Abstract
This chapter mainly introduces the functional nucleic acid detection methods of 12 other metal ions in addition to the previous three chapters. Functional nucleic acid as a detection element is mainly used to construct various functional nucleic acid biosensors. These 12 ions mainly include some active metals of the first and second main groups and three kinds of transition metals (Fe2+, Fe3+, Ni2+, Mn2+) as well as lanthanide ions and uranyl ions. Among them, there are many methods for detecting functional nucleic acids of potassium ions.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
S.F. Torabi, P. Wu, C.E. McGhee, L. Chen, K. Hwang, N. Zheng, J. Cheng, Y. Lu, In vitro selection of a sodium-specific DNAzyme and its application in intracellular sensing. Proc. Natl. Acad. Sci. 112(19), 5903–5908 (2015)
W. Zhou, J. Ding, J. Liu, A highly specific sodium aptamer probed by 2-aminopurine for robust Na+ sensing. Nucleic Acids Res. 44(21), 10377–10385 (2016)
W. Zhou, R. Saran, Q. Chen, A new Na(+)-Dependent RNA-Cleaving DNAzyme with over 1000-fold rate acceleration by Ethanol. Chembiochem. 17(2), 159–163 (2016)
H. Sun, H. Chen, X. Zhang, Y. Liu, A. Guan, Q. Li, Q. Yang, Y. Shi, S. Xu, Y. Tang, Colorimetric detection of sodium ion in serum based on the G-quadruplex conformation related DNAzyme activity. Anal. Chim. Acta. 912, 133–138 (2016)
C.C. Huang, H.T. Chang, Aptamer-based fluorescence sensor for rapid detection of potassium ions in urine. Chem. Commun. 12, 1461–1463 (2008)
H. Qin, J. Ren, J. Wang, N.W. Luedtke, E. Wang, G-quadruplex-modulated fluorescence detection of potassium in the presence of a 3500-fold excess of sodium ions. Anal. Chem. 82(19), 8356–8360 (2010)
H. Ueyama, M. Takagi, S. Takenaka, A novel potassium sensing in aqueous media with a synthetic oligonucleotide derivative. Fluorescence resonance energy transfer associated with guanine quartet− potassium ion complex formation. J. Am. Chem. Soc. 124(48), 14286–14287 (2002)
X. Fan, H. Li, J. Zhao, F. Lin, L. Zhang, Y. Zhang, S. Yao, A novel label-free fluorescent sensor for the detection of potassium ion based on DNAzyme. Talanta. 89, 57–62 (2012)
A.E. Radi, C.K. O’Sullivan, Aptamer conformational switch as sensitive electrochemical biosensor for potassium ion recognition. Chem. Commun. 32, 3432–3434 (2006)
L. Yang, Z. Qing, C. Liu, Q. Tang, J. Li, S. Yang, J. Zheng, R. Yang, W. Tan, Direct fluorescent detection of blood potassium by ion-selective formation of intermolecular G-Quadruplex and ligand binding. Anal. Chem. 88(18), 9285–9292 (2016)
L. Liu, Y. Shao, J. Peng, C. Huang, H. Liu, L. Zhang, Molecular rotor-based fluorescent probe for selective recognition of hybrid G-quadruplex and as a K+ sensor. Anal. Chem. 86(3), 1622–1631 (2014)
T. Li, E. Wang, S. Dong, Parallel G-quadruplex-specific fluorescent probe for monitoring DNA structural changes and label-free detection of potassium ion. Anal. Chem. 82(18), 7576–7580 (2010)
Z.S. Wu, C.R. Chen, G.L. Shen, R.Q. Yu, Reversible electronic nanoswitch based on DNA G-quadruplex conformation: a platform for single-step, reagentless potassium detection. Biomaterials 29(17), 2689–2696 (2008)
S. Zhang, R. Zhang, B. Ma, J. Qiu, J. Li, Y. Sang, W. Liu, H. Liu, Specific detection of potassium ion in serum by a modified G-quadruplex method. RSC Adv. 6(48), 41999–42007 (2016)
C.R. Hampton, H.C. Bowen, M.R. Broadley, J.P. Hammond, A. Mead, K.A. Payne, J. Pritchard, P.J. White, Cesium toxicity in Arabidopsis. Plant Physiol. 136(3), 3824–3837 (2004)
J.C. Chaput, C. Switzer, A DNA pentaplex incorporating nucleobase quintets. Proc. Natl. Acad. Sci. 96(19), 10614–10619 (1999)
S. Lin, C. Yang, Z. Mao, B. He, Y.T. Wang, C.H. Leung, D.L. Ma, A G-pentaplex-based assay for Cs+ ions in aqueous solution using a luminescent Ir (III) complex. Biosens. Bioelectron. 77, 609–612 (2016)
A.R. Feldman, D. Sen, A new and efficient DNA enzyme for the sequence-specific cleavage of RNA. J. Mol. Biol. 313(2), 283–294 (2001)
W. Zhou, R. Saran, P.J.J. Huang, J. Ding, J. Liu, An exceptionally selective DNA cooperatively binding two Ca2+ ions. Chembiochem 18(6), 518–522 (2017)
W. Zhou, Y. Zhang, J. Ding, J. Liu, In vitro selection in serum: RNA-cleaving DNAzymes for measuring Ca2+ and Mg2+. ACS Sens. 1(5), 600–606 (2016)
