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Small Angle Scattering and Structural Biology: Data Quality and Model Validation

  • Jill TrewhellaEmail author
Chapter
Part of the Advances in Experimental Medicine and Biology book series (AEMB, volume 1105)

Abstract

This chapter provides a brief review of the current state-of-the-art in small-angle scattering (SAS) from biomolecules in solution in regard to: (1) sample preparation and instrumentation, (2) data reduction and analysis, and (3) three-dimensional structural modelling and validation. In this context, areas of ongoing research in regard to the interpretation of SAS data will be discussed with a particular focus on structural modelling using computational methods and data from different experimental techniques, including SAS (hybrid methods). Finally, progress made in establishing community accepted publication guidelines and a standard reporting framework that includes SAS data deposition in a public data bank will be described. Importantly, SAS data with associated meta-data can now be held in a format that supports exchange between data archives and seamless interoperability with the world-wide Protein Data Bank (wwPDB). Biomolecular SAS is thus well positioned to contribute to an envisioned federation of data archives in support of hybrid structural biology.

Keywords

Small-angle scattering SAXS SANS Biomolecular structure Protein structure Modelling Data archive Publication guidelines 

Notes

Acknowledgements

The community building and developing of agreed publication guidelines for biomolecular SAS that are an important focus in this chapter was made possible by the collaborative spirit of colleagues who served with me for the past 12 years on the CSAS of the IUCr, the wwPDB SASvtf, and other colleagues around the world who contributed positively to achieve a consensus set of recommended guidelines. I especially wish to acknowledge: J. Mitchell Guss who with his editor’s hat on, first suggested to me the importance of writing down some guidelines that would be useful for editors and reviewers dealing with manuscripts containing biomolecular SAS data; David Jacques and Dmitri Svergun who joined Mitchell and I to co-author the preliminary publication guidelines; Wayne Hendrickson, Andrej Sali, Torsten Schwede and John Tainer who joined me in establishing the SASvtf to write the first report that expanded on the preliminary guidelines and recommended the establishment of a SAS data archive; Lois Pollack, Dina Schneidman-Duhovny, Masaaki Sugiyama, and Patrice Vachette who subsequently joined the SASvtf to review and update the preliminary guidelines; Anthony P. Duff, Dominique Durand, Frank Gabel, Greg L. Hura, Nigel M. Kirby, Ann H. Kwan, Javier Pérez, Timothy M. Ryan, John Westbrook, Andrew E. Whitten who joined the effort and contributed to our paper “2017 Publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update.”

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© Springer Nature Singapore Pte Ltd. 2018

Authors and Affiliations

  1. 1.School of Life and Environmental SciencesThe University of SydneyNSWAustralia
  2. 2.Department of ChemistryUniversity of UtahSalt Lake CityUSA

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