Algorithms in Bioinformatics

12th International Workshop, WABI 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings

  • Ben Raphael
  • Jijun Tang
Conference proceedings WABI 2012

Part of the Lecture Notes in Computer Science book series (LNCS, volume 7534)

Also part of the Lecture Notes in Bioinformatics book sub series (LNBI, volume 7534)

Table of contents

  1. Front Matter
  2. Matthias Bernt, Kun-Mao Chao, Jyun-Wei Kao, Martin Middendorf, Eric Tannier
    Pages 1-13
  3. Daniel G. Brown, Jakub Truszkowski
    Pages 14-29
  4. Constantinos Tsirogiannis, Brody Sandel, Dimitris Cheliotis
    Pages 30-43
  5. Daniel G. Brown, Daniel Dexter
    Pages 44-56
  6. Bjarni V. Halldórsson, Dima Blokh, Roded Sharan
    Pages 69-80
  7. Akshay Deepak, David Fernández-Baca, Michelle M. McMahon
    Pages 81-92
  8. Manuel Lafond, Krister M. Swenson, Nadia El-Mabrouk
    Pages 106-122
  9. Thi Hau Nguyen, Jean-Philippe Doyon, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Vincent Ranwez, Vincent Berry
    Pages 123-134
  10. Nimrod Milo, Shay Zakov, Erez Katzenelson, Eitan Bachmat, Yefim Dinitz, Michal Ziv-Ukelson
    Pages 135-148
  11. Anirban Bhar, Martin Haubrock, Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Edgar Wingender
    Pages 165-177
  12. Yen-Yi Lin, Phuong Dao, Faraz Hach, Marzieh Bakhshi, Fan Mo, Anna Lapuk et al.
    Pages 178-189
  13. Brad Shutters, Sudheer Vakati, David Fernández-Baca
    Pages 190-200
  14. Anthony J. Cox, Tobias Jakobi, Giovanna Rosone, Ole B. Schulz-Trieglaff
    Pages 214-224
  15. Alexander Bowe, Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya
    Pages 225-235
  16. Nikolay Vyahhi, Alex Pyshkin, Son Pham, Pavel A. Pevzner
    Pages 249-261
  17. Natalie E. Castellana, Andrey Lushnikov, Piotr Rotkiewicz, Natasha Sefcovic, Pavel A. Pevzner, Adam Godzik et al.
    Pages 262-273
  18. Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Babak Alipanahi Ramandi, Ming Li
    Pages 274-287
  19. Geet Duggal, Rob Patro, Emre Sefer, Hao Wang, Darya Filippova, Samir Khuller et al.
    Pages 288-300
  20. Song Gao, Denis Bertrand, Niranjan Nagarajan
    Pages 314-325
  21. Markus J. Bauer, Anthony J. Cox, Giovanna Rosone, Marinella Sciortino
    Pages 326-337
  22. Shay Houri, Roded Sharan
    Pages 338-345
  23. Yi Shi, Xiaoping Liao, Xinhua Zhang, Guohui Lin, Dale Schuurmans
    Pages 346-364
  24. Phillip E. C. Compeau
    Pages 365-377
  25. Poly H. da Silva, Marília D. V. Braga, Raphael Machado, Simone Dantas
    Pages 378-390
  26. Birte Kehr, Knut Reinert, Aaron E. Darling
    Pages 391-403
  27. Olga Tanaseichuk, James Borneman, Tao Jiang
    Pages 404-416
  28. Antoine Thomas, Aïda Ouangraoua, Jean-Stéphane Varré
    Pages 417-429
  29. Leo van Iersel, Steven Kelk, Nela Lekić, Celine Scornavacca
    Pages 430-440
  30. Niko Välimäki, Simon J. Puglisi
    Pages 441-452
  31. Back Matter

About these proceedings


This book constitutes the refereed proceedings of the 12th International Workshop on Algorithms in Bioinformatics, WABI 2012, held in Ljubljana, Slovenia, in September 2012. WABI 2012 is one of six workshops which, along with the European Symposium on Algorithms (ESA), constitute the ALGO annual meeting and focuses on algorithmic advances in bioinformatics, computational biology, and systems biology with a particular emphasis on discrete algorithms and machine-learning methods that address important problems in molecular biology. The 35 full papers presented were carefully reviewed and selected from 92 submissions. The papers include algorithms for a variety of biological problems including phylogeny, DNA and RNA sequencing and analysis, protein structure, and others.


algorithms de Bruijn graphs graph reconstruction phylogenetic trees protein networks

Editors and affiliations

  • Ben Raphael
    • 1
  • Jijun Tang
    • 2
  1. 1.Department of Computer ScienceBrown UniversityProvidenceUSA
  2. 2.Department of Computer Science and EngineeringUniversity of South CarolinaColumbiaUSA

Bibliographic information

  • DOI
  • Copyright Information Springer-Verlag Berlin Heidelberg 2012
  • Publisher Name Springer, Berlin, Heidelberg
  • eBook Packages Computer Science Computer Science (R0)
  • Print ISBN 978-3-642-33121-3
  • Online ISBN 978-3-642-33122-0
  • Series Print ISSN 0302-9743
  • Series Online ISSN 1611-3349
  • Buy this book on publisher's site
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