Brachypodium Genomics

Methods and Protocols

  • Gaurav Sablok
  • Hikmet Budak
  • Peter J. Ralph

Part of the Methods in Molecular Biology book series (MIMB, volume 1667)

Table of contents

  1. Front Matter
    Pages i-xi
  2. Concetta De Quattro, Erica Mica, Mario Enrico Pè, Edoardo Bertolini
    Pages 31-42
  3. Anuj Rana, Aneesh Karunakaran, Timothy L. Fitzgerald, Rosalie Sabburg, Elizabeth A. B. Aitken, Robert J. Henry et al.
    Pages 43-55
  4. Upinder S. Gill, Juan C. Serrani-Yarce, Hee-Kyung Lee, Kirankumar S. Mysore
    Pages 57-63
  5. Sonia Irigoyen, Renesh H. Bedre, Karen-Beth G. Scholthof, Kranthi K. Mandadi
    Pages 73-85
  6. Xin-Chun Mo, De-Quan Zhang, Can Kou, Ling-Juan Yin
    Pages 119-137
  7. Zhenguo Zhang, Gaurav Sablok
    Pages 139-148
  8. Salvatore Camiolo, Andrea Porceddu
    Pages 149-171
  9. Louise de Bang, Anna Maria Torp, Søren K. Rasmussen
    Pages 173-186
  10. Kun Yang, Xiaopeng Wen, Gaurav Sablok
    Pages 187-194
  11. Gaurav Sablok, Suresh B. Mudunuri, Korneliya Gudys, Kranthi Chennamsetti, G. P. Saradhi Varma, Miroslaw Kwasniewski
    Pages 195-201

About this book

Introduction

This volume presents protocols for Brachypodium genomics in numerous areas ranging from marker development, trait evolution, functional genomics, metabolomics, transcriptomics, genomics, and tilling. This book also explores techniques to study the widening genetic base of Brachypodium that will help researchers better understand the model plant using NGS technologies. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Cutting-edge and comprehensive, Brachypodium Genomics: Methods and Protocols is a valuable resource for bench-oriented molecular biologists and computational biologists working towards further evolving this field.

Keywords

imprinting genes cross-linking genes functional genomics metabolomics transcriptomics TILLING NGS technologies

Editors and affiliations

  • Gaurav Sablok
    • 1
  • Hikmet Budak
    • 2
  • Peter J. Ralph
    • 3
  1. 1.Department of Biodiversity and Molecular EcologyFondazione Edmund Mach IASMATrentinoItaly
  2. 2.Sabanci UniversityIstanbulTurkey
  3. 3.Climate Change Cluster (C3)University of Technology SydneySydneyAustralia

Bibliographic information

  • DOI https://doi.org/10.1007/978-1-4939-7278-4
  • Copyright Information Springer Science+Business Media LLC 2018
  • Publisher Name Humana Press, New York, NY
  • eBook Packages Springer Protocols
  • Print ISBN 978-1-4939-7276-0
  • Online ISBN 978-1-4939-7278-4
  • Series Print ISSN 1064-3745
  • Series Online ISSN 1940-6029
  • About this book
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