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The Enigma of CRB1 and CRB1 Retinopathies

  • Thomas A. Ray
  • Kelly J. Cochran
  • Jeremy N. KayEmail author
Conference paper
  • 1.1k Downloads
Part of the Advances in Experimental Medicine and Biology book series (AEMB, volume 1185)

Abstract

Mutations in the gene Crumbs homolog 1 (CRB1) are responsible for several retinopathies that are diverse in severity and phenotype. Thus, there is considerable incentive to determine how disruption of this gene causes disease. Progress on this front will aid in developing molecular diagnostics that can predict disease severity with the ultimate goal of developing therapies for CRB1 retinopathies via gene replacement. The purpose of this review is to summarize what is known regarding CRB1 and highlights information outstanding. Doing so will provide a framework toward a thorough understanding of CRB1 at the molecular and protein level with the ultimate goal of deciphering how it contributes to the disease.

Keywords

Crb1 Leber congenital amaurosis Rd8 Retinitis pigmentosa Photoreceptor Crumbs Muller glia 

41.1 Mutations in CRB1 Cause a Spectrum of Retinopathies

Retinopathies attributed to the loss of function of the gene CRB1 are diverse in both age of onset and retinal pathology. Roughly 200 disease-causing mutations in CRB1 account for various retinopathies having an autosomal recessive inheritance pattern (Talib et al. 2017). The most aggressive of these retinopathies is Leber congenital amaurosis (LCA), which is hallmarked by blindness at birth or early infancy accompanied by severe perturbations of retinal cell layering (Jacobson et al. 2003; Aleman et al. 2011). Mutations in CRB1 are the second leading cause for LCA and account for ~10–13% of cases or 10,000 people worldwide (den Hollander et al. 2008; Bujakowska et al. 2012; Alves et al. 2014). Mutations in CRB1 also cause early- and adult-onset retinitis pigmentosa (RP), accounting for ~3% of cases or 70,000 patients worldwide (Bujakowska et al. 2012; Alves et al. 2014). Other retinopathies attributed to CRB1 include RP with preserved para-arteriole retinal pigment epithelium (PPRPE) (den Hollander et al. 1999), RP with Coats-like exudative vasculopathy (den Hollander et al. 2001b; den Hollander et al. 2004), and familial foveal retinoschisis (Vincent et al. 2016). Given the multitude of diseases and phenotypes caused by CRB1 mutations, it is likely we will link more retinopathies to CRB1 as genetic testing becomes more common in the clinic.

41.2 CRB1 Has Multiple Isoforms and Is Expressed in the Photoreceptors

The mammalian CRB1 gene was first cloned from the human retina and brain cDNA libraries (den Hollander et al. 1999). The original transcript described contained 11 exons, but a later transcript was discovered containing 12 exons encoding a type 1 transmembrane protein with high homology to drosophila Crumbs (den Hollander et al. 2001a). The 12 exon version of the gene encodes a protein consisting of a large extracellular domain and relatively short cytosolic domain. The ectodomain consists of 17 EGF repeats intermixed with 3 laminin G domains (Fig. 41.1a). The intracellular portion of the gene (exon 12) encodes FERM and PDZ binding domains (Kantardzhieva et al. 2005). The exonic structure of the gene provides a modular framework as each exon encodes one or several individual protein domains (Fig. 41.1a). This structure allows potential variations in exon usage to generate proteins with different domain compositions. For both EGF and laminin G, it has been shown that individual domains can confer ligand specificity (Tisi et al. 2000; Sun et al. 2015). This sets up the possibility that different CRB1 isoforms may have different binding partners, paving the way for multiple functions. This idea is not pure conjecture, as both mice and human have several isoforms annotated (Fig. 41.1b, c) and even more have been described (Quinn et al. 2017). In these isoforms, not only does the extracellular domain vary but cytosolic portions of the protein can be completely different or lacking entirely. It is yet to be determined the functional significance of these isoforms or where they are expressed.
Fig. 41.1

