Skip to main content

Spatial Characterisation of Fibre Response Functions for Spherical Deconvolution in Multiple Sclerosis

  • Conference paper
  • First Online:
Computational Diffusion MRI (MICCAI 2019)

Abstract

Brain tractography based on diffusion-weighted (DW) MRI data has been increasingly used to investigate crucial pathophysiological aspects of several neurological conditions, including multiple sclerosis (MS). The advent of fibre tracking methods based on constrained spherical deconvolution (CSD), which recovers the fibre orientation distribution function (fODF) by performing a single-kernel (or uniform-kernel) deconvolution of the measured DW signals with non-negativity constraints, has meant an important breakthrough. However, it is unclear whether using a uniform kernel deconvolution of the measured DW signals for the whole brain is appropriate, especially in pathology. In this study, our main aim was to explore the validity of using a uniform fibre kernel for spherical deconvolution in a cohort of 19 patients with a first inflammatory-demyelinating attack of the central nervous system suggestive of MS and 12 age-matched healthy controls. In particular, considering that the number of peaks is a key feature the fODF and is known to impact directly on downstream fibre tracking, we assessed the association between patient-wise mean number of (fODF) peaks in the non-lesional white matter obtained with a uniform kernel and the bias or differences in the estimation of local diffusion properties when a uniform kernel (instead of a locally-fitted voxel-wise kernel) was used. Finally, in order to support our in-vivo results, we performed a simulation analysis to further assess the theoretical impact of using a uniform kernel. Our in-vivo results showed non-significant trends towards an influence of the bias in the estimation of the local diffusion properties when a uniform kernel was used on the number of peaks. In the simulation analysis, a clear association was observed between such bias and the number of peaks. All this suggests that the use of a uniform kernel to estimate the fODFs at the voxel level may not be adequate. However, we acknowledge that the approach followed here has some limitations, mainly derived from the methods used to estimate the voxel-wise local diffusion properties. Further investigations using larger in-vivo data sets and performing more comprehensive simulation analyses are therefore warranted.

Supported by ECTRIMS Post-doctoral Research Fellowships, Horizon2020-EU.3.1 CDS-QUAMRI project (ref: 634541), EPSRC Platform Grant for medical image computing for next-generation healthcare technology (ref: EP/M020533/1), Guarantors of Brain Non-Clinical Post-doctoral Fellowships, Spinal Research, Craig H. Neilsen Foundation, Wings for Life, Multiple Sclerosis Society of Great Britain and Northern Ireland, the NIHR UCLH Biomedical Research Centre. The NMR unit where this work was performed is supported by grants from the Multiple Sclerosis Society of Great Britain and Northern Ireland, Philips Healthcare, and by the UCL/UCLH NIHR (National Institute for Health Research) BRC (Biomedical Research Centre.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Ciccarelli, O., et al.: Diffusion-based tractography in neurological disorders: concepts, applications, and future developments. Lancet Neurol 7(8), 715–727 (2008)

    Article  Google Scholar 

  2. Tournier, J.D., Calamante, F., Connelly, A.: Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution. Neuroimage 35(4), 1459–1472 (2007)

    Article  Google Scholar 

  3. Tuch, D.S.: Q-ball imaging. Magn. Reson. Med. 52(6), 1358–1372 (2004)

    Article  Google Scholar 

  4. Basser, P.J., et al.: In vivo fiber tractography using DT-MRI data. Magn. Reson. Med. 44(4), 625–632 (2000)

    Article  Google Scholar 

  5. Kaden, E., Kruggel, F., Alexander, D.C.: Quantitative mapping of the per-axon diffusion coefficients in brain white matter. Magn. Reson. Med. 75(4), 1752–1763 (2016)

    Article  Google Scholar 

  6. Collorone, S., et al.: Neurite Orientation Dispersion and Density Imaging (NODDI) reflects early microstructural brain tissue changes in clinically isolated syndrome (CIS). In: 32nd Congress of the European-Committee-for-Treatment-and-Research-in-Multiple-Sclerosis (ECTRIMS), London (2016)

