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MutM: Single C2C2 Zinc Finger-DNA Interaction

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Zinc Finger Proteins

Part of the book series: Molecular Biology Intelligence Unit ((MBIU))

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Abstract

The prokaryotic MutM protein is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidatively damaged bases, especially 8-oxoguanine, (N-glycosylase activity) and cleaves both the 3′- and 5′-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity). This enzyme possesses a zinc finger motif (-Cys-X2-Cys-X16-Cys-X2-Cys-) at the C terminus, which forms a β-hairpin loop. The positively charged Arg247 and Arg253 on the β-hairpin loop interact with the phosphate groups to pinch the backbone of the lesion-containing strand. This feature establishes that the zinc finger motif is essential for binding of MutM to DNA as well as its enzymatic activities.

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References

  1. Dizdaroglu M. Formation of an 8-oxoguanine moiety in deoxyribonucleic acid on γ-irradiation in aqueous solution. Biochemistry 1985; 24:4476–4481.

    Article  PubMed  CAS  Google Scholar 

  2. Wood ML, Dizdaroglu M, Gajewski E et al. Mechanistic studies of ionizing radiation and oxidative mutagenesis: genetic effects of a single 8-hydroxyguanine (7-hydro-8-oxoguanine) residue inserted at a unique site in a viral genome. Biochemistry 1990; 290:7024–7032.

    Article  Google Scholar 

  3. Michaels ML, Miller JH. The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine). J Bacteriol 1992; 174:6321–6325.

    PubMed  CAS  Google Scholar 

  4. Bhagwat M, Gerlt JA. 3′-and 5′-strand cleavage reactions catalyzed by the Fpg protein from Escherichia coli occur via successive beta-and delta-elimination mechanisms, respectively. Biochemistry 1996; 35:659–665.

    Article  PubMed  CAS  Google Scholar 

  5. Hazra TK, Izumi T, Boldogh I et al. Identification and characterization of a human DNA glycosylase for repair of modified bases in oxidatively damaged DNA. Proc Natl Acad Sci USA 2002; 99:3523–3528.

    Article  PubMed  CAS  Google Scholar 

  6. Morland I, Rolseth V, Luna L et al. Human DNA glycosylases of the bacterial Fpg/MutM superfamily: an alternative pathway for the repair of 8-oxoguanine and other oxidation products in DNA. Nucleic Acids Res 2002; 30:4926–4936.

    Article  PubMed  CAS  Google Scholar 

  7. Boiteux S, O’Connor TR, Lederer F et al. Homogeneous Escherichia coli FPG protein. A DNA glycosylase which excises imidazole ring-opened purines and nicks DNA at apurinic/apyrimidinic sites. J Biol Chem 1990; 265:3916–3922.

    PubMed  CAS  Google Scholar 

  8. O’Connor TR, Graves RJ, de Murcia G et al. Fpg protein of Escherichia coli is a zinc finger protein whose cysteine residues have a structural and/or functional role. J Biol Chem 1993; 268:9063–9070.

    PubMed  CAS  Google Scholar 

  9. Buchko GW, Hess NJ, Bandaru V et al. Spectroscopic studies of zinc(II)-and cobalt(II)-associated Escherichia coli formamidopyrimidine-DNA glycosylase: extended X-ray absorption fine structure evidence for a metal-binding domain. Biochemistry 2000; 39:12441–12449.

    Article  PubMed  CAS  Google Scholar 

  10. Tchou J, Michaels ML, Miller JH et al. Function of the zinc finger in Escherichia coli Fpg protein. J Biol Chem 1993; 268:26738–26744.

    PubMed  CAS  Google Scholar 

  11. Wink DA, Laval J. The Fpg protein, a DNA repair enzyme, is inhibited by the biomediator nitric oxide in vitro and in vivo. Carcinogenesis 1994; 15:2125–2129.

    Article  PubMed  CAS  Google Scholar 

  12. Sugahara M, Mikawa T, Kumasaka T et al. Crystal structure of a repair enzyme of oxidatively damaged DNA, MutM (Fpg), from an extreme thermophile, Thermus thermophilus HB8. EMBO J 2000; 19:3857–3869.

    Article  PubMed  CAS  Google Scholar 

  13. Fromme JC, Verdine GL. Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM. Nat Struct Biol 2002; 9:544–552.

    PubMed  CAS  Google Scholar 

  14. Scharer OD, Jiricny J. Recent progress in the biology, chemistry and structural biology of DNA glycosylases. Bioessays 2001; 23:270–281.

    Article  PubMed  CAS  Google Scholar 

  15. Sayle R, Milner-White EJ. RASMOL: biomolecular graphics for all. Trends Biochem. Sci 1995; 20:374.

    CAS  Google Scholar 

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Correspondence to Seiki Kuramitsu .

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Masui, R., Nakagawa, N., Kuramitsu, S. (2005). MutM: Single C2C2 Zinc Finger-DNA Interaction. In: Iuchi, S., Kuldell, N. (eds) Zinc Finger Proteins. Molecular Biology Intelligence Unit. Springer, Boston, MA. https://doi.org/10.1007/0-387-27421-9_6

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