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Tiling Arrays

Methods and Protocols

  • Tin-Lap Lee
  • Alfred Chun Shui Luk

Part of the Methods in Molecular Biology book series (MIMB, volume 1067)

Table of contents

  1. Front Matter
    Pages i-xi
  2. Overview

    1. Front Matter
      Pages 1-1
  3. Transcriptional Regulation and Expression

    1. Front Matter
      Pages 21-21
    2. Takeshi Akama, Kazuaki Nakamura, Akito Tanoue, Koichi Suzuki
      Pages 23-34
    3. Diana Coman, Wilhelm Gruissem, Lars Hennig
      Pages 35-49
  4. Genetics and Epigenetics Regulation

    1. Front Matter
      Pages 77-77
    2. Hoi-Hung Cheung, Owen M. Rennert, Tin-Lap Lee
      Pages 79-86
    3. Suzanne F. C. Miller-Delaney, Sudipto Das, Raymond L. Stallings, David C. Henshall
      Pages 87-101
  5. Data Analysis

    1. Front Matter
      Pages 103-103
    2. Erdogan Taskesen, Bas Wouters, Ruud Delwel
      Pages 125-141
    3. Swati Sinha, Sainitin Donakonda, Satyanarayana MR Rao
      Pages 165-183
    4. René Wardenaar, Haiyin Liu, Vincent Colot, Maria Colomé-Tatché, Frank Johannes
      Pages 203-224
    5. Hoi-Hung Cheung, Janek Claus, Sumeeta Singh, Chandan Sastry, Owen M. Rennert, Wai-Yee Chan et al.
      Pages 225-233
  6. Back Matter
    Pages 235-236

About this book

Introduction

 In Tiling Arrays: Methods and Protocols,  expert researchers in the field detail many of the methods which are now commonly used to study tiling microarrays in genomic discovery . These include methods and applications for transcriptional regulation, expression, genetic and epigenetic regulation, as well as techniques and skills on tiling microarray data analysis. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls.

 

Authoritative and practical, Tiling Arrays: Methods and Protocols  seeks to provide scientists with a comprehensive and down to earth approach to maximize results.

Keywords

Methylated DNA immunoprecipitation (MeDIP) array-based approaches chromatin immunoprecipitation (ChIP-chip) epigenetic regulation expression gene expression genetic regulation microarray technology protein binding spatio-temporal patterns tiling microarray transcriptional regulation transcriptome transcriptome landscape discovery

Editors and affiliations

  • Tin-Lap Lee
    • 1
  • Alfred Chun Shui Luk
    • 2
  1. 1.Rm 624A Area 39The Chinese University of Hong Kong Reproduction, Development and EndocrinolHong KongChina, People's Republic
  2. 2.Rm 624A Area 39The Chinese University of Hong Kong Reproduction, Development and EndocrinolHong KongChina, People's Republic

Bibliographic information

  • DOI https://doi.org/10.1007/978-1-62703-607-8
  • Copyright Information Springer Science+Business Media New York 2013
  • Publisher Name Humana Press, Totowa, NJ
  • eBook Packages Springer Protocols
  • Print ISBN 978-1-62703-606-1
  • Online ISBN 978-1-62703-607-8
  • Series Print ISSN 1064-3745
  • Series Online ISSN 1940-6029
  • Buy this book on publisher's site
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