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Plant Proteomics

Methods and Protocols

  • Jesus V. Jorrin-Novo
  • Setsuko Komatsu
  • Wolfram Weckwerth
  • Stefanie Wienkoop

Part of the Methods in Molecular Biology book series (MIMB, volume 1072)

Table of contents

  1. Front Matter
    Pages i-xxi
  2. Introductory

    1. Front Matter
      Pages 1-1
    2. Jesus V. Jorrin-Novo
      Pages 3-13
    3. Wolfram Weckwerth, Stefanie Wienkoop, Wolfgang Hoehenwarter, Volker Egelhofer, Xiaoliang Sun
      Pages 15-27
    4. Luis Valledor, M. Cristina Romero-Rodríguez, Jesus V. Jorrin-Novo
      Pages 51-60
  3. Experimental

    1. Front Matter
      Pages 83-83
    2. Agnieszka Zienkiewicz, Juan David Rejón, Juan de Dios Alché, María Isabel Rodríguez-García, Antonio Jesús Castro
      Pages 85-91
    3. Raquel González Fernández, Inmaculada Redondo, Jesus V. Jorrin-Novo
      Pages 93-109
    4. Egisto Boschetti, Pier Giorgio Righetti
      Pages 111-129
    5. Sami Irar, Faiçal Brini, Khaled Masmoudi, Montserrat Pagès
      Pages 131-140
    6. Jenny Renaut, Céline Leclercq, Sébastien Planchon
      Pages 141-154
    7. María J. Martínez-Esteso, Juan Casado-Vela, Susana Sellés-Marchart, María A. Pedreño, Roque Bru-Martínez
      Pages 155-169
    8. Martina Vermachova, Zita Purkrtova, Jiri Santrucek, Pascale Jolivet, Thierry Chardot, Milan Kodicek
      Pages 185-198
    9. Manuela Peukert, Michael Becker, Andrea Matros, Hans-Peter Mock
      Pages 223-240
    10. Edgar Rodríguez-Negrete, Eduardo R. Bejarano, Araceli G. Castillo
      Pages 241-258
  4. Biological Systems

    1. Front Matter
      Pages 273-273
    2. Anja Rödiger, Birgit Agne, Katja Baerenfaller, Sacha Baginsky
      Pages 275-288
    3. Karlie A. Neilson, Iniga S. George, Samantha J. Emery, Sridevi Muralidharan, Mehdi Mirzaei, Paul A. Haynes
      Pages 289-302
    4. Zahed Hossain, Setsuko Komatsu
      Pages 315-331
    5. Sebastien C. Carpentier, Twan America
      Pages 333-346
  5. Descriptive Proteomics

    1. Front Matter
      Pages 359-359
    2. Ján A. Miernyk
      Pages 361-377
    3. M. Cristina Romero-Rodríguez, Ana M. Maldonado-Alconada, Luis Valledor, Jesus V. Jorrin-Novo
      Pages 379-389
    4. Thomas Dugé de Bernonville, Cécile Albenne, Matthieu Arlat, Laurent Hoffmann, Emmanuelle Lauber, Elisabeth Jamet
      Pages 391-405
    5. Ana B. Sabater-Jara, Lorena Almagro, Sarai Belchí-Navarro, María J. Martínez-Esteso, Sabry M. Youssef, Juan Casado-Vela et al.
      Pages 407-433
    6. Heidi Pertl-Obermeyer, Gerhard Obermeyer
      Pages 435-449
  6. Subcellular Proteomics

    1. Front Matter
      Pages 451-451
    2. Gonzalo M. Estavillo, Yves Verhertbruggen, Henrik V. Scheller, Barry J. Pogson, Joshua L. Heazlewood, Jun Ito
      Pages 453-467
    3. Takeshi Shiraya, Kentaro Kaneko, Toshiaki Mitsui
      Pages 469-480
    4. Daisuke Takahashi, Bin Li, Takato Nakayama, Yukio Kawamura, Matsuo Uemura
      Pages 481-498
    5. Shaobai Huang, Richard P. Jacoby, A. Harvey Millar, Nicolas L. Taylor
      Pages 499-525
    6. Harriet T. Parsons, Susana M. González Fernández-Niño, Joshua L. Heazlewood
      Pages 527-539
  7. Comparative Proteomics

    1. Front Matter
      Pages 553-553
    2. Katarína Klubicová, Namik M. Rashydov, Martin Hajduch
      Pages 555-561
    3. Yiming Wang, Sang Gon Kim, Jingni Wu, Sun Tae Kim, Kyu Young Kang
      Pages 563-572
    4. Harold Duban Ardila, Raquel González Fernández, Blanca Ligia Higuera, Inmaculada Redondo, Sixta Tulia Martínez
      Pages 573-591
  8. Posttranslational Proteomics

    1. Front Matter
      Pages 593-593
    2. Abasse Fares, Claude Nespoulous, Michel Rossignol, Jean-Benoît Peltier
      Pages 609-620
    3. Gerold J. M. Beckers, Wolfgang Hoehenwarter, Horst Röhrig, Uwe Conrath, Wolfram Weckwerth
      Pages 621-632

About this book

Introduction

Plant Proteomics: Methods and Protocols, Second Edition presents recent advances made in the field of proteomics and their application to plant biology and translational research. In recent years, improvements in techniques and protocols for high-throughput proteomics have been made at all workflow stages, from wet (sampling, tissue and cell fractionation, protein extraction, depletion, purification, separation, MS analysis, quantification) to dry lab (experimental design, algorithms for protein identification, bioinformatics tools for data analysis, databases, and repositories). Divided into nine convenient sections, chapters cover topics such as applications of gel-free, label- or label-free, imaging and targeted approaches to experimental model systems, crops and orphan species, as well as the study and analysis of PTMs, protein interactions, and specific families of proteins, and finally proteomics in translational research. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls.

 

Authoritative and easily accessible, Plant Proteomics: Methods and Protocols, Second Edition seeks to serve both professionals and novices looking to exploit the full potential of proteomics in plant biology research.

Keywords

bioinformatics electrophoresis interactomics plant biology proteomics systems biology

Editors and affiliations

  • Jesus V. Jorrin-Novo
    • 1
  • Setsuko Komatsu
    • 2
  • Wolfram Weckwerth
    • 3
  • Stefanie Wienkoop
    • 4
  1. 1.Dept of Biochem & Molecular BioUniversity of CordobaCordobaSpain
  2. 2.University of Tsukuba National Institute of Crop ScienceTsukubaJapan
  3. 3.Molecular Systems BiologyUniversity of ViennaViennaAustria
  4. 4.Dept. Molecular Systems BiologyUniversity of ViennaViennaAustria

Bibliographic information

  • DOI https://doi.org/10.1007/978-1-62703-631-3
  • Copyright Information Springer Science+Business Media, LLC 2014
  • Publisher Name Humana Press, Totowa, NJ
  • eBook Packages Springer Protocols
  • Print ISBN 978-1-62703-630-6
  • Online ISBN 978-1-62703-631-3
  • Series Print ISSN 1064-3745
  • Series Online ISSN 1940-6029
  • Buy this book on publisher's site
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