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Methanogenesis and Methane Emission in Rice / Paddy Fields

  • N. K. Singh
  • D. B. Patel
  • G. D. Khalekar
Chapter
Part of the Sustainable Agriculture Reviews book series (SARV, volume 33)

Abstract

Rice fields are a major source of atmospheric methane (CH4), a greenhouse gas. CH4 emissions from wetland rice fields represents globally 15–20% of the annual anthropogenic CH4 emissions, and about 4% of the global CH4 emissions. Methane emission from rice cultivation may increase from the 1990 level of 97 Tg/year to 145 Tg/year by 2025 due to the increase in acreage and intensification of paddy cultivation. Here we review the role of anaerobic methanogenic bacteria in methane emission. We discuss the factors that influence methane emissions from rice fields, such as water regime, cropping season, soil temperature, fertilizer application, soil physico-chemical properties, crop cultivation, agricultural practices, soil type, soil profile and crop management practices. These practices control soil bacterial communities. Other influencing factors include intercultural operations such as ploughing, puddling and frequent mixing of soil during the paddy field preparation. Methane emission from paddy field follows a seasonal pattern of variation due to influence of climatic factors like temperature, sunlight, and precipitation. Algae, microphytes, macrophytes and anoxygenic photosynthetic bacteria significantly reduce CH4 emissions when they grow actively under illuminated condition. Methane emission is limited by alternate flooding-drying; cultivars with few unproductive tillers, small root system, high oxidative ability, and high harvest index; excessive application of organic amendments; application of potassium, biochar, nitrate, sulfate and ferric iron; and urease and nitrification inhibitors.

Keywords

Archaea Biochar Fertilizers Methanogens Soil properties 

Notes

Acknowledgements

Authors humbly acknowledge the assistance provided by the Vice Chancellor, S.D. Agricultural University (Gujarat, India) for preparation of this manuscript. This article does not attract any conflict of interest among the authors/institutions.

