. A. Mitsutake, M. Kinoshita, Y. Okamoto, and F. Hirata, Chem. Phys. Lett., 329, 295 (2000).

    Article  CAS  Google Scholar 

  91. G. Zerah, J. Comput. Phys., 61, 280 (1985).

    Article  CAS  Google Scholar 

  92. A. Busigin and C. R. Phillips, Mol. Phys., 76, 89 (1992).

    CAS  Google Scholar 

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Kinoshita, M. (2004). Conformational Stability of Biomolecules in Solution. In: Hirata, F. (eds) Molecular Theory of Solvation. Understanding Chemical Reactivity, vol 24. Springer, Dordrecht. https://doi.org/10.1007/1-4020-2590-4_3

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  • DOI: https://doi.org/10.1007/1-4020-2590-4_3

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