Abstract
Historically, the muscle gene therapy field has been primarily focused on replacing defective or missing genes underlying recessive disorders and has matured to the point where several gene replacement strategies have now been tested or are underway in human clinical trials. Unfortunately, gene replacement strategies are not indicated for treating dominant diseases, where reduction or elimination of an abnormal allele would be needed, and as a result, gene therapies for dominant muscular dystrophies have lagged behind. Importantly, the emergence of RNA interference (RNAi) as a gene-silencing tool provided a means to begin closing this development gap. In the first edition of this chapter of Muscle Gene Therapy, we discussed the prospects of combining RNAi and gene therapy to treat dominant muscle diseases, but proof of concept for its practical usage had not been demonstrated at the time. Here, in this second edition, we update our current understanding of the mechanisms underlying RNAi, compile several preclinical examples of RNAi-based gene therapies for muscle diseases, and discuss current prospects for translating these strategies toward the clinic.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
INSERM FMoHa (2017) Prevalence of rare diseases: bibliographic data. Orphanet report. Available from: http://www.orpha.net/orphacom/cahiers/docs/GB/Prevalence_of_rare_diseases_by_alphabetical_list.pdf. Cited 2008
National Institutes of Health Office of Rare Diseases Research (2009) Rare diseases and related terms. Available from: http://rarediseases.info.nih.gov/RareDiseaseList.aspx?PageID=1
Mendell JR et al (2012) Evidence-based path to newborn screening for Duchenne muscular dystrophy. Ann Neurol 71(3):304–313
Harper PS (1989) Myotonic dystrophy, 2nd edn. W.B. Saunders, London
Flanigan KM et al (2001) Genetic characterization of a large, historically significant Utah kindred with facioscapulohumeral dystrophy. Neuromuscul Disord 11(6–7):525–529
Tawil R, Van Der Maarel SM (2006) Facioscapulohumeral muscular dystrophy. Muscle Nerve 34(1):1–15
Deenen JC et al (2014) Population-based incidence and prevalence of facioscapulohumeral dystrophy. Neurology 83(12):1056–1059
Fire A et al (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391(6669):806–811
Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116(2):281–297
Elbashir SM et al (2001) Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411(6836):494–498
Elbashir SM, Lendeckel W, Tuschl T (2001) RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes Dev 15(2):188–200
Lai EC (2002) Micro RNAs are complementary to 3’ UTR sequence motifs that mediate negative post-transcriptional regulation. Nat Genet 30(4):363–364
Lagos-Quintana M et al (2001) Identification of novel genes coding for small expressed RNAs. Science 294(5543):853–858
Lagos-Quintana M et al (2003) New microRNAs from mouse and human. RNA 9(2):175–179
Molnar A et al (2009) Highly specific gene silencing by artificial microRNAs in the unicellular alga Chlamydomonas reinhardtii. Plant J 58(1):165–174
Molnar A et al (2007) miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature 447(7148):1126–1129
Zeng Y, Cai X, Cullen BR (2005) Use of RNA polymerase II to transcribe artificial microRNAs. Methods Enzymol 392:371–380
Boudreau RL, Martins I, Davidson BL (2009) Artificial microRNAs as siRNA shuttles: improved safety as compared to shRNAs in vitro and in vivo. Mol Ther 17(1):169–175
Lagos-Quintana M et al (2002) Identification of tissue-specific microRNAs from mouse. Curr Biol 12(9):735–739
Borchert GM, Lanier W, Davidson BL (2006) RNA polymerase III transcribes human microRNAs. Nat Struct Mol Biol 13(12):1097–1101
Cai X, Hagedorn CH, Cullen BR (2004) Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. RNA 10(12):1957–1966
