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Actinobacteria for Biotic Stress Management

  • Sunita Sakure
  • Sarika Bhosale
Chapter
Part of the Microorganisms for Sustainability book series (MICRO, volume 13)

Abstract

Actinobacteria are one of the active members of soil micro flora, and they play a key role in soil nutrients cycling and crop yield. Actinobacteria in rhizosphere of different plants produce various growth-promoting substances that stimulate growth of plants even under unfavorable environmental conditions such as drought, heavy metal-polluted soils, salinity, and nutrient deficiencies. Several Actinobacteria are involved in the solubilization of phosphate and zinc in soil which play significant role in number of metabolic pathways. They also produce plant hormones such as auxins and gibberellins which promote plant growth by increasing seed germination, root elongation, and dry weight of the root. Production of lytic enzymes such as amylase, protease, cellulase, chitinase, and glucanase plays an important role in plant disease control and in turn improves soil health. Various Actinobacteria are found to produce different types of siderophores which starve plant pathogens for iron and inhibit their growth. These multifaceted plant growth-promoting activities of Actinobacteria make them an agriculturally important organism. One of the most important members of this group known as Streptomyces species strain 5406 has also been practiced in China for biological control of pathogens of cotton plant. Actinobacterial role as PGP has been investigated in wheat, rice, and beans. Actinobacteria are also found to produce ACC (1-aminocyclopropane-1-carboxylate) deaminase which protects the plants under environmentally stressful conditions. This chapter summarizes the efforts of researchers to demonstrate the beneficial role of Actinobacteria on plant health and agricultural productivity.