References

  1. Adhya TK, Pattanaik P, Sathpathy SN, Kumaraswamy S, Sethunathan N (1998) Influence of phosphorus application on methane emission and production in flooded paddy soils. Soil Biol Biochem 30:177–181.  https://doi.org/10.1016/S0038-0717(97)00104-1 CrossRefGoogle Scholar
  2. Adhya TK, Bharati K, Mohanty SR, Ramakrishnan B, Rao VR, Sethunathan N, Wassmann R (2000) Methane emission from rice fields at Cuttack, India. Nutr Cycl Agroecosyst 58:95–105.  https://doi.org/10.1023/A:1009886317629 CrossRefGoogle Scholar
  3. Ali MA, Lee CH, Kim PJ (2008) Effect of silicate fertilizer on reducing methane emission during rice cultivation. Biol Fertil Soils 44:597–604.  https://doi.org/10.1007/s00374-007-0243-5 CrossRefGoogle Scholar
  4. Ali MA, Lee CH, Kim SY, Kim PJ (2009) Effect of industrial by-products containing electron acceptors on mitigating methane emission during rice cultivation. Waste Manag 29(10):2759–2764.  https://doi.org/10.1016/j.wasman.2009.05.018 CrossRefGoogle Scholar
  5. Anastasi C, Dowding M, Simpson VJ (1992) Future CH4 emissions from rice production. J Geophys Res 97:7521–7525CrossRefGoogle Scholar
  6. Asakawa S, Kimura M (2008) Comparison of bacterial community structures at main habitats in paddy field ecosystem based on DGGE analysis. Soil Biol Biochem 40:1322–1329.  https://doi.org/10.1016/j.soilbio.2007.09.024 CrossRefGoogle Scholar
  7. Asari N, Ishihara R, Nakajima Y, Kimura M, Asakawa S (2007) Succession and phylogenetic composition of eubacterial communities in rice straw during decomposition on the surface of paddy field soil. Soil Sci Plant Nutr 53(1):56–65.  https://doi.org/10.1111/j.1747-0765.2007.00110.x CrossRefGoogle Scholar
  8. Aulakh MS, Bodenbender J, Wassmann R, Rennenberg H (2000) Methane transport capacity of rice plants. I. Influence of methane concentration and growth stage analyzed with an automated measuring system. Nutr Cycl Agroecosyst 58:357–366.  https://doi.org/10.1023/A:1009831712602 CrossRefGoogle Scholar
  9. Aulakh MS, Wassmann R, Rennenberg H (2001) Methane emissions from rice fields-quantification, mechanisms, role of management, and mitigation options. Adv Agron 70:193–260CrossRefGoogle Scholar
  10. Bharati K, Mohanty SR, Singh DP, Rao VR, Adhya TK (2000) Influence of incorporation or dual cropping of Azolla on methane emission from a flooded alluvial soil planted to rice in eastern India. Agric Ecosyst Environ 79:73–83CrossRefGoogle Scholar
  11. Bloom A, Swisher M (2010) Emissions from rice production. In: Cleveland CJ (ed) Encyclopedia of earth, Washington, DC. http://www.eoearth.org/article/Emissions from RiceProduction?topic=54486. Accessed on 11 July 2012
  12. Bodelier PLE, Roslev P, Henckel T, Frenzel P (2000) Stimulation by ammonium-based fertilizers of methane oxidation in soil around rice roots. Nature 403:421–424.  https://doi.org/10.1038/35000193 CrossRefGoogle Scholar
  13. Bronson KF, Mosier AR (1991) Effect of encapsulated calcium carbide on dinitrogen, nitrous oxide, methane and carbon dioxide emissions from flooded rice. Biol Fertil Soils 11:116–120.  https://doi.org/10.1007/BF00336375 CrossRefGoogle Scholar
  14. Cai ZC, Xing GX, Yan XY, Xu H, Tsuruta H, Yagi K, Minami K (1997) Methane and nitrous oxide emissions from rice paddy fields as affected by nitrogen fertilizers and water management. Plant Soil 196:7–14CrossRefGoogle Scholar
  15. Cai ZC, Tsuruta H, Minami K (2000) Methane emission from rice fields in China: measurements and influencing factors. J Geophys Res 105:17231–17242CrossRefGoogle Scholar
  16. Cai ZC, Tsuruta H, Gao M, Xu H, Wei CF (2003) Options for mitigating methane emission from a permanently flooded rice field. Glob Chang Biol 9:37–45CrossRefGoogle Scholar
  17. Chen J, Xuan J, Du C, Xie J (1997) Effect of potassium nutrition of rice on rhizosphere redox status. Plant Soil 188:131–137CrossRefGoogle Scholar
  18. Chen HZ, Zhu DF, Lin XQ, Zhang YP (2007) Effects of soil permeability on root growth and nitrogen utilization in rice. Chin J Eco-Agric 15:34–37Google Scholar
  19. Chen G, Zheng Z, Yang S, Fang C, Zou X, Zhang J (2010) Improving conversion of Spartina alterniflora into biogas by co-digestion with cow feces. Fuel Process Technol 91:1416–1421CrossRefGoogle Scholar
  20. Chidthaisong A, Conrad R (2000) Specificity of chloroform, 2-bromoethanesulfonate and fluoroacetate to inhibit methanogenesis and other anaerobic processes in anoxic rice field soil. Soil Biol Biochem 32:977–988CrossRefGoogle Scholar
  21. Chin KJ, Conrad R (1995) Intermediary metabolism in methanogenic paddy soil and the influence of temperature. FEMS Microbiol Ecol 18:85–102CrossRefGoogle Scholar
  22. Chin KJ, Lukow T, Conrad R (1999) Effect of Temperature on structure and function of the methanogenic archaeal community in an anoxic rice field, soil. Appl Environ Microbiol 65:2341–2349PubMedCentralPubMedGoogle Scholar
  23. Chin KJ, Lueders T, Friedrich MW, Klose M, Conrad R (2004) Archaeal community structure and pathway of methane formation on rice roots. Microb Ecol 47:59–67CrossRefGoogle Scholar