    Google Scholar 

  7. Thompson, A.J., et al.: Diagnosis of multiple sclerosis: 2017 revisions of the McDonald criteria. Lancet Neurol 17(2), 162–173 (2018)

    Article  Google Scholar 

  8. Hickman, S.I., et al.: Technical note: the comparison of hypointense lesions from ‘pseudo-T1’ and T1-weighted images in secondary progressive multiple sclerosis. Mult. Scler. J. 8(5), 433–435 (2002)

    Article  Google Scholar 

  9. Prados, F., et al.: A multi-time-point modality-agnostic patch-based method for lesion filling in multiple sclerosis. Neuroimage 139, 376–384 (2016)

    Article  Google Scholar 

  10. Cardoso, M.J., et al.: Geodesic information flows: spatially-variant graphs and their application to segmentation and fusion. IEEE Trans. Med. Imaging 34(9), 1976–1988 (2015)

    Article  MathSciNet  Google Scholar 

  11. Prados, F., et al., NiftyWeb: web based platform for image processing on the cloud. In: 24th Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM), Singapore (2016)

    Google Scholar 

  12. Andersson, J.L., Sotiropoulos, S.N.: An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging. Neuroimage 125, 1063–1078 (2016)

    Article  Google Scholar 

  13. Bhushan, C., et al.: Correcting susceptibility-induced distortion in diffusion-weighted MRI using constrained nonrigid registration. In: Signal and Information Processing Association Annual Summit and Conference APSIPA Asia-Pacific, Hollywood, California (2012)

    Google Scholar 

  14. Dhollander, T., Raffelt, D., Connelly, A.: Unsupervised: 3-tissue response function estimation from single-shell or multi-shell diffusion MR data without a co-registered T1 image. MRI, Lisbon (2016)

    Google Scholar 

  15. Tax, C.M., et al.: Recursive calibration of the fiber response function for spherical deconvolution of diffusion MRI data. Neuroimage 86, 67–80 (2014)

    Article  Google Scholar 

  16. Jeurissen, B., et al.: Investigating the prevalence of complex fiber configurations in white matter tissue with diffusion magnetic resonance imaging. Hum. Brain Mapp. 34(11), 2747–2766 (2013)

    Article  Google Scholar 

  17. Tur, C., et al.: Longitudinal evidence for anterograde trans-synaptic degeneration after optic neuritis. Brain 139(3), 816–828 (2016)

    Article  Google Scholar 

  18. Maier-Hein, K.H., et al.: The challenge of mapping the human connectome based on diffusion tractography. Nat. Commun. 8(1), 1349 (2017)

    Google Scholar 

  19. Anderson, A.W.: Measurement of fiber orientation distributions using high angular resolution diffusion imaging. Magn. Reson. Med. 54(5), 1194–1206 (2005)

    Article  Google Scholar 

  20. Schultz, T., Groeschel, S.: Auto-calibrating spherical deconvolution based on ODF sparsity. In: International Conference on Medical Image Computing and Computer-Assisted Intervention, vol. 16(1), pp. 663–670 (2013)

    Chapter  Google Scholar 

  21. Parker, G.D., et al.: A pitfall in the reconstruction of fibre ODFs using spherical deconvolution of diffusion MRI data. Neuroimage 65, 433–448 (2013)

    Article  Google Scholar 

  22. Kaden, E., et al.: Multi-compartment microscopic diffusion imaging. Neuroimage 139, 346–359 (2016)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Carmen Tur .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Tur, C., Grussu, F., Prados, F., Collorone, S., Wheeler-Kingshott, C.A.M.G., Ciccarelli, O. (2019). Spatial Characterisation of Fibre Response Functions for Spherical Deconvolution in Multiple Sclerosis. In: Bonet-Carne, E., Grussu, F., Ning, L., Sepehrband, F., Tax, C. (eds) Computational Diffusion MRI. MICCAI 2019. Mathematics and Visualization. Springer, Cham. https://doi.org/10.1007/978-3-030-05831-9_21

Download citation

Publish with us

Policies and ethics