A. Peracchi, Preferential activation of the 8-17 deoxyribozyme by Ca2+ ions evidence for the identity of 8 to 17 with the catalytic domain of the MG5 deoxyribozyme. J. Biol. Chem. 275(16), 11693–11697 (2000)
P.-J.J. Huang, M. Vazin, Ż. Matuszek, J. Liu, A new heavy lanthanide-dependent DNAzyme displaying strong metal cooperativity and unrescuable phosphorothioate effect. Nucleic Acids Res. 43(1), 461–469 (2015)
P.J.J. Huang, J. Lin, J. Cao, M. Vazin, J. Liu, Ultrasensitive DNAzyme beacon for lanthanides and metal speciation. Anal. Chem. 86(3), 1816–1821 (2014)
R. Nishiyabu, N. Hashimoto, T. Cho, K. Watanabe, T. Yasunaga, A. Endo, K. Kaneko, T. Niidome, M. Murata, C. Adachi, Nanoparticles of adaptive supramolecular networks self-assembled from nucleotides and lanthanide ions. J. Am. Chem. Soc. 131(6), 2151–2158 (2009)
V. Dokukin, S.K. Silverman, Lanthanide ions as required cofactors for DNA catalysts. Chem. Sci. 3(5), 1707–1714 (2012)
P.J.J. Huang, M. Vazin, J. Liu, In vitro selection of a new lanthanide-dependent DNAzyme for ratiometric sensing lanthanides. Anal. Chem. 86(19), 9993–9999 (2014)
P. Zhou, B. Gu, Extraction of oxidized and reduced forms of uranium from contaminated soils: Effects of carbonate concentration and pH. Environ. Sci. Technol. 39(12), 4435–4440 (2005)
J. Liu, A.K. Brown, Meng X. A catalytic beacon sensor for uranium with parts-per-trillion sensitivity and millionfold selectivity. Proc. Natl. Acad. Sci. U S A. 104(7), 2056–2061 (2007)
S. Basu, A.A. Szewczak, M. Cocco, S.A. Strobel, Direct detection of monovalent metal ion binding to a DNA G-quartet by 205Tl NMR. J. Am. Chem. Soc. 122(13), 3240–3241 (2000)
M. Hoang, P.J.J. Huang, J. Liu, G-quadruplex DNA for fluorescent and colorimetric detection of thallium (I). ACS Sens. 1(2), 137–143 (2015)
P.J.J. Huang, M. Vazin, J. Liu, Desulfurization activated phosphorothioate DNAzyme for the detection of thallium. Anal. Chem. 87(20), 10443–10449 (2015)
M. Zhang, Y.Q. Liu, B.C. Ye, Mononucleotide-modified metal nanoparticles: an efficient colorimetric probe for selective and sensitive detection of aluminum (III) on living cellular surfaces. Chem Eur J 18(9), 2507–2513 (2012)
Z. Liu, S.H. Mei, J.D. Brennan, Y. Li, Assemblage of signaling DNA enzymes with intriguing metal-ion specificities and pH dependences. J. Am. Chem. Soc. 125(25), 7539–7545 (2003)
W. Zhou, R. Saran, J. Liu, Metal Sensing by DNA. Chem. Rev. 117(12), 8272 (2017)
Y. Shi, G. Zhao, W. Kong, Genetic analysis of riboswitch-mediated transcriptional regulation responding to Mn2+ in salmonella. J. Biol. Chem. 289(16), 11353–11366 (2014)
M. Dambach, M. Sandoval, T.B. Updegrove, V. Anantharaman, L. Aravind, L.S. Waters, G. Storz, The ubiquitous yybP-ykoY riboswitch is a manganese-responsive regulatory element. Mol. Cell 57(6), 1099–1109 (2015)
P. Aich, S.L. Labiuk, L.W. Tari, L.J. Delbaere, W.J. Roesler, K.J. Falk, R.P. Steer, J.S. Lee, M-DNA: a complex between divalent metal ions and DNA which behaves as a molecular wire. J. Mol. Biol. 294(2), 477–485 (1999)
H.P. Hofmann, S. Limmer, V. Hornung, M. Sprinzl, Ni2+-binding RNA motifs with an asymmetric purine-rich internal loop and a GA base pair. RNA 3(11), 1289–1300 (1997)
L. Lanceta, J.M. Mattingly, C. Li, J.W. Eaton, How heme oxygenase-1 prevents heme-induced cell death. PLoS One 10(8), e0134144 (2015)
M.W. Hentze, L.C. Kühn, Molecular control of vertebrate iron metabolism: mRNA-based regulatory circuits operated by iron, nitric oxide, and oxidative stress. Proc. Natl. Acad. Sci. U S A. 93(16), 8175–8182 (1996)
Author information
Authors and Affiliations
Rights and permissions
Copyright information
© 2018 Springer Nature Singapore Pte Ltd.
About this chapter
Cite this chapter
Luo, Y. (2018). Functional Nucleic Acid Based Biosensors for Other Metal Ion Detection. In: Functional Nucleic Acid Based Biosensors for Food Safety Detection. Springer, Singapore. https://doi.org/10.1007/978-981-10-8219-1_7
Download citation
DOI: https://doi.org/10.1007/978-981-10-8219-1_7
Published:
Publisher Name: Springer, Singapore
Print ISBN: 978-981-10-8218-4
Online ISBN: 978-981-10-8219-1
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)