Protein and gene structure of CRB1. (a) Representation of the canonical mammalian CRB1 protein consisting of 17 EGF domains, 3 Laminin G domains, an N-terminal signal peptide, and a transmembrane domain corresponding to mouse (UniProt Q8VHS2) and human (UniProt P82279) proteins (http://smart.embl.de, (Letunic and Bork 2018)). Dashed lines correspond to exon demarcation. (b, c) Isoform annotations for mouse (b) and human (c) CRB1 (UCSC Known Genes)

Gene expression analysis from whole retina RNAseq (Hoshino et al. 2017) reveals that Crb1 expression begins in the developing retina, presumably by retinal progenitors, and increases until it peaks in the adult retina (Fig. 41.2a). Whether Crb1 is expressed in only Muller glia or both Muller glia and photoreceptors in the mouse retina has been contentious (Pellikka et al. 2002; Krol et al. 2015; Quinn et al. 2017). This is likely due to the fact that our understanding of CRB1 expression primarily comes from antibody studies where it can be difficult to segregate cell types that are closely apposed. RNAseq analysis of isolated rod and cone photoreceptors (Kim et al. 2016) shows that Crb1 is expressed in photoreceptors (Fig. 41.2b,c) in addition to Muller glia. This is an important point because knowing which cell types express the gene is critical for mechanistic understanding of disease progression in animal models. It remains to be determined whether CRB1 function is similar in Muller glia and photoreceptors.
Fig. 41.2

Crb1 gene expression in the mouse retina. (a) Crb1 expression analyzed from RNAseq from whole mouse retina (GSE101986). (b) Crb1 expression analyzed from isolated rod (b) and cone (c) photoreceptor RNAseq (GSE74660)

41.3 CRB1 Is Important for Adherens Junction Integrity

Much of what we understand about CRB1 protein function is derived from drosophila Crumbs. The most commonly studied CRB1 protein isoform was chosen due to its close homology to the drosophila protein (Izaddoost et al. 2002). Drosophila Crumbs localizes to the stalk of the photoreceptor and is critical for positioning and maintaining adherens junction (AJ) integrity (Izaddoost et al. 2002; Pellikka et al. 2002). In mammals, CRB1 serves a similar function at the subapical region of the outer limiting membrane AJs between photoreceptors and Muller glia (Pellikka et al. 2002; van de Pavert et al. 2004). The cytoplasmic domain encoded by exon 12 of CRB1 interacts with cell polarity protein Pals1, which organizes complexes to regulate apical-basal polarity (Kantardzhieva et al. 2005). Relatively little is known about the function of the extracellular portion of the protein including what the interacting partners are.

41.4 Crb1 Mouse Models Do Not Recapitulate the Human Disease

There are two prevalent mouse models that disrupt the Crb1 locus and are used to model retinopathies. A spontaneous point mutant line (rd8) was discovered that contains a nonsense mutation in exon 9 of the gene likely resulting in a truncated protein (Mehalow et al. 2003). Mice homozygous for the rd8 mutation begin to show pseudorosettes in the outer nuclear layer detectable as early as 4–6 weeks of age (Mehalow et al. 2003; Mattapallil et al. 2012). Despite these ocular lesions, degeneration occurs slowly over the course of several months (Mehalow et al. 2003). A Crb1 null model (Crb1−/−) was generated by replacing exon 1 and the upstream promoter with a targeting vector (van de Pavert et al. 2004). This essentially eliminates generation of transcripts that use exon 1. However, it is unclear what effect it may have on putative transcripts that do not use exon 1 (Fig. 41.1b, c). In the Crb1−/− model, pseudorosettes developed by 3 months of age, and at 6 months of age large rosettes were apparent along with photoreceptor degeneration (van de Pavert et al. 2004). A notable feature of both rd8 and Crb1−/− models is that they fail to recapitulate the aggressive degeneration of the LCA and early-onset RP patients, causing one to speculate whether the disconnect in phenotypes is due to modifying genes or hypomorphic alleles.