Keywords

Actinobacteria PGP Biocontrol Stress management Trehalose ACC deaminase 

References

  1. Aldesuquy H, Mansour F, Abo-hamed S (1998) Effect of the culture filtrates of Streptomyces on growth and productivity of wheat plants. Folia Microbiol 43:465–470CrossRefGoogle Scholar
  2. Ashrafuzzaman M, Hossen F, Razi I, Hoque M, Islam M, Shahidullah S, Meon S (2009) Efficiency of plant growth-promoting rhizobacteria (PGPR) for the enhancement of rice growth. Afr J Biotech 8(7):1247–1252Google Scholar
  3. Becker JO (1988) Role of Siderophores in suppression of species and production of increased-growth response of wheat by fluorescent pseudomonads. Phytopathology 78(6):778CrossRefGoogle Scholar
  4. Běhal V (2000) Bioactive products from Streptomyces. Adv Appl Microbiol 47:113–156.  https://doi.org/10.1016/S0065-2164(00)47003-6CrossRefPubMedGoogle Scholar
  5. Belimov A, Hontzeas N, Safronova VI, Demchinskaya SV, Piluzza G (2005) Cadmium-tolerant plant growth-promoting bacteria associated with the roots of Indian mustard (Brassica juncea L. Czern.). Soil Biol Biochem 37:241–250CrossRefGoogle Scholar
  6. Bentley S, Brosch R, Gordon S, Hopwood D, Cole S (2004) Genomics of actinobacteria, the high G+C gram-positive bacteria. In: Fraser CM, Read T, Nelson KE (eds) Microbial genomes. Humana Press, Totowa, pp 333–360Google Scholar
  7. Bhardwaj D, Mohammad W, Ranjan Kumar S, Narendra (2014) Biofertilizers function as key player in sustainable agriculture by improving soil fertility, plant tolerance and crop productivity. Microbial Cell Fact 13:66CrossRefGoogle Scholar
  8. Boiteau RM, Mende DR, Hawco NJ, McIlvin MR, Fitzsimmons JN, Saito MA, Sedwick PN, DeLong EF, Repeta DJ (2016) Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean. PNAS 113(50):14237–14242.  https://doi.org/10.1073/pnas.1608594113CrossRefPubMedGoogle Scholar
  9. Burckner B, Blechschmidt D (1991) The gibberellin fermentation. Crit Rev Biotechnol 11:163–192CrossRefGoogle Scholar
  10. Cartieaux F, Nussaume L, Robaglia C (2003) Tales from the underground: molecular plant–rhizobacteria interactions. Plant Cell Environ 26:189–199CrossRefGoogle Scholar
  11. Challis G, Ravel J (2000) Coelichelin, a new peptide siderophore encoded by the Streptomyces coelicolor genome: structure prediction from the sequence of its non-ribosomal peptide synthetase. FEMS Microbiol Lett 187(2):111–114PubMedCrossRefGoogle Scholar
  12. Crawford HJ, Gur RC, Skolnick B, Gur RE, Benson DM (1993) Effects of hypnosis on regional cerebral blood flow during ischemic pain with and without suggested hypnotic analgesia. Int J Psychophysiol 15(3):181–195.  https://doi.org/10.1016/0167-8760(93)90002-7CrossRefPubMedGoogle Scholar
  13. Dastager S, Damare S (2013) Marine Actinobacteria showing phosphate solubilizing efficiency in Chorao Island, Goa, India. Curr Microbiol 66(5):421–427PubMedCrossRefGoogle Scholar
  14. Dunne C, Moenne-Loccoz Y, McCarthy J, Higgins P, Powell J, Dowling DN, O’Gara F (1998) Combining proteolytic and phloroglucino-producing bacteria for improved control of Pythium mediated damping off of sugar beet. Plant Pathol 47:299–307CrossRefGoogle Scholar
  15. El-Tarabily K (2008) A promotion of tomato (Lycopersiconesculentum Mill.) plant growth by rhizosphere competent 1-aminocyclopropane-1-carboxylic acid deaminase-producing streptomycete Actinobacteria. Plant Soil 308:161–174CrossRefGoogle Scholar
  16. Fiedler H, Krastel P, Muller J, Gebhardt K, Zeeck A (2001) Enterobactin: the characteristic catecholate siderophore of Enterobacteriaceae is produced by Streptomyces species. FEMS Microbiol Lett 196(2):147–151PubMedCrossRefGoogle Scholar
  17. Finnie J, Van Staden J (1985) Effect of seed weed concentrate and applied hormones on in vitro cultured tomato roots. J Plant Physiol 120:215–222CrossRefGoogle Scholar
