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DNA Barcoding of Rays from the South China Sea

  • B. Akbar John
  • M. A. Muhamad Asrul
  • Wahidah Mohd Arshaad
  • K. C. A. Jalal
  • Hassan I. Sheikh
Chapter

Abstract

Fishery management on elasmobranch is gaining attention in recent years due to their economic value and key ecological role played by them in their natural habitat. Many species of elasmobranch especially rays exhibit overlapping morphological similarities and hence difficult to identify to their species level. As an accurate identification is the key for developing framework for fishery management, we used molecular approach to identify ray fishes sampled from South China Sea. We used cytochrome oxidase subunit I (COI) sequencing (∼652 bp) to cross-examine field identification of ray fishes. A total of ten species that belong to three families were successfully sequenced/identified from 29 PCR products. BLAST/BOLD analyses were performed, and inter- and intraspecies genetic distances were calculated. Due to overlapping morphological characters and morphocryptic nature, their accurate field identification is challenging. We also addressed problems in species-level delimitation of ray fishes due to the paucity of information in DNA databanks besides unresolved taxonomic status of available data set. We further addressed management and action plan for sustainable management of elasmobranch fishery in Malaysia.

Keywords

DNA barcoding COI gene Ray fish Batoids 

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Copyright information

© Springer International Publishing AG, part of Springer Nature 2018

Authors and Affiliations

  • B. Akbar John
    • 1
  • M. A. Muhamad Asrul
    • 2
  • Wahidah Mohd Arshaad
    • 4
  • K. C. A. Jalal
    • 2
  • Hassan I. Sheikh
    • 3
  1. 1.INOCEM Research Station (IRS)Kulliyyah of Science, International Islamic University Malaysia (IIUM)KuantanMalaysia
  2. 2.Department of Marine ScienceKulliyyah of Science, International Islamic University Malaysia (IIUM)KuantanMalaysia
  3. 3.Department of BiotechnologyKulliyyah of Science, International Islamic University Malaysia (IIUM)KuantanMalaysia
  4. 4.Department of FisheriesSEFDECTerengganuMalaysia

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