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Regulatory Genomics

RECOMB 2004 International Workshop, RRG 2004, San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers

  • Conference proceedings
  • © 2005

Overview

Editors:
  1. Eleazar Eskin

    1. Department of Human Genetics, University of California Los Angeles, Los Angeles

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    You can also search for this editor in PubMed   Google Scholar

  2. Christopher Workman

    1. Department of Bioengineering, University of California, San Diego, USA

    View editor publications

    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 3318)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: RRG 2004.

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Table of contents (10 papers)

  1. Front Matter

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  2. Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response

    • Manuel Middendorf, Anshul Kundaje, Chris Wiggins, Yoav Freund, Christina Leslie
    Pages 1-13

  3. Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome

    • Thomas Manke, Christoph Dieterich, Martin Vingron
    Pages 14-21

  4. Fishing for Proteins in the Pacific Northwest

    • William Krivan
    Pages 22-29

  5. PhyloGibbs: A Gibbs Sampler Incorporating Phylogenetic Information

    • Rahul Siddharthan, Erik van Nimwegen, Eric D. Siggia
    Pages 30-41

  6. Application of Kernel Method to Reveal Subtypes of TF Binding Motifs

    • Alexander Kel, Yury Tikunov, Nico Voss, Jürgen Borlak, Edgar Wingender
    Pages 42-51

  7. Learning Regulatory Network Models that Represent Regulator States and Roles

    • Keith Noto, Mark Craven
    Pages 52-64

  8. Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs

    • Chaya Ben-Zaken Zilberstein, Eleazar Eskin, Zohar Yakhini
    Pages 65-78

  9. Parameter Landscape Analysis for Common Motif Discovery Programs

    • Natalia Polouliakh, Michiko Konno, Paul Horton, Kenta Nakai
    Pages 79-87

  10. Inferring Cis-region Hierarchies from Patterns in Time-Course Gene Expression Data

    • Vladimir Filkov, Nameeta Shah
    Pages 88-97

  11. Modeling and Analysis of Heterogeneous Regulation in Biological Networks

    • Irit Gat-Viks, Amos Tanay, Ron Shamir
    Pages 98-113

  12. Back Matter

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  1. Regulatory Genomics

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Editors and Affiliations

  • Department of Human Genetics, University of California Los Angeles, Los Angeles

    Eleazar Eskin

  • Department of Bioengineering, University of California, San Diego, USA

    Christopher Workman

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