Lee Y et al (2004) MicroRNA genes are transcribed by RNA polymerase II. EMBO J 23(20):4051–4060
Gregory RI et al (2004) The microprocessor complex mediates the genesis of microRNAs. Nature 432(7014):235–240
Han J et al (2004) The Drosha-DGCR8 complex in primary microRNA processing. Genes Dev 18(24):3016–3027
Landthaler M, Yalcin A, Tuschl T (2004) The human DiGeorge syndrome critical region gene 8 and its D. melanogaster homolog are required for miRNA biogenesis. Curr Biol 14(23):2162–2167
Lee Y et al (2003) The nuclear RNase III Drosha initiates microRNA processing. Nature 425(6956):415–419
Han J et al (2006) Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex. Cell 125(5):887–901
Zeng Y, Cullen BR (2004) Structural requirements for pre-microRNA binding and nuclear export by Exportin 5. Nucleic Acids Res 32(16):4776–4785
Provost P et al (2002) Ribonuclease activity and RNA binding of recombinant human Dicer. EMBO J 21(21):5864–5874
Zhang H et al (2002) Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP. EMBO J 21(21):5875–5885
Zhang H et al (2004) Single processing center models for human Dicer and bacterial RNase III. Cell 118(1):57–68
Chendrimada TP et al (2005) TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing. Nature 436(7051):740–744
Forstemann K et al (2005) Normal microRNA maturation and germ-line stem cell maintenance requires loquacious, a double-stranded RNA-binding domain protein. PLoS Biol 3(7):e236
Matranga C et al (2005) Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes. Cell 123(4):607–620
Ro S et al (2007) Tissue-dependent paired expression of miRNAs. Nucleic Acids Res 35(17):5944–5953
Lewis BP, Burge CB, Bartel DP (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120(1):15–20
Rose SD et al (2005) Functional polarity is introduced by Dicer processing of short substrate RNAs. Nucleic Acids Res 33(13):4140–4156
Paddison PJ et al (2002) Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells. Genes Dev 16(8):948–958
Sibley CR et al (2012) The biogenesis and characterization of mammalian microRNAs of mirtron origin. Nucleic Acids Res 40(1):438–448
Harper SQ et al (2005) RNA interference improves motor and neuropathological abnormalities in a Huntington’s disease mouse model. Proc Natl Acad Sci U S A 102(16):5820–5825
Xia H et al (2004) RNAi suppresses polyglutamine-induced neurodegeneration in a model of spinocerebellar ataxia. Nat Med 10(8):816–820
Grimm D et al (2006) Fatality in mice due to oversaturation of cellular microRNA/short hairpin RNA pathways. Nature 441(7092):537–541
Fechner H et al (2008) Cardiac-targeted RNA interference mediated by an AAV9 vector improves cardiac function in coxsackievirus B3 cardiomyopathy. J Mol Med 86(9):987–997
Bisset DR et al (2015) Therapeutic impact of systemic AAV-mediated RNA interference in a mouse model of myotonic dystrophy. Hum Mol Genet 24(17):4971–4983
Bortolanza S et al (2011) AAV6-mediated systemic shRNA delivery reverses disease in a mouse model of facioscapulohumeral muscular dystrophy. Mol Ther 19(11):2055–2064
Liu J et al (2014) RNAi-mediated gene silencing of mutant myotilin improves myopathy in LGMD1A mice. Mol Ther Nucleic Acids 3:e160
Malerba A et al (2017) PABPN1 gene therapy for oculopharyngeal muscular dystrophy. Nat Commun 8:14848
Wallace LM et al (2011) RNA interference improves myopathic phenotypes in mice over-expressing FSHD region gene 1 (FRG1). Mol Ther 19(11):2048–2054
Wallace LM et al (2012) RNA interference inhibits DUX4-induced muscle toxicity in vivo: implications for a targeted FSHD therapy. Mol Ther 20(7):1417–1423
Du G et al (2006) Design of expression vectors for RNA interference based on miRNAs and RNA splicing. FEBS J 273(23):5421–5427
Harper SQ et al (2006) Optimization of feline immunodeficiency virus vectors for RNA interference. J Virol 80(19):9371–9380