  24. Cicerone RJ, Shetter JD (1981) Sources of atmospheric methane: measurements in rice paddies and a discussion. J Geophys Res 86:7203–7209CrossRefGoogle Scholar
  25. Clegg CD, Lovell RDL, Hobbus PJ (2003) The impact of grassland management regime on the community structure of selected bacterial groups in soil. FEMS Microbiol Ecol 43:263–270CrossRefGoogle Scholar
  26. Conrad R (1999) Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments (review). FEMS Microbiol Ecol 28:19–202CrossRefGoogle Scholar
  27. Conrad R (2002) Control of microbial methane production in wetland rice fields. Nutr Cycl Agroecosyst 64:59–69.  https://doi.org/10.1023/A:1021178713988 CrossRefGoogle Scholar
  28. Conrad R, Klose M (2005) Effect of potassium phosphate fertilization on production and emission of methane and its 13C-stable isotope composition in rice microcosms. Soil Biol Biochem 37:2099–2108CrossRefGoogle Scholar
  29. Conrad R, Klose M, Claus P (2000) Phosphate inhibits acetotrophic methanogenesis on rice roots. Appl Environ Microbiol 66:828–833PubMedCentralCrossRefPubMedGoogle Scholar
  30. Corton TM, Bajita J, Grospe F, Pamplona R, Wassmann R, Lantin RS (2000) Methane emission from irrigated and intensively managed rice fields in Central Luzon (Philippines). In: Wassmann R, Lantin RS, Neue HU (eds) Methane emissions from major rice ecosystems in Asia, Developments in plant and soil sciences, vol 91. Springer, DordrechtGoogle Scholar
  31. Dannenberg S, Conrad R (1999) Effect of rice plants on methane production and rhizospheric metabolism in paddy soil. Biogeochemistry 45:53–71.  https://doi.org/10.1007/BF00992873 CrossRefGoogle Scholar
  32. Dubey SK (2001) Methane emission and rice agriculture. Curr Sci 81:345–346Google Scholar
  33. FAOSTAT Database (2008) FAO, Rome. 22 September 2008. http://beta.irri.org/solutions/index.php?option=com_content&task=view&id=250
  34. Feng JN, Hsieh YP (1998) Sulfate reduction in freshwater wetland soils and the effects of sulfate and substrate loading. J Environ Qual 27:968–972CrossRefGoogle Scholar
  35. Fey A, Conrad R (2000) Effect of temperature on carbon and electron flow and on the archaeal community in methanogenic rice field soil. Appl Environ Microbiol 66:4790–4797PubMedCentralCrossRefPubMedGoogle Scholar
  36. Fey A, Chin KJ, Conrad R (2001) Thermophilic methanogens in rice field soil. Environ Microbiol 3:295–303CrossRefGoogle Scholar
  37. Fierer N, Jackson RB (2006) The diversity and biogeography of soil bacterial communities. Proc Natl Acad Sci U S A 103:626–631.  https://doi.org/10.1073/pnas.0507535103 CrossRefPubMedCentralPubMedGoogle Scholar
  38. Frenzel P, Bosse U, Janssen PH (1999) Rice roots and methanogenesis in a paddy soil: ferric iron as an alternative electron acceptor in the rooted soil. Soil Biol Biochem 31:421–430CrossRefGoogle Scholar
  39. Furukawa Y, Inubushi K (2002) Feasible suppression technique of methane emission from paddy soil by iron amendment. Nutr Cycl Agroecosyst 64:193–201CrossRefGoogle Scholar
  40. Glissmann K, Conrad R (2000) Fermentation pattern of methanogenic degradation of rice straw in anoxic paddy soil. FEMS Microbiol Ecol 31:117–126CrossRefGoogle Scholar
  41. Hadas O, Pinkas R (1995) Sulfate reduction processes in sediments at different sites in Lake Kinneret, Israel. Microb Ecol 30:55–66CrossRefGoogle Scholar
  42. Harada N, Nishiyama M, Otsuka S, Matsumoto S (2005) Effects of inoculation of phototrophic bacteria on grain yield of rice and nitrogenase activity of paddy soil in a pot experiment. Soil Sci Plant Nutr 51:361–367CrossRefGoogle Scholar
  43. Hattori C, Ueki A, Seto T, Ueki K (2001) Seasonal variations in temperature dependence of methane production in paddy soil. Microbes Environ 16:227–233CrossRefGoogle Scholar
  44. He JZ, Zheng Y, Chen CR, He YQ, Zhang LM (2008) Microbial composition and diversity of an upland red soil under long-term fertilization treatments as revealed by culture-dependent and culture-independent approaches. J Soils Sediments 8:349–358CrossRefGoogle Scholar
  45. Holzapfel-Pschorn A, Conrad R, Seiler W (1986) Effects of vegetation on the emission of methane from submerged paddy soil. Plant Soil 92:223–233CrossRefGoogle Scholar
  46. Hua L, Wu W, Liu Y, McBride MB, Chen Y (2009) Reduction of nitrogen loss and Cu and Zn mobility during sludge composting with bamboo charcoal amendment. Environ Sci Pollut Res 16:1–9CrossRefGoogle Scholar
  47. Inubushi K, Muramatsu Y, Umebayashi M (1992) Influence of percolation on methane emission from flooded paddy soil. Japan J soil Sci Plant Nutr 63:184–189Google Scholar
  48. Inubushi K, Sugii H, Nishono S, Nishino E (2001) Effect of aquatic weeds on methane emission from submerged paddy soil. Am J Bot 88:975–979CrossRefGoogle Scholar
  49. IPCC (1996) XII Summary for policy makers. In: Houghton IT, Meira F, Callander LG, Harris BA, Kattenberg A, Maskell K (eds) Climate change 1995: the scientific basis of climate. Cambridge University Press, Cambridge, p 572Google Scholar
