Abstract
In this paper the modification of genetic algorithm inspired by the epigenetic process is presented. The results of the efficiency of the proposed modified algorithm are compared with standard genetic algorithm and a tool which does not use evolutionary processes.
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References
Agarwal, P., Chauhan, R.: Alignment of multiple sequences using ga method. Int. J. Emerg. Technol. Comput. Appl. Sci. 4, 411–421 (2013)
Anbarasu, A., Narayanasamy, P., Sundararajan, V.: Multiple molecular sequence alignment by island parallel genetic algorithm. Curr. Sci. 78, 858–863 (2000)
Carey, N.: The Epigenetics Revolution: How Modern Biology is Rewriting Our Understanding of Genetics, Disease, and Inheritance. Columbia University Press (2013)
Goldberg, D.E.: Genetic Algorithms in Search. Scientific-Technical Publisher, Warsaw (2003). (in Polish)
Górny, A., Tkacz, M.A.: Using artificial neural networks for processing data gained via opendap and consolidated from different databases on distributed servers. In: Szczepaniak, P.S., Kacprzyk, J., Niewiadomski, A. (eds.) Advances in Web Intelligence Third International Atlantic Web Intelligence Conference, 2005. LNCS, vol. 3528, pp. 176–182. Springer (2005)
Gupta, R., Agarwal, P., Soni, A.: Genetic algorithm based approach for obtaining alignment of multiple sequences. Int. J. Adv. Comput. Sci. Appl. 3(12), 180–185 (2012)
Manning, T., Sleator, R., Walsh, P.: Naturally selecting solutions: the use of genetic algorithms in bioinformatics. Bioengineered 4(5), 266–278 (2013)
Michalewicz, Z.: Genetic Algorithms \(+\) Data Structure \(=\) Evolutionary Program. Scientific-Technical Publisher, Warsaw (2004). (in Polish)
Radenbaugh, A.J.: Applications of Genetic Algorithms in Bioinformatics. San Jose State University, Master Thesis (2008)
Tkacz, M.: Artificial neural networks in incomplete data sets processing. In: Kłopotek, M.A., Wierzchoń, S.T., Trojanowski, K. (eds.) IIS: IIPWM’05, pp. 577–584. Advances in Soft Computing, Springer (2005)
Tkacz, M.: Artificial neural network resistance to incomplete data. In: Kłopotek, M.A., Wierzchoń, S.T., Trojanowski, K. (eds.) IIS: IIPWM’06, pp. 437–443. Advances in Soft Computing, Springer (2006)
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Chromiński, K., Boryczka, M. (2016). Epigenetically Inspired Modification of Genetic Algorithm and His Efficiency on Biological Sequence Alignment. In: Czarnowski, I., Caballero, A.M., Howlett, R.J., Jain, L.C. (eds) Intelligent Decision Technologies 2016. Smart Innovation, Systems and Technologies, vol 57. Springer, Cham. https://doi.org/10.1007/978-3-319-39627-9_9
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DOI: https://doi.org/10.1007/978-3-319-39627-9_9
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Online ISBN: 978-3-319-39627-9
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