41.5 The Path Forward

The variability of phenotype and age of onset of CRB1 retinopathies highlights the necessity of taking a bottom-up approach toward understanding CRB1 function. The apparent lack of correlation between mutation location and phenotypic outcome has perplexed researchers for more than a decade. The phenotypic variability is often explained by disease-modifying genes that act in concert with CRB1. While recent work in animal models has gained traction with this hypothesis (Pellissier et al. 2014; Luhmann et al. 2015), there are still several outstanding questions regarding CRB1 at the molecular and protein level that warrant further investigation.

Knowing the temporal and cell-type expression of CRB1 is paramount for understanding the basis of CRB1 retinopathies. For instance, does early expression by retinal progenitors contribute to the disease? Is the function of CRB1 in photoreceptors versus Muller glia equally important? Further, accurate gene quantification relies on proper gene annotation (Zhao and Zhang 2015); correct annotation of the CRB1 gene is necessary for expression analyses and determining the utility of current disease models. Finally, we need a detailed understanding of CRB1 protein functions to determine which are most relevant to the disease phenotype. By improving our understanding at the gene and protein levels, we can aim to more accurately diagnose CRB1 retinopathies and lay the groundwork for developing a therapy.

References

  1. Aleman TS, Cideciyan AV, Aguirre GK et al (2011) Human CRB1-associated retinal degeneration: comparison with the rd8 Crb1-mutant mouse model. Invest Ophthalmol Vis Sci 52:6898–6910CrossRefGoogle Scholar
  2. Alves CH, Pellissier LP, Wijnholds J (2014) The CRB1 and adherens junction complex proteins in retinal development and maintenance. Prog Retin Eye Res 40:35–52CrossRefGoogle Scholar
  3. Bujakowska K, Audo I, Mohand-Said S et al (2012) CRB1 mutations in inherited retinal dystrophies. Hum Mutat 33:306–315CrossRefGoogle Scholar
  4. den Hollander AI, Roepman R, Koenekoop RK et al (2008) Leber congenital amaurosis: genes, proteins and disease mechanisms. Prog Retin Eye Res 27:391–419CrossRefGoogle Scholar
  5. den Hollander AI, Johnson K, de Kok YJ et al (2001a) CRB1 has a cytoplasmic domain that is functionally conserved between human and Drosophila. Hum Mol Genet 10:2767–2773CrossRefGoogle Scholar
  6. den Hollander AI, Davis J, van der Velde-Visser SD et al (2004) CRB1 mutation spectrum in inherited retinal dystrophies. Hum Mutat 24:355–369CrossRefGoogle Scholar
  7. den Hollander AI, Heckenlively JR, van den Born LI et al (2001b) Leber congenital amaurosis and retinitis pigmentosa with Coats-like exudative vasculopathy are associated with mutations in the crumbs homologue 1 (CRB1) gene. Am J Hum Genet 69:198–203CrossRefGoogle Scholar
  8. den Hollander AI, ten Brink JB, de Kok YJ et al (1999) Mutations in a human homologue of Drosophila crumbs cause retinitis pigmentosa (RP12). Nat Genet 23:217–221CrossRefGoogle Scholar
  9. Hoshino A, Ratnapriya R, Brooks MJ et al (2017) Molecular anatomy of the developing human retina. Dev Cell 43:763–779 e764CrossRefGoogle Scholar
  10. Izaddoost S, Nam SC, Bhat MA et al (2002) Drosophila Crumbs is a positional cue in photoreceptor adherens junctions and rhabdomeres. Nature 416:178–183CrossRefGoogle Scholar
  11. Jacobson SG, Cideciyan AV, Aleman TS et al (2003) Crumbs homolog 1 (CRB1) mutations result in a thick human retina with abnormal lamination. Hum Mol Genet 12:1073–1078CrossRefGoogle Scholar
  12. Kantardzhieva A, Gosens I, Alexeeva S et al (2005) MPP5 recruits MPP4 to the CRB1 complex in photoreceptors. Invest Ophthalmol Vis Sci 46:2192–2201CrossRefGoogle Scholar