  50. IPCC (2007) Climate change 2007: couplings between changes in the climate system and biogeochemistry. http://www.ipcc.ch/pdf/assessment-report/ar4/wg1/ar4-wg1-chapter7pdf
  51. Islam R, Trivedi P, Madhaiyan M, Seshadri S, Lee G, Yang Y, Kim M, Han G, Singh Chauban P, Sa T (2010) Isolation, enumeration and characterization of diazotrophic bacteria from paddy soil sample under long-term fertilizer management experiment. Biol Fertil Soils 46:261–269CrossRefGoogle Scholar
  52. Jackel U, Schnell S, Conrad R (2001) Effect of moisture, texture and aggregate size of paddy soil on production and consumption of CH4. Soil Biol Biochem 33:965–971CrossRefGoogle Scholar
  53. Jagadeesh Babu Y, Li C, Frolking S, Nayak DR, Adhya TK (2006) Field validation of DNDC model for methane and nitrous oxide emissions from rice-based production systems of India. Nutr Cycl Agroecosyst 74:157–174.  https://doi.org/10.1007/s10705-005-6111-5 CrossRefGoogle Scholar
  54. Jain MC, Kumar S, Wassman R, Mitra S, Singh SD, Sing JP, Singh R, Yadav AK, Gupta S (2000) Methane emissions from irrigated rice fields in northern India (New Delhi). Nutr Cycl Agroecosyst 58:75–83CrossRefGoogle Scholar
  55. Jia ZJ, Cai ZC, Xu H, Tsuruta H (2002) Effects of rice cultivars on methane fluxes in a paddy soil. Nutr Cycl Agroecosyst 64:87–94CrossRefGoogle Scholar
  56. Jiang CS, Wang YS, Zheng XH, Zhu B, Huang Y, Hao QJ (2006) Methane and nitrous oxide emissions from three paddy rice based cultivation systems in Southwest China. Adv Atmos Sci 23:415–424CrossRefGoogle Scholar
  57. Kang GD, Cai ZC, Feng XZ (2002) Importance of water regime during the non-rice growing period in winter in regional variation of CH4 emissions from rice fields during following rice growing period in China. Nutr Cycl Agroecosyst 64:95–100CrossRefGoogle Scholar
  58. Keerthisinghe DG, Freney JR, Mosier AR (1993) Effect of wax-coated calcium carbide and nitrapyrin on nitrogen loss and methane emission from dry-seeded flooded rice. Biol Fertil Soils 16:71–75CrossRefGoogle Scholar
  59. Keppler F, Hamilton JT, Brass M, Röckmann T (2006) Methane emissions from terrestrial plants under aerobic conditions. Nature 439:187–191CrossRefGoogle Scholar
  60. Khalil MAK, Rasmussen RA (1991) Methane emission from the rice field in China. Environ Sci Technol 25:979–981CrossRefGoogle Scholar
  61. Kimura M (2000) Anaerobic microbiology in waterlogged rice fields. In: Bollag JM, Stotzky G (eds) Soil biochemistry. Marcel Dekker, New York, pp 35–138Google Scholar
  62. Kimura M, Murase J, Lu YH (2004) Carbon cycling in rice field ecosystems in the context of input, decomposition and translocation of organic materials and the fates of their end products (CO2 and CH4). Soil Biol Biochem 36:1399–1416CrossRefGoogle Scholar
  63. Kirk GJD, Bajita JB (1995) Root induced iron oxidation, pH change and zinc solubilization in the rhizosphere of low land rice. New Phytol 131:129–137CrossRefGoogle Scholar
  64. Kluber HD, Conrad R (1998) Effects of nitrate, nitrite, NO and N2O on methanogenesis and other redox processes in anoxic rice field soil. FEMS Microbiol Ecol 25:301–318CrossRefGoogle Scholar
  65. Kludze HK, DeLaune RD, Patrick WH Jr (1993) Aerenchyma formation and methane and oxygen exchange in rice. Soil Sci Soc Am J 57:386–391CrossRefGoogle Scholar
  66. Kristjansson JK, Scheonheit P, Thauer RK (1982) Different Ks values for hydrogen and methanogenic and sulphate reducing bacteria: an explanation for the apparent inhibition of methanogenesis by sulphate. Arch Microbiol 131:278–282CrossRefGoogle Scholar
  67. Kruger M, Frenzel P (2003) Effects of N-fertilisation on CH4 oxidation and production, and consequences for CH4 emissions from microcosms and rice fields. Glob Chang Biol 9:773–784CrossRefGoogle Scholar
  68. Kruger M, Frenzel P, Kemnitz D, Conrad R (2005) Activity, structure and dynamics of the methanogenic archaeal community in a flooded Italian rice field. FEMS Microbiol Ecol 51:323–331CrossRefGoogle Scholar
  69. Lee CH, Park KD, Jung KY, Ali MA, Lee D, Gutierrez J, Kim PJ (2010) Effect of Chinese milk vetch (Astragalus sinicus L.) as a green manure on rice productivity and methane emission in paddy soil. Agric Ecosyst Environ 138:343–347CrossRefGoogle Scholar
  70. Lee SY, Lee SH, Jang JK, Cho KS (2011) Comparison of methanotrophic community and methane oxidation between rhizospheric and non-rhizospheric soils. Geomicrobiol J 28(8):676–685.  https://doi.org/10.1080/01490451.2010.511984 CrossRefGoogle Scholar
  71. Li D, Liu M, Cheng Y, Wang D, Qin J, Jiao J, Li H, Hu F (2011) Methane emissions from double-rice cropping system under conventional and no tillage in southeast China. Soil Tillage Res 113(2):77–81CrossRefGoogle Scholar
  72. Liesack W, Schnell S, Revsbech NP (2000) Microbiology of flooded rice paddies. FEMS Microbiol Rev 24:625–645CrossRefGoogle Scholar
  73. Liu CW, Wu CY (2004) Evaluation of methane emissions from Taiwanese paddies. Sci Total Environ 333:195–207CrossRefGoogle Scholar