Li MJ et al (2003) Inhibition of HIV-1 infection by lentiviral vectors expressing Pol III-promoted anti-HIV RNAs. Mol Ther 8(2):196–206
McBride JL et al (2008) Artificial miRNAs mitigate shRNA-mediated toxicity in the brain: implications for the therapeutic development of RNAi. Proc Natl Acad Sci U S A 105(15):5868–5873
Grimm D (2011) The dose can make the poison: lessons learned from adverse in vivo toxicities caused by RNAi overexpression. Silence 2:8
Mook OR et al (2009) Allele-specific cancer cell killing in vitro and in vivo targeting a single-nucleotide polymorphism in POLR2A. Cancer Gene Ther 16(6):532–538
Saydam O et al (2005) Herpes simplex virus 1 amplicon vector-mediated siRNA targeting epidermal growth factor receptor inhibits growth of human glioma cells in vivo. Mol Ther 12(5):803–812
Tacere Therapeutics, Inc. (2013–2016) Safety and efficacy study of single doses of TT-034 in patients with chronic hepatitis C. C.g. National Institutes of Health (ed). https://clinicaltrials.gov/ct2/show/NCT01899092
Quinzii CM et al (2008) X-linked dominant scapuloperoneal myopathy is due to a mutation in the gene encoding four-and-a-half-LIM protein 1. Am J Hum Genet 82(1):208–213
Corbett MA et al (2005) An alphaTropomyosin mutation alters dimer preference in nemaline myopathy. Ann Neurol 57(1):42–49
de Haan A et al (2002) Skeletal muscle of mice with a mutation in slow alpha-tropomyosin is weaker at lower lengths. Neuromuscul Disord 12(10):952–957
Durling HJ et al (2002) De novo missense mutation in a constitutively expressed exon of the slow alpha-tropomyosin gene TPM3 associated with an atypical, sporadic case of nemaline myopathy. Neuromuscul Disord 12(10):947–951
Ilkovski B et al (2008) Disease severity and thin filament regulation in M9R TPM3 nemaline myopathy. J Neuropathol Exp Neurol 67(9):867–877
Kee AJ, Hardeman EC (2008) Tropomyosins in skeletal muscle diseases. Adv Exp Med Biol 644:143–157
Laing NG et al (1995) A mutation in the alpha tropomyosin gene TPM3 associated with autosomal dominant nemaline myopathy NEM1. Nat Genet 10(2):249
Penisson-Besnier I et al (2007) A second pedigree with autosomal dominant nemaline myopathy caused by TPM3 mutation: a clinical and pathological study. Neuromuscul Disord 17(4):330–337
Tan P et al (1999) Homozygosity for a nonsense mutation in the alpha-tropomyosin slow gene TPM3 in a patient with severe infantile nemaline myopathy. Neuromuscul Disord 9(8):573–579
Lehtokari VL et al (2008) Identification of a founder mutation in TPM3 in nemaline myopathy patients of Turkish origin. Eur J Hum Genet 16(9):1055–1061
Rethinasamy P et al (1998) Molecular and physiological effects of alpha-tropomyosin ablation in the mouse. Circ Res 82(1):116–123
Tang G (2005) siRNA and miRNA: an insight into RISCs. Trends Biochem Sci 30(2):106–114
Miller VM et al (2003) Allele-specific silencing of dominant disease genes. Proc Natl Acad Sci U S A 100(12):7195–7200
Rodriguez-Lebron E, Paulson HL (2006) Allele-specific RNA interference for neurological disease. Gene Ther 13(6):576–581
Schwarz DS et al (2006) Designing siRNA that distinguish between genes that differ by a single nucleotide. PLoS Genet 2(9):e140
Miller JRC et al (2017) Allele-selective suppression of mutant huntingtin in primary human blood cells. Sci Rep 7:46740
McCaffrey AP et al (2002) RNA interference in adult mice. Nature 418(6893):38–39
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2019 Springer Nature Switzerland AG
About this chapter
Cite this chapter
Harper, S.Q. (2019). RNAi Therapy for Dominant Muscular Dystrophies and Other Myopathies. In: Duan, D., Mendell, J. (eds) Muscle Gene Therapy. Springer, Cham. https://doi.org/10.1007/978-3-030-03095-7_28
Download citation
DOI: https://doi.org/10.1007/978-3-030-03095-7_28
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-03094-0
Online ISBN: 978-3-030-03095-7
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)