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References
Bonfield, J.K., Smith, K.F., and Staden, R. (1995). A new DNA sequence assembly program. Nucleic Acids Research, 23(24):4992–9.
Bonfield, J.K.and Staden, R. (1995). The application of numerical estimates of base calling accuracy to DNA sequencing projects. Nucleic Acids Research, 23(8):1406–10.
Breuker, J. and der Velde, W.V., editors (1994). CommonKADS Library for Expertise Modelling. IOS Press Amsterdam.
Dear, S., Durbin, R., Hillier, L., Gabor, M., Thierry-Mieg, J., and Mott, R. (1998). Sequence assembly with CAFTOOLS. Genome Research, 8:260–7.
Dear, S. and Staden, R.(1992). A standard file format for data from DNA sequencing instruments. DNA Sequence, 3:107–10.
Ewing, B. and Green, P. (1998). Base-calling of automated sequencer traces using PHRED. II. error probabilities. Genome Research, 8(3):186–94.
Ewing, B., Hillier, L., Wendl, M.C., and Green, P. (1998). Base-calling of automated sequencer traces using phred. I. accuracy assessment. Genome Research, 8(3):175–85.
Gordon, D., Abajian, C., and Green, P. (1998). consed: A graphical tool for sequence finishing. Genome Research, 8(3):195–202.
Lario, A, Gonzalez, A, and Dorado, G. (1997). Automated laser-induced fluorescence DNA sequencing: Equalizing signal-to-noise ratios significantly enhances overall performance. Analytical Biochemistry, 247:30–3.
Lawrence, C.B. and Solovyev, V.V. (1994). Assignment of position-specific error probability to primary DNA sequence data. Nucleic Acids Research, 22(7):1272–80.
Lipshutz, R.J., Taverner, F., Hennessy, K., Hartzell, G., and Davis, R. (1994). DNA sequence confidence estimation. Genomics, 19(3):417–24.
Mott, R. (1998). Trace alignment and some of its applications. Bioinformatics, 14(1):92–7.
Pfisterer, T. and Wetter, T. (1999). Computer assisted editing of genomic sequences—why and how we evaluated a prototype. In: Puppe, F. (editor): XPS-99: Knowledge-Based Systems—Survey and Future Directions, 201-209, Springer.
Sedgewick, R. (1994). Algorithmen in C++. Addison-Wesley [Deutschland] GmbH.
Wang, L. and Jiang, T. (1994). On the complexity of multiple sequence alignment. Journal of Computational Biology, 1(4):337–48.
Wetter, T. and Pfisterer, T. (April 14–18, 1998). Modeling for scalability—ascending into automatic genome sequencing. In Eleventh Workshop on Knowledge Acquisition, Modeling and Management (KAW’98), Banff (Canada).
Wielinga, B.J., Schreiber, B.J., and Breuker, J.A. (1992). KADS: amodelling approach to knowledge engineering. Knowledge Acquisition, 4(1):5–54.
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© 2002 Kluwer Academic Publishers
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Chevreux, B., Pfisterer, T., Suhai, S. (2002). Automatic Assembly and Editing of Genomic Data. In: Suhai, S. (eds) Genomics and Proteomics. Springer, Boston, MA. https://doi.org/10.1007/0-306-46823-9_5
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DOI: https://doi.org/10.1007/0-306-46823-9_5
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