  74. Liu DY, Ding WX, Jia ZJ, Cai ZC (2011) Relation between methanogenic archaea and methane production potential in selected natural wetland ecosystems across China. Biogeosciences 8:329–338.  https://doi.org/10.5194/bg-8-329-2011 CrossRefGoogle Scholar
  75. Lovley DR, Phillips EJP (1987) Rapid assay for microbially reducible ferric iron in aquatic sediments. Appl Environ Microbiol 53:1536–1540PubMedCentralPubMedGoogle Scholar
  76. Lu W, Liao Z, Zhang J, Cen C (1999) Effects of differnet rice-vegetable rotation systems on CH4 emission from paddy soils. Agro Environ Prot 18(5):200–202Google Scholar
  77. Lu WF, Chen W, Duan BW, Guo WM, Lu Y, Lantin RS, Wassmann R, Neue HU (2000) Methane emissions and mitigation options in irrigated rice fields in southeast China. Nutr Cycl Agroecosyst 58:65–73CrossRefGoogle Scholar
  78. Major J, Steiner C, Di Tommaso A, Falcao NPS, Lenmann J (2005) Weed composition and cover after three years of soil fertility management in the central Brazilian Amazon: compost, fertilizer, manure and charcoal applications. Weed Biol Manage 5:69–76CrossRefGoogle Scholar
  79. Masscheleyn PH, DeLaune RD, Pattrick WH Jr (1993) Methane and nitrous oxide emissions from laboratory measurements of rice soil suspensions: effect of soil oxidation reduction status. Chemosphere 26:251–260CrossRefGoogle Scholar
  80. Matthews RB, Wassmann R, Knox JK, Buendia LV (2000) Using a crop/soil simulation model and GIS techniques to assess methane emissions from rice fields in Asia. IV. Upscaling to national levels. Nutr Cycl Agroecosyst 58:201–217CrossRefGoogle Scholar
  81. Mingxing W, Jing L (2002) CH4 emission and oxidation in Chinese rice paddies. Nutrt Cycl Agroecosyst 64:43–55CrossRefGoogle Scholar
  82. Nakayama N, Okabe A, Toyota K, Kimura M, Asakawa S (2006) Phylogenetic distribution of bacteria isolated from the flood water of a Japanese paddy field. Soil Sci Plant Nutr 52(3):305–312CrossRefGoogle Scholar
  83. Naser HM, Nagata O, Tamura S, Hatano R (2007) Methane emissions from five paddy fields with different amounts of rice straw application in central Hokkaido, Japan. Soil Sci Plant Nutr 53:95–101CrossRefGoogle Scholar
  84. Neue HU, Roger PA (2000) Rice agriculture: factors controlling emissions. In: Khalil MAK (ed) Atmospheric methane. Its role in the global environment. Springer, Berlin, pp 134–169Google Scholar
  85. Neue HU, Scharpenseel HW (1984) Gaseous products of the decomposition of organic matter in submerged soils. In: Organic matter and rice. International Rice Research Institute, Manila, pp 311–328Google Scholar
  86. Neue HU, Latin RS, Wassmann R, Aduna JB, Alberto CR, Andales MJF (1992) Methane emission from rice soils of the Philippines. In: Minami K, Mosier A, Sass R (eds) CH4 and N2O global emissions and controls from rice fields and other agriculture and industrial sources, NIAES series 2. National Institute of Agro-Environmental Sciences, Tsukuba, pp 55–64Google Scholar
  87. Nirmal Kumar JI, Viyol SV (2009) Short-term diurnal and temporal measurement of methane emission in relation to organic carbon, phosphate and sulphate content of two rice fields of central Gujarat, India. Paddy Water Environ 7:11–16.  https://doi.org/10.1007/s10333-008-0147-5 CrossRefGoogle Scholar
  88. Noll M, Matthies D, Frenzel P, Frenzel M, Liesack W (2005) Succession of bacterial community structure and diversity in a paddy soil oxygen gradient. Environ Microbiol 7:382–395CrossRefGoogle Scholar
  89. Okabe A, Toyota K, Kimura M (2000) Seasonal variations of phospholipid fatty acid composition in the flood water of a Japanese paddy field under a long-term fertilizer trial. Soil Sci Plant Nutr 46(1):177–188CrossRefGoogle Scholar
  90. Oude Elferink SJWH, Visser A, Hulshoff Pol LW, Stams AJM (1994) Sulphate reduction in methanogenic bioreactors. FEMS Microbiol Rev 15:119–136Google Scholar
  91. Patrick WH Jr (1981) The role of inorganic redox systems in controlling reduction in paddy soils. In: Proceedings of symposium on paddy soil. Institute of Soil Science, Academia Sinica/Springer, Beijing/Berlin, pp 107–117CrossRefGoogle Scholar
  92. Prinn RG (1995) Global atmospheric-biospheric chemistry. In: Prinn RG (ed) Global atmospheric-bioshperic chemistry. Plenum, New York, pp 1–18Google Scholar
  93. Qin Z, Zhang JE, Luo SM, Xu HQ, Zhang J (2010) Estimation of ecological services value for the rice-duck farming system. Resour Sci 32(5):864–872Google Scholar
  94. Qiu QF, Noll M, Abraham WR, Lu YH, Conrad R (2008) Applying stable isotope probing of phospholipid fatty acids and rRNA in a Chinese rice field to study activity and composition of the methanotrophic bacterial communities in situ. ISME J 2:602–614CrossRefGoogle Scholar
  95. Ramakrishnan B, Lueders T, Dunfield PF, Conrad R, Friedrich MW (2001) Archaeal community structures in rice soils from different geographical regions before and after initiation of methane production. FEMS Microbiol Ecol 37:175–186CrossRefGoogle Scholar