  18. Ghosh A, Zhao H, Price ND, Kao KC (2011) Genome-scale consequences of cofactor balancing in engineered pentose utilization pathways in Saccharomyces cerevisiae. PLoS One 6(11):e27316PubMedPubMedCentralCrossRefGoogle Scholar
  19. Glick BR (1995) The enhancement of plant growth by free-living bacteria. Can J Microb 41(2):109–117CrossRefGoogle Scholar
  20. Glick BR, Penrose DM, Li J (1998) A model for the lowering of plant ethylene concentrations by plant growth-promoting bacteria. J Theor Biol 190(1):63–68CrossRefGoogle Scholar
  21. Grichko V, Glick B (2001) Amelioration of flooding stress by ACC deaminase containing plant growth-promoting bacteria. Plant Physiol Biochem 39:11–17CrossRefGoogle Scholar
  22. Hamdali H, Hafidi M, Virolle MJ, Ouhdouch Y (2008) Growth promotion and protection against damping-off of wheat by two rock phosphate solubilizing Actinobacteria in a P-deficient soil under greenhouse conditions. Appl Soil Ecol 40:510–517CrossRefGoogle Scholar
  23. Hamedi J, Mohammadipanah F, Pötter G, Spröer C, Schumann P, Göker M et al (2011) Nocardiopsis arvandia sp. nov., isolated from the sandy soil of Iran. Int J Syst Evol Microbiol 61:1189–1194.  https://doi.org/10.1099/ijs.0.022756-0CrossRefPubMedGoogle Scholar
  24. Hamedi J, Imanparast S, Mohammadipanah F (2015) Molecular, chemical and biological screening of soil actinomycete isolates in seeking bioactive peptide metabolites. Iranian J Microbiol 7(1):23–30Google Scholar
  25. Hasegawa D, Yamazaki R, Seuront LL (2004) How islands stir and fertilize the upper ocean. Geophys Res Lett 31.  https://doi.org/10.1029/2004GL020143
  26. Imbert M, Bechet M, Blondeau R (1995) Comparison of the main siderophores produced by some species of Streptomyces. Curr Microbiol 31:129–133CrossRefGoogle Scholar
  27. Jaemsaeng R, Jantasuriyarat C, Thamchaipenet A (2018) Molecular interaction of 1-aminocyclopropane-1-carboxylate deaminase (ACCD)-producing endophytic Streptomyces sp. GMKU 336 towards salt-stress resistance of Oryza sativa L. cv. KDML105. Sci Rep 8. Article number: 1950: 2018Google Scholar
  28. Jain PK, Jain PC (2007) Isolation, characterization and antifungal activity of Streptomyces sampsonii GS 1322. Indian J Exp Biol 45:203–206Google Scholar
  29. Jeffrey LSH (2008) Isolation, characterization and identification of actinomycetes from agriculture soils at Semongok, Sarawak. Afr J Biotechnol 7(20):3697–3702Google Scholar
  30. Jensen JB, Condron MAM, Yaver D, Robison R, Stevens D, Porter H, Hess WM, Teplow DB, Ford EJ, Strobel GA, Albert H, Castillo UF (2002) Munumbicins, wide-spectrum antibiotics produced by Streptomyces NRRL 30562, endophytic on Kennedia nigriscans a. Microbiology 148(9):2675–2685PubMedCrossRefGoogle Scholar
  31. Jog R, Nareshkumar G, Rajkumar S (2016) Enhancing soil health and plant growth promotion by Actinobacteria, pp 33–45CrossRefGoogle Scholar
  32. Kanini GS, Katsifas EA, Savvides AL, Karagouni AD (2013) Streptomyces rochei ACTA1551, an indigenous Greek isolate studied as a potential biocontrol agent against Fusarium oxysporum f.sp. lycopersici. Biomed Res Int 2013:387230.  https://doi.org/10.1155/2013/387230CrossRefPubMedPubMedCentralGoogle Scholar
  33. Karkouri KE, Kowalczewska M, Nicholas A, Said A, Pierre-Edouard F, Didier R (2017) Multi-omics analysis sheds light on the evolution and the intracellular lifestyle strategies of spotted fever group rickettsia spp.  https://doi.org/10.3389/fmicb.2017.01363
  34. Khamna S, Yokota A, Lumyong S (2009) Actinobacteria isolated from medicinal plant rhizospheric soils: diversity and screening of antifungal compounds, indole-3-acetic acid and siderophore production. World J Microbiol Biotechnol 25:649–655CrossRefGoogle Scholar
