Research in Computational Molecular Biology

9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005. Proceedings

  • Satoru Miyano
  • Jill Mesirov
  • Simon Kasif
  • Sorin Istrail
  • Pavel A. Pevzner
  • Michael Waterman
Part of the Lecture Notes in Computer Science book series (LNCS, volume 3500)

Table of contents

  1. Front Matter
  2. Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks

    1. Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan
      Pages 1-13
    2. Ariel Jaimovich, Gal Elidan, Hanah Margalit, Nir Friedman
      Pages 14-30
    3. Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Shamir
      Pages 31-47
    4. Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski
      Pages 48-65
    5. Brendan J. Frey, Quaid D. Morris, Mark Robinson, Timothy R. Hughes
      Pages 66-82
    6. Doron Lipson, Yonatan Aumann, Amir Ben-Dor, Nathan Linial, Zohar Yakhini
      Pages 83-100
  3. Keynote

    1. Dmitri Papatsenko, Mike Levine
      Pages 101-101
    2. Susan Lindquist, Ernest Fraenkel, Tiago Outeiro, Aaron Gitler, Julie Su, Anil Cashikar et al.
      Pages 102-102
    3. Kuen-Pin Wu, Jia-Ming Chang, Jun-Bo Chen, Chi-Fon Chang, Wen-Jin Wu, Tai-Huang Huang et al.
      Pages 103-117
    4. Marshall Bern, Jindong Chen, Hao Chi Wong
      Pages 118-132
    5. Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson, Ron Y. Pinter, Zohar Yakhini
      Pages 133-151
    6. Can Alkan, Emre Karakoç, Joseph H. Nadeau, S. Cenk Şahinalp, Kaizhong Zhang
      Pages 152-171
    7. Vineet Bafna, Haixu Tang, Shaojie Zhang
      Pages 172-187
    8. Charles DeLisi
      Pages 188-188
    9. Kim R. Rasmussen, Jens Stoye, Eugene W. Myers
      Pages 189-203
    10. Sing-Hoi Sze, Yue Lu, Qingwu Yang
      Pages 204-216
    11. Daniel H. Huson, Tobias Klöpper, Pete J. Lockhart, Mike A. Steel
      Pages 233-249
    12. Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot
      Pages 250-264

About these proceedings

Introduction

This volume contains the papers presented at the 9th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2005), which was held in Cambridge, Massachusetts, on May 14–18, 2005. The RECOMB conference series was started in 1997 by Sorin Istrail, Pavel Pevzner and Michael Waterman. The list of previous meetings is shown below in the s- tion “Previous RECOMB Meetings. ” RECOMB 2005 was hosted by the Broad Institute of MIT and Harvard, and Boston University’s Center for Advanced - nomic Technology, and was excellently organized by the Organizing Committee Co-chairs Jill Mesirov and Simon Kasif. This year, 217 papers were submitted, of which the Program Committee - lected 39 for presentation at the meeting and inclusion in this proceedings. Each submission was refereed by at least three members of the Program Committee. After the completion of the referees’ reports, an extensive Web-based discussion took place for making decisions. From RECOMB 2005, the Steering Committee decided to publish the proceedings as a volume of Lecture Notes in Bioinf- matics (LNBI) for which the founders of RECOMB are also the editors. The prominent volume number LNBI 3500 was assigned to this proceedings. The RECOMB conference series is closely associated with the Journal of Compu- tional Biology which traditionally publishes special issues devoted to presenting full versions of selected conference papers. The RECOMB Program Committee consistedof42members,aslistedonaseparatepage. Iwouldliketothank the RECOMB 2005 Program Committee members for their dedication and hard work.

Keywords

Annotation Microarray Resolution algorithms bioinformatics calculus cognition computational biology computational graph theory computational molecular biology genome haplotype data analysis pattern matching protein fold recognition protein interaction networks

Editors and affiliations

  • Satoru Miyano
    • 1
  • Jill Mesirov
    • 2
  • Simon Kasif
    • 3
  • Sorin Istrail
    • 4
  • Pavel A. Pevzner
    • 5
  • Michael Waterman
    • 6
  1. 1.Human Genome Center, Institute of Medical ScienceUniversity of TokyoMinato-ku, TokyoJapan
  2. 2.Broad Institute of MIT and HarvardCambridgeUSA
  3. 3.Computational Genomics Laboratory, Department of BioengineeringBoston UniversityBostonUSA
  4. 4.Center for Molecular Biology and Computer Sciecne DepartmentBrown UniversityProvidenceUSA
  5. 5.University of CaliforniaSan DiegoUSA
  6. 6.Department of Molecular and Computational BiologyUniversity of Southern CaliforniaLos AngelesUSA

Bibliographic information

  • DOI https://doi.org/10.1007/b135594
  • Copyright Information Springer-Verlag Berlin Heidelberg 2005
  • Publisher Name Springer, Berlin, Heidelberg
  • eBook Packages Computer Science
  • Print ISBN 978-3-540-25866-7
  • Online ISBN 978-3-540-31950-4
  • Series Print ISSN 0302-9743
  • Series Online ISSN 1611-3349
  • About this book

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