  96. Ratering S, Schnell S (2000) Localization of iron-reducing activity in paddy soil by profile studies. Bioegeochemistry 48:341–365CrossRefGoogle Scholar
  97. Renner R (2007) Rethinking biochar. Environ Sci Technol 41:5932–5933CrossRefGoogle Scholar
  98. Rondon M, Ramirez JA, Lehmann J (2005) Charcoal additions reduce net emissions of greenhouse gases to the atmosphere. In: Proceedings of the 3rd USDA symposium on greenhouse gases and carbon sequestration, Baltimore, USA, March 21–24, p 208Google Scholar
  99. Rondon MA, Molina D, Hurtado M, Ramirez J, Lehmann J, Major J, Amezquita E (2006) Enhancing the productivity of crops and grasses while reducing greenhouse gas emissions through bio-char amendments to unfertile tropical soils. In: 18th world congress of soil science, July 9–15, Philadelphia, PA, http://crops.confex.com/crops/wc2006/techprogram/P16849.HTM. Accessed on Dec 2012
  100. Rui J, Peng J, Lu Y (2009) Succession of Bacterial Populations during Plant Residue Decomposition in Rice Field Soil. Appl Environ Microbiol 75(14):4879–4886.  https://doi.org/10.1128/AEM.00702-09 CrossRefPubMedCentralPubMedGoogle Scholar
  101. Saenjan P, Wada H 1990 Effects of salts on methane formation and sulfate reduction in submerged soil. In: Transactions of the 14th international congress of soil science vol 2, Commission 2, 12–18 August, Kyoto, Japan, pp 244–248Google Scholar
  102. Sass RL, Fisher FM (1992) CH4 emission from paddy fields in the United States gulf coast area. In: Minami K, Mosier A, Sass R (eds) CH4 and N2O global emissions and controls from rice fields and other agriculture and industrial sources, NIAES series 2. National Institute of Agro-Environmental Sciences, Tsukuba, pp 65–78Google Scholar
  103. Sass RL, Fisher FM Jr (1994) CH4 emission from paddy fields in the United States gulf coast area. In: Minami CK, Mosier A, Sass RL (eds) CH4 and N2O: global emissions and controls from rice fields and other agricultural and industrial sources, NIAES series 2. National Institute of Agro-Environmental Sciences, Tsukuba, pp 65–77Google Scholar
  104. Sass RL, Fisher FM, Harcombe PA, Turner FT (1990) Methane production and emission in Texas rice fields. Glob Biogeochem Cycles 4:47–68CrossRefGoogle Scholar
  105. Satpathy SN, Mishra S, Adhya TK, Ramakrishnan B, Rao VR, Sethunathan N (1998) Cultivar variation in methane efflux from tropical rice. Plant Soil 202:223–229CrossRefGoogle Scholar
  106. Schimel J (2000) Global change: rice, microbes and methane. Nature 403:375–377.  https://doi.org/10.1038/35000325 CrossRefGoogle Scholar
  107. Schutz H, Holzapfel-Pschorn A, Conrad R, Rennenberg H, Seiler W (1989) A 3-year continuous record on the influence of daytime, season, and fertilizer treatment on methane emission rates from an Italian rice paddy. J Geophys Res 94:16405–16416.  https://doi.org/10.1029/JD094iD13p16405 CrossRefGoogle Scholar
  108. Sebacher DI, Harriss RC, Bartlett KB, Sebacher SM, Grice SS (1986) Atmospheric methane sources: alaskan tundra bogs, an alpine fen, and a subarctic boreal marsh. Tellus 38B:1–10CrossRefGoogle Scholar
  109. Singh NK, Dhar DW (2006) Sewage effluent: a potential nutrient source for microalgae. Proc Indian Natl Sci Acad 72:113–120Google Scholar
  110. Singh NK, Dhar DW (2007) Nitrogen and phosphorous scavenging potential in microalgae. Indian J Biotechnol 6:52–56Google Scholar
  111. Singh NK, Dhar DW (2011) Phylogenetic relatedness among Spirulina and related cyanobacterial genera. World J Microbiol Biotechnol 27:941–951.  https://doi.org/10.1007/s11274-010-0537-x CrossRefGoogle Scholar
  112. Singh NK, Patel DB (2012) Microalgal remediation of distillery effluent: a review. In: Lichtfouse E (ed) Farming for food and water security, Sustainable agriculture reviews, vol 10. Springer, Dordrecht, pp 83–109.  https://doi.org/10.1007/978-94-007-4500-1 CrossRefGoogle Scholar
  113. Singh NK, Dhar DW, Tabassum R (2016a) Role of cyanobacteria in crop protection. Proc Natl Acad Sci India Sect B Biol Sci 86(1):1–8.  https://doi.org/10.1007/s40011-014-0445-1 ISSN 0369-8211CrossRefGoogle Scholar
  114. Singh NK, Desai CK, Rathore BS, Chaudhari BG (2016b) Bio-efficacy of herbicides on performance of mustard, Brassica juncea (L.) and population dynamics of agriculturally important bacteria. Proc Natl Acad Sci India Sect B Biol Sci 86(3):743–748.  https://doi.org/10.1007/s40011-015-0521-1 ISSN 0369-8211CrossRefGoogle Scholar
  115. Steiner C, Teixeira WG, Lehmann J, Nehls T, de Macedo JLV, Blum WEH, Zech W (2007) Long term effects of manure, charcoal and mineral fertilization on crop production and fertility on a highly weathered Central Amazonian upland soil. Plant Soil 291:275–290CrossRefGoogle Scholar
  116. Sugano A, Tsuchimoto H, Cho TC, Kimura M, Asakawa S (2005) Succession of methanogenic archaea in rice straw incorporated into a Japanese rice field: estimation by PCR-DGGE and sequence analyses. Archaea 1:391–397PubMedCentralCrossRefPubMedGoogle Scholar
