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Modulation of Proteome and Phosphoproteome Under Abiotic Stress in Plants: An Overview

  • Subhankar Mohanty
  • Giridara Kumar Surabhi
Chapter

Abstract

Abiotic stress factors cause significant reduction in crop yield worldwide. Crop/plant tolerance to environmental stress is a complex trait, and it depends on the expression of specific set of stress related genes, proteins and metabolites, involved in the cascades of molecular networks, signal transduction, to cope with stress perception to alleviate the cellular damage caused by different stress factors. Application of high-throughput global omics-approaches such as transcriptomics, proteomics and metabolomics will provide comprehensive understanding of plant abiotic stress response. A comprehensive understanding of the regulation at all levels or one of these will provide better tools to improve crop plant performance under stress. A focus on combined proteome and phosphoproteome-based studies provide broader molecular understanding in a better way, and the knowledge obtained is useful for developing crop/plants with enhanced tolerance to abiotic stresses. The main aim of this review is to discuss proteome and phosphoproteome dynamic changes under different abiotic stress factors, such as drought, salinity, waterlogging, heavy metal and temperature stress. This review describes the recent studies on proteomic and phosphoproteomic approaches, which have been conducted on different crop/plants under abiotic stress conditions.

Keywords

Proteome Phosphoproteome Drought Salinity Waterlogging Temperature Heavy metal stress 

Abbreviations

2D-PAGE

Two-dimensional polyacrylamide gel electrophoresis

DIGE

Differential in gel electrophoresis

ESI

Electrospray ionization

ICAT

Isotope-coded affinity tags

IMAC

Immobilized metal affinity chromatography

iTRAQ

Isobaric tags for relative and absolute quantification

LC

Liquid chromatography

LCM

Laser capture micro-dissection

MALDI-TOF

Matrix assisted laser desorption/ionization-time of flight

MS

Mass spectrometry

MS/MS

Tandem mass spectrometry

MudPit

Multidimensional Protein Identification Technology

PTM

Post-translational modification

SILAC

Stable isotope labelling by amino acids in cell cultures

Notes

Acknowledgments

Work in the laboratory of Giridara Kumar Surabhi (GKS), supported by the Forest and Environment Department, Government of Odisha, India, is gratefully acknowledged. The authors apologize for being unable to cite all relevant papers.

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Copyright information

© Springer Nature Switzerland AG 2019

Authors and Affiliations

  • Subhankar Mohanty
    • 1
  • Giridara Kumar Surabhi
    • 1
  1. 1.Plant Molecular Biology and ‘OMICS’ LaboratoryRegional Plant Resource CentreBhubaneswarIndia

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