  35. Kloepper J, Beauchamp C (1992) A review of issues related to measuring of plant roots by bacteria. Can J Microbiol 38:1219–1232CrossRefGoogle Scholar
  36. Kumar PKR, Lonsane BK (1989) Microbial production of gibberellins: state of the art. Adv Applied Microbiol 34:29–139CrossRefGoogle Scholar
  37. Lautru S, Deeth R, Bailey L, Challis G (2005) Discovery of a new peptide natural product by streptomyces coelicolor genome mining. Nat Chem Biol 1(5):265–269.  https://doi.org/10.1038/nchembio731CrossRefPubMedGoogle Scholar
  38. Lechevalier H (1989) Nocardioform actinobacteria. In: Williams ST, Sharpe ME, Holt G (eds) Bergey’s manual of systematic bacteriology, vol 4. Williams and Wilkins, Baltimore University of Georgia, Athens, pp 2348–2361Google Scholar
  39. Lin L, Xu X (2013) Indole-3-acetic acid production by endophytic streptomyces sp. En-1 isolated from medicinal plants. Curr Microbiol 67:209–217PubMedCrossRefGoogle Scholar
  40. Loper JE, Buyer JS (1991) Siderophores in microbial interactions on plant surfaces. Mol Plant-Microbe Interact 4(1):5CrossRefGoogle Scholar
  41. Lorito M, Woo S, Garcia F, Colucci G, Harman G, Pintor-Toro J, Filippone E, Muccifora S, Lawrence C, Zoina A, Tuzun S, Scala F (1998) Genes from mycoparasitic fungi as a novel source for improving plant resistance to fungal pathogens. Proc Natl Acad Sci U S A 95:7860–7865PubMedPubMedCentralCrossRefGoogle Scholar
  42. Manulis S, Shafrir H, Epstein E, Lichter A, Barach I (1994) Biosynthesis of indole-3-acetic acid via indole-3-acetamide pathway in Streptomyces spp. Microbiology 140:1045–1050PubMedCrossRefGoogle Scholar
  43. Mayak S, Tirosh T, Glick BR (2004a) Plant growth-promoting bacteria confer resistance in tomato plants to salt stress. Plant Physiol Biochem 42:565–557PubMedCrossRefGoogle Scholar
  44. Mayak S, Tirosh T, Glick BR (2004b) Plant growth-promoting bacteria that confer resistance to water stress in tomatoes and peppers. Plant Sci 166:525–530CrossRefGoogle Scholar
  45. Marschner H, Römheld V (1994) Strategies of plants for acquisition of iron. Plant Soil 165:261.  https://doi.org/10.1007/BF00008069CrossRefGoogle Scholar
  46. Matsukawa E, Nakagawa Y, Limura Y (2007) Stimulatory effect of indole-3acetic acid on aerial mycelium formation and antibiotic production in Streptomyces spp. Actinomycetol 21:32–39CrossRefGoogle Scholar
  47. Meiwes J, Fiedler HP, Zahner H, Konetschny-Rapp S, Jung G (1990) Production of desferrioxamine E and new analogues by directed fermentation and feeding fermentation. Appl Microbiol Biotechnol 32(5):505–510PubMedCrossRefGoogle Scholar
  48. Muiru WM, Mutitu EW, Mukunya DM (2008) Identification of selected Actinomycete isolates and characterization of their antibiotic metabolites. J Biol Sci 8(6):1021–1026CrossRefGoogle Scholar
  49. Müller G, Matzanke B, Raymond K (1984) Iron transport in Streptomyces pilosus mediated by ferrichrome siderophores, rhodotorulic acid, and enantio-rhodotorulic acid. J Bacteriol 60(1):313–318Google Scholar
  50. Nascimento FX, Rossi MJ, Soares CRFS, McConkey B, Glick BR (2014) New insights into 1-aminocyclopropane-1-carboxylate (ACC) deaminase phylogeny, evolution and ecological significance. PLoS One 9:e99168PubMedPubMedCentralCrossRefGoogle Scholar
  51. Nascimento FX, Rossi MJ, Glick BR (2016) Role of ACC deaminase in stress control of leguminous plants. In: Plant growth promoting actinobacteria. Springer, Singapore, pp 179–192CrossRefGoogle Scholar
  52. Oskay M, Tamer AÜ, Cem A (2004) Antibacterial activity of some Actinomycetes isolated from farming soils of Turkey. Afr J Biotechnol 3:441–446.  https://doi.org/10.5897/AJB2004.000-2087CrossRefGoogle Scholar