  117. Takahashi E, Ma JF, Miyake Y (1990) The possibility of silicon as an essential element for higher plants. Comments Agric Food Chem 2:99–122Google Scholar
  118. Takahashi S, Uenosono S, Ono S (2003) Short- and long-term effects office straw application on nitrogen uptake by crops and nitrogen mineralization under flooded and upland conditions. Plant Soil 251:291–301.  https://doi.org/10.1023/A:1023006304935 CrossRefGoogle Scholar
  119. Takai Y, Kamura T (1966) The mechanism of reduction in waterlogged paddy soil. Folia Microbiol 11:304–313CrossRefGoogle Scholar
  120. Tanaka H, Kyaw K, Toyota K, Motobayashi T (2010) Influence of application of rice straw, farmyard manure, and municipal biowastes on nitrogen fixation, soil microbial biomass N, and mineral N in a model paddy microcosm. Biol Fertil Soils 42:501–505CrossRefGoogle Scholar
  121. Towprayoon S, Smakgahn K, Poonkqew S (2005) Mitigation of methane and nitrous oxide emissions from drained irrigated rice fields. Chemosphere 59:1547–1556CrossRefGoogle Scholar
  122. van der Gon HAD, van Bodegom PM, Wassmann R, Lantin RS, Metra-Corton T (2001) Assessing sulfate-containing soil amendments to reduce methane emissions from rice fields: mechanisms, effectiveness and costs. Mitig Adapt Strateg Glob Chang 6:69–87.  https://doi.org/10.1023/A:1011380916490 CrossRefGoogle Scholar
  123. van der Gon HAD, Kropff MJ, van Breemen N, Wassmann R, Lantin RS, Aduna E, Corton TM (2002) Optimizing grain yields reduces CH4 emissions from rice paddy fields. Proc Natl Acad Sci U S A 99:12021–12024.  https://doi.org/10.1073/pnas.192276599 CrossRefGoogle Scholar
  124. Wang MX (2001) Methane emission from chinese rice fields. Science Press, Beijing, p 223Google Scholar
  125. Wang B, Adachi K (2000) Differences among rice cultivars in root exudation, methane oxidation, and populations of methanogenic and methanotrophic bacteria in relation to methane emission. Nutr Cycl Agroecosyst 58:349–356CrossRefGoogle Scholar
  126. Wang ZP, Delaune RD, Patrick WH Jr, Masscheleyn PH (1993) Soil redox and pH effects on methane production in a flooded rice soils. Soil Sci Soc Am J 57:382–385CrossRefGoogle Scholar
  127. Wang B, Neue HU, Samonte HP (1997) Effect of cultivar difference (‘IR72’, ‘IR65598’, and ‘Dular’) on methane emission. Agric Ecosyst Environ 62:31–40CrossRefGoogle Scholar
  128. Wang ZY, Xu YC, Li Z, Guo YX, Wassmann R, Neue HU, Lantin RS, Buendia LV, Ding YP, Wang ZZ (2000) A four-year record of methane emissions from irrigated rice fields in the Beijing region of China. Nutr Cycl Agroecosyst 58:55–63CrossRefGoogle Scholar
  129. Wang H, Lin K, Hou Z, Richardson B, Gan J (2010) Sorption of the herbicide terbuthylazine in two New Zealand forest soils amended with biosolids and biochars. J Soils Sediments 10:283–289CrossRefGoogle Scholar
  130. Watanabe T, Kimura M, Asakawa S (2006) Community structure of methanogenic archaea in paddy field soil under double cropping (rice-wheat). Soil Biol Biochem 38:1264–1274CrossRefGoogle Scholar
  131. Watanabe T, Kimura M, Asakawa S (2007) Dynamics of methanogenic archaeal communities based on rRNA analysis and their relation to methanogenic activity in Japanese paddy field soils. Soil Biol Biochem 39:2877–2887CrossRefGoogle Scholar
  132. Watanabe T, Hosen Y, Agbisit R, Llorca L, Fujita D, Asakawa S Kimura M (2010) Changes in community structure and transcriptional activity of methanogenic archaea in a paddy field soil brought about by a water-saving practice – Estimation by PCR-DGGE and qPCR of 16S rDNA and 16S rRNA. In: 19th World Congress Of Soil Science, Soil Solutions For A Changing World, 1–6 August 2010, Brisbane, AustraliaGoogle Scholar
  133. Weber S, Lueders T, Friedrich MW, Conrad R (2001) Methanogenic populations involved in the degradation of rice straw in anoxic paddy soil. FEMS Microbiol Ecol 38:11–20CrossRefGoogle Scholar
  134. Win KT, Nonaka R, Toyota K, Motobayashi T, Hosomi M (2010) Effects of option mitigating ammonia volatilization on CH4 and N2O emissions from a paddy field fertilized with anaerobically digested cattle slurry. Biol Fertil Soils 46:589–595.  https://doi.org/10.1007/s00374-010-0465-9 CrossRefGoogle Scholar
  135. Wu XL, Chin KJ, Stubner S, Conrad R (2001) Functional patterns and temperature response of cellulose-fermenting microbial cultures containing different methanogenic communities. Appl Microbiol Biotechnol 56:212–219CrossRefGoogle Scholar
  136. Wu L, Ma K, Li Q, Ke X, Lu Y (2009) Composition of archaeal community in a paddy field as affected by rice cultivar and N fertilizer. Microbial Ecol 58:819–826CrossRefGoogle Scholar
  137. Wu M, Qin H, Chen Z, Wu J, Wei W (2011) Effect of long-term fertilization on bacterial composition in rice paddy soil. Biol Fertil Soils 47:397–405.  https://doi.org/10.1007/s00374-010-0535-z CrossRefGoogle Scholar
  138. Xie B, Zheng X, Zhou Z, Gu J, Zhu B, Chen X, Shi Y, Wang Y, Zhao Z, Liu C, Yao Z, Zhu J (2010) Effects of nitrogen fertilizer on CH4 emission from rice fields: multi-site field observations. Plant Soil 326:393–401.  https://doi.org/10.1007/s11104-009-0020-3 CrossRefGoogle Scholar
