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Shape-Aware Deep Convolutional Neural Network for Vertebrae Segmentation

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Computational Methods and Clinical Applications in Musculoskeletal Imaging (MSKI 2017)

Abstract

Shape is an important characteristic of an object, and a fundamental topic in computer vision. In image segmentation, shape has been widely used in segmentation methods, like the active shape model, to constrain a segmentation result to a class of learned shapes. However, to date, shape has been underutilized in deep segmentation networks. This paper addresses this gap by introducing a shape-aware term in the segmentation loss function. A deep convolutional network has been adapted in a novel cervical vertebrae segmentation framework and compared with traditional active shape model-based methods. The proposed framework has been trained on an augmented dataset of 26370 vertebrae and tested on 792 vertebrae collected from a total of 296 real-life emergency room lateral cervical X-ray images. The proposed framework achieved an average error of 1.11 pixels, signifying a 36% improvement over the traditional methods. The introduction of the novel shape-aware term in the loss function significantly improved the performance by further 12%, achieving an average error of only 0.99 pixel.

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Acknowledgements

We gratefully acknowledge the support of NVIDIA Corporation with the donation of the Titan X Pascal GPU used for this research.

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Correspondence to S. M. Masudur Rahman Al Arif .

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Al Arif, S.M.M.R., Knapp, K., Slabaugh, G. (2018). Shape-Aware Deep Convolutional Neural Network for Vertebrae Segmentation. In: Glocker, B., Yao, J., Vrtovec, T., Frangi, A., Zheng, G. (eds) Computational Methods and Clinical Applications in Musculoskeletal Imaging. MSKI 2017. Lecture Notes in Computer Science(), vol 10734. Springer, Cham. https://doi.org/10.1007/978-3-319-74113-0_2

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  • DOI: https://doi.org/10.1007/978-3-319-74113-0_2

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