  53. Oves-Costales D, Kadi N, Challis GL (2009) The long-overlooked enzymology of a nonribosomal peptide synthetaseindependent pathway for virulence-conferring siderophore biosynthesis. Chem Commun (Camb) 21(43):6530–6541.  https://doi.org/10.1039/b913092fCrossRefGoogle Scholar
  54. Palaniyandi S, Tomei Z, Conrad H, Zhu X (2011) CD23-dependent transcytosis of IgE and immune complex across the polarized human respiratory epithelial cells. J Immunol 186:3484–3496PubMedCrossRefGoogle Scholar
  55. Patten C, Glick B (2002) Role of Pseudomonas putida indoleacetic acid in development of the host plant root system. Appl Environ Microbiol 68(8):3795–3801PubMedPubMedCentralCrossRefGoogle Scholar
  56. Patzer SI, Braun V (2010) Gene cluster involved in the biosynthesis of griseobactin, a catechol-peptide siderophore of Biometals. (2012) 25:285–296, 295, 123 Streptomyces sp. ATCC 700974. J Bacteriol 192(2):426–435.  https://doi.org/10.1128/JB.01250-09CrossRefPubMedGoogle Scholar
  57. Promod K, Dhevendaran K (1987) On phosphobacteria in Cochin backwater. J Mar Biol Assoc India 29:297–305Google Scholar
  58. Rangaswamy V (2012) Improved production of gibberellic acid by Fusarium moniliforme. J Microbiol Res 2(3):51–55CrossRefGoogle Scholar
  59. Rifat H, Safdar A, Ummay A, Rabia K, Iftikhar A (2010) Soil beneficial bacteria and their role in plant growth promotion: a review. Ann Microbiol 60:579–598CrossRefGoogle Scholar
  60. Rios-Iribe E, Flores-Coteres L, Gonzalez-Chavira M, GonzalezAlatorre G, Escamilla-Silva EM (2010) Inductive effect produced by a mixture of carbon source in the production of gibberellic acid by Gibberella fujikuroi. World J Microbiol Biotechnol 11:1–7Google Scholar
  61. Ryu R, Patten C (2008) Aromatic amino acid-dependent expression of indole-3-pyruvate decarboxylase is regulated by tyrR in Enterobacter cloacae UW5. Bacteriology 190:7200–7208CrossRefGoogle Scholar
  62. Saharan B, Nehra V (2011) Plant growth promoting rhizobacteria: a critical review. Life Sci Med Res 21:1–30Google Scholar
  63. Salisbury FB (1994) The role of plant hormones. In: Wilkinson RE (ed) Plant–environment interactions. Marcel Dekker, New York, pp 39–81Google Scholar
  64. Sevilla M, Burris G, Kennedy C (2001) Comparison of benefit to sugarcane plant growth and 15N2 incorporation following inoculation of sterile plants with Acetobacter diazotrophius wild-type and Nif- mutants strains. Mol Plant-Microbe Interact 14:358–366PubMedCrossRefGoogle Scholar
  65. Shenoy V, Kalagudi G (2005) Enhancing plant phosphorus use efficiency for sustainable cropping. Biotechnol Adv 23:501–513PubMedCrossRefGoogle Scholar
  66. Shivlata L, Satyanarayana T (2017) Actinobacteria in agricultural and environmental sustainability. In: Singh J, Seneviratne G (eds) Agro-environmental sustainability. Springer, Cham.  https://doi.org/10.1007/978-3-319-49724-2_9CrossRefGoogle Scholar
  67. Singh R, Shelke G, Kumar A, Jha PN (2015) Biochemistry and genetics of ACC deaminase: a weapon to “stress ethylene” produced in plants. Front Microbiol 6:937PubMedPubMedCentralGoogle Scholar
  68. Srivastava N, Geoffrey H, Alex K, Ilya S, Ruslan S (2014) Dropout: a simple way to prevent neural networks from over fitting. J Mach Learn Res 15:1929–1958Google Scholar
  69. Srividya S, Thapa A, Bhat D, Golmei K, Dey N (2012) Streptomyces sp. 9p as effective biocontrol against chilli soilborne fungal phytopathogens. Eur J Exp Biol 2:163–173Google Scholar
  70. Steger K, Sjögren ÅM, Jarvis Å, Jansson JK, Sundh I (2007) Development of compost maturity and Actinobacteria populations during full-scale composting of organic household waste. J Appl Microbiol 103(2):487–498PubMedCrossRefGoogle Scholar