  139. Xiong ZQ, Xing GX, Zhu ZL (2007) Nitrous oxide and methane emissions as affected by water, soil and nitrogen. Pedosphere 17:146–155CrossRefGoogle Scholar
  140. Xu Q (2001) Evolution of soil fertility in relation to soil quality in paddy fields of the Tai Lake area, Yangtze Basin. Res Environ 10(4):323–328Google Scholar
  141. Xu H, Cai ZC, Li XP, Tsuruta H (2000) Effect of antecedent soil water regime and rice straw application time on CH4 emission from rice cultivation. Aust J Soil Res 38:1–12CrossRefGoogle Scholar
  142. Xu H, Cai ZC, Jia ZJ (2002) Effect of soil water contents in the non-rice growth season on CH4 emission during the following rice-growing period. Nutr Cycl Agroecosyst 64:101–110CrossRefGoogle Scholar
  143. Xu H, Cai ZC, Tsuruta H (2003) Soil moisture between rice growing season affects methane emission, production, and oxidation. Soil Sci Soc Am J 67:1147–1157CrossRefGoogle Scholar
  144. Yagi K, Minami K (1990) Effect of organic matter application on methane emission from some Japanese paddy fields. Soil Sci Plant Nutr 36:599–610CrossRefGoogle Scholar
  145. Yamane I, Sato K (1964) Decomposition of glucose and gas formation in flooded soils. Soil Sci Plant Nutr 10:127–133CrossRefGoogle Scholar
  146. Yan XY, Akiyama H, Yagi K, Akimoto H (2009) Global estimations of the inventory and mitigation potential of methane emissions from rice cultivation conducted using the 2006 intergovernmental panel on climate change guidelines. Global Biogeochem Cycles 23:1–15CrossRefGoogle Scholar
  147. Yanai Y, Toyota K, Okazaki M (2007) Effects of charcoal addition on N2O emissions from soil resulting from rewetting air-dried soil in short-term laboratory experiments. Soil Sci Plant Nutr 53:181–188CrossRefGoogle Scholar
  148. Yang SS, Chang HL (1998) Effect of environmental conditions on methane production and emission from paddy soil. Agric Ecosyst Environ 69:69–80CrossRefGoogle Scholar
  149. Yang SS, Chang HL (1999) Diurnal variation of methane emission from paddy fields at different growth stages of rice cultivation in Taiwan. Agric Ecosyst Environ 76:75–84CrossRefGoogle Scholar
  150. Yao H, Conrad R, Wassmann R, Neue HU (1999) Effect of soil characteristics on sequential reduction and methane production in sixteen rice paddy soils from China, the Philippines, and Italy. Biogeochemistry 47:269–295CrossRefGoogle Scholar
  151. Yue J, Shi Y, Liang W, Wu J, Wang C, Huang G (2005) Methane and nitrous oxide emissions from rice field and related microorganism in black soil, northeastern China. Nutr Cycl Agroecosyst 73:293–301.  https://doi.org/10.1007/s10705-005-3815-5 CrossRefGoogle Scholar
  152. Zhang A, Cui L, Pan G, Li L, Hussain Q, Zhang X, Zheng J, Crowley D (2010a) Effect of biochar amendment on yield and methane and nitrous oxide emissions from a rice paddy from Tai Lake plain. China Agric Ecosyst Environ 139:469–475.  https://doi.org/10.1016/j.agee.2010.09.003 CrossRefGoogle Scholar
  153. Zhang H, Lin K, Wang H, Gan J (2010b) Effect of Pinus radiate derived biochars on soil sorption and desorption of phenanthrene. Environ Pollut 158:2821–2825CrossRefGoogle Scholar
  154. Zhang G, Zhang X, Ma J, Xu H, Cai Z (2011) Effect of drainage in the fallow season on reduction of CH4 production and emission from permanently flooded rice fields. Nutr Cycl Agroecosyst 89:81–91.  https://doi.org/10.1007/s10705-010-9378-0 CrossRefGoogle Scholar
  155. Zheng Y, Zhang LM, Zheng YM, Di HJ, He JZ (2008) Abundance and community composition of methanotrophs in a Chinese paddy soil under long-term fertilization practices. J Soils Sediments 8:406–414CrossRefGoogle Scholar
  156. Zou JW, Huang Y, Jiang JY, Zheng XH, Sass RL (2005) A 3-year field measurement of methane and nitrous oxide emissions from rice paddies in China: effects of water regime, crop residue, and fertilizer application. Global Biogeochem Cycles 19:GB2021.  https://doi.org/10.1029/2004GB002401 CrossRefGoogle Scholar
  157. Zou JW, Huang Y, Zheng XH, Wang Y (2007) Quantifying direct N2O emissions in paddy fields during rice growing season in mainland China: dependence on water regime. Atmos Environ 41:8032–8042CrossRefGoogle Scholar
  158. Zwieten VL, Singh B, Joseph S, Kimber S, Cowie A, Chan YK (2009) Biochar and emissions of non-CO2 greenhouse gases from soil. In: Lehmann J, Joseph S (eds) Biochar for environmental management science and technology. Earthscan Press, London, pp 227–224Google Scholar

Copyright information

© Springer Nature Switzerland AG 2018

Authors and Affiliations

  • N. K. Singh
    • 1
  • D. B. Patel
    • 1
  • G. D. Khalekar
    • 2
  1. 1.Department of MicrobiologyC.P. College of Agriculture, S.D. Agricultural UniversitySardarkrushinagarIndia
  2. 2.Department of Plant Molecular Biology & BiotechnologyC.P. College of Agriculture, S.D. Agricultural UniversitySardarkrushinagarIndia

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