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A Toolbox for Analysis of RNA Secondary Structure Based on Genetic Algorithm

  • I. TitovEmail author
  • D. Vorobiev
  • A. Palyanov
Chapter
  • 751 Downloads

Abstract

Versatile and rapid web-servers are timely for applied tasks requiring calculations of RNA secondary structure. We describe a web-server that integrates programs for analysis of RNA secondary structure. The server currently offers: solution of tasks of RNA folding and inverse folding based on the genetic algorithm; estimation of a sequence capability to form secondary structure; and an editor for interactive RNA folding with imposed constraints. Our server is publicly available at http://wwwmgs2.bionet.nsc.ru/mgs/systems/garna/.

Key words

RNA secondary structure genetic algorithm inverse folding 

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Copyright information

© Springer Science+Business Media, Inc. 2006

Authors and Affiliations

  1. 1.Institute of Cytology and GeneticsSiberian Branch of the Russian Academy of SciencesNovosibirskRussia
  2. 2.Novosibirsk State UniversityNovosibirskRussia

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