  71. Stein A, Fortin J, Vallee G (1990) Enhanced rooting of Picea mariana cuttings by ectomycorrhizal fungi. Can J Bot 68:492–498CrossRefGoogle Scholar
  72. Sutthinan K, Akira Y, Saisamorn L (2009) Actinobacteria isolated from medicinal plant rhizosphere soils: diversity and screening of antifungal compounds, indole-3-acetic acid and siderophore production. World J Microbiol Biotechnol 25(4):649–655CrossRefGoogle Scholar
  73. Thangapandian V, Ponmurugan P, Ponmurugan K (2007) Actinobacteria diversity in the rhizosphere soils of different medicinal plants in Kolly Hills-Tamilnadu, India, for secondary metabolite production. Asian J Plant Sci 6:66–70.  https://doi.org/10.3923/ajps.2007CrossRefGoogle Scholar
  74. Tomiya T, Uramoto M, Isono K (1990) Isolation and structure of phosphazomycin C. J Antibiot 43(1):118–121PubMedCrossRefGoogle Scholar
  75. Trejo-Estrada S, Paszczynski A, Crawford D (1998) Antibiotics and enzymes produced by the biocontrol agent Streptomyces violaceusniger YCED-9. J Ind Microbiol Biotech 21:81.  https://doi.org/10.1038/sj.jim.2900549CrossRefGoogle Scholar
  76. Trigo C, Ball AS (1994) Production of extracellular enzymes during the solubilisation of straw by Thermomonospora fusca BD25. Appl Microbiol Biotechnol 41:366–372.  https://doi.org/10.1007/BF00221233CrossRefGoogle Scholar
  77. Ventura M, Canchaya C, Tauch A, Chandra G, Fitzgerald GF, Chater KF, van Sinderen D (2007) Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiol Mol Biol Rev 71:495–548PubMedPubMedCentralCrossRefGoogle Scholar
  78. Verma J, Yadav J, Tiwari K, Lavakush S (2010) Impact of plant growth promoting rhizobacteria on crop production. Int J Agric Res:1816–4897
  79. Vessey J (2003) Plant growth promoting rhizobacteria as biofertilizers. Plant Soil 255:571.  https://doi.org/10.1023/A:1026037216893CrossRefGoogle Scholar
  80. Vurukonda SSKP, Davide G, Emilio S (2018) Plant growth promoting and biocontrol activity of streptomyces spp. as endophytes. Int J Mol Sci 19:952.  https://doi.org/10.3390/ijms19040952CrossRefPubMedCentralPubMedGoogle Scholar
  81. Wang J, Suzuki N, Nishida Y, Kataoka T (1993) Analysis of the function of the 70-kilodalton cyclase-associated protein (CAP) by using mutants of yeast adenylyl cyclase defective in CAP binding. Mol Cell Biol 13(7):4087–4097PubMedPubMedCentralCrossRefGoogle Scholar
  82. Wang C, Yang W, Wang C, Gu C, Niu D, Liu H, Wang Y, Guo J (2012) Induction of drought tolerance in cucumber plants by a consortium of three plant growth-promoting rhizobacterium strains. PLoS One 7:e52565PubMedPubMedCentralCrossRefGoogle Scholar
  83. Whips JM (2001) Microbial interactions and biocontrol in the rhizosphere. J Exp Bot 52:487–511CrossRefGoogle Scholar
  84. Yamanaka K, Oikawa H, Ogawa HO, Hosono K, Shinmachi F, Takano H, Sakuda S, Beppu T, Ueda K (2005) Desferrioxamine E produced by streptomyces griseus stimulates growth and development of Streptomyces tanashiensis. Microbiology 151(9):2899–2905.  https://doi.org/10.1099/mic.0.28139-0CrossRefPubMedGoogle Scholar
  85. Yuan WM, Crawford DL (1995) Characterization of Streptomyces lydicus WYEC108 as a potential biocontrol agent against fungal root and seed rots. Appl Environ Microbiol 61:3119–3128PubMedPubMedCentralGoogle Scholar
  86. Zamanian JL, Lijun X, Foo LC, Nouri N, Zhou L, Giffard RG, Ben Barres A (2012) Genomic analysis of reactive. Astrogliosis J Neurosci 32(18):6391–6410PubMedCrossRefGoogle Scholar

Copyright information

© Springer Nature Singapore Pte Ltd. 2019

Authors and Affiliations

  • Sunita Sakure
    • 1
  • Sarika Bhosale
    • 2
  1. 1.Department of MicrobiologyS.B.B. Alias Appasaheb Jedhe CollegePuneIndia
  2. 2.Department of MicrobiologyYashwantrao Mohite College of Arts, Science and CommercePuneIndia

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