  13. Kim JW, Yang HJ, Oel AP et al (2016) Recruitment of rod photoreceptors from short-wavelength-sensitive cones during the evolution of nocturnal vision in mammals. Dev Cell 37:520–532CrossRefGoogle Scholar
  14. Krol J, Krol I, Alvarez CP et al (2015) A network comprising short and long noncoding RNAs and RNA helicase controls mouse retina architecture. Nat Commun 6:7305CrossRefGoogle Scholar
  15. Letunic I, Bork P (2018) 20 years of the SMART protein domain annotation resource. Nucleic Acids Res 46:D493–D496CrossRefGoogle Scholar
  16. Luhmann UF, Carvalho LS, Holthaus SM et al (2015) The severity of retinal pathology in homozygous Crb1rd8/rd8 mice is dependent on additional genetic factors. Hum Mol Genet 24:128–141CrossRefGoogle Scholar
  17. Mattapallil MJ, Wawrousek EF, Chan CC et al (2012) The Rd8 mutation of the Crb1 gene is present in vendor lines of C57BL/6N mice and embryonic stem cells, and confounds ocular induced mutant phenotypes. Invest Ophthalmol Vis Sci 53:2921–2927CrossRefGoogle Scholar
  18. Mehalow AK, Kameya S, Smith RS et al (2003) CRB1 is essential for external limiting membrane integrity and photoreceptor morphogenesis in the mammalian retina. Hum Mol Genet 12:2179–2189CrossRefGoogle Scholar
  19. Pellikka M, Tanentzapf G, Pinto M et al (2002) Crumbs, the Drosophila homologue of human CRB1/RP12, is essential for photoreceptor morphogenesis. Nature 416:143–149CrossRefGoogle Scholar
  20. Pellissier LP, Lundvig DM, Tanimoto N et al (2014) CRB2 acts as a modifying factor of CRB1-related retinal dystrophies in mice. Hum Mol Genet 23:3759–3771CrossRefGoogle Scholar
  21. Quinn PM, Pellissier LP, Wijnholds J (2017) The CRB1 complex: following the trail of crumbs to a feasible gene therapy strategy. Front Neurosci 11:175CrossRefGoogle Scholar
  22. Sun Y, Vandenbriele C, Kauskot A et al (2015) A human platelet receptor protein microarray identifies the high affinity immunoglobulin E receptor subunit alpha (FcepsilonR1alpha) as an activating platelet endothelium aggregation receptor 1 (PEAR1) ligand. Mol Cell Proteomics 14:1265–1274CrossRefGoogle Scholar
  23. Talib M, van Schooneveld MJ, van Genderen MM et al (2017) Genotypic and phenotypic characteristics of CRB1-associated retinal dystrophies: a long-term follow-up study. Ophthalmology 124:884–895CrossRefGoogle Scholar
  24. Tisi D, Talts JF, Timpl R et al (2000) Structure of the C-terminal laminin G-like domain pair of the laminin alpha2 chain harbouring binding sites for alpha-dystroglycan and heparin. EMBO J 19:1432–1440CrossRefGoogle Scholar
  25. van de Pavert SA, Kantardzhieva A, Malysheva A et al (2004) Crumbs homologue 1 is required for maintenance of photoreceptor cell polarization and adhesion during light exposure. J Cell Sci 117:4169–4177CrossRefGoogle Scholar
  26. Vincent A, Ng J, Gerth-Kahlert C et al (2016) Biallelic mutations in CRB1 underlie autosomal recessive familial foveal retinoschisis. Invest Ophthalmol Vis Sci 57:2637–2646CrossRefGoogle Scholar
  27. Zhao S, Zhang B (2015) A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification. BMC Genomics 16:97CrossRefGoogle Scholar

Copyright information

© Springer Nature Switzerland AG 2019

Authors and Affiliations

  • Thomas A. Ray
    • 1
    • 2
  • Kelly J. Cochran
    • 3
  • Jeremy N. Kay
    • 1
    • 2
    Email author
  1. 1.Department of NeurobiologyDuke University School of MedicineDurhamUSA
  2. 2.Department of OphthalmologyDuke University School of MedicineDurhamUSA
  3. 3.Department of Computer ScienceDuke UniversityDurhamUSA

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