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Comparative Genomics

15th International Workshop, RECOMB CG 2017, Barcelona, Spain, October 4-6, 2017, Proceedings

  • Joao Meidanis
  • Luay Nakhleh
Conference proceedings RECOMB-CG 2017

Part of the Lecture Notes in Computer Science book series (LNCS, volume 10562)

Also part of the Lecture Notes in Bioinformatics book sub series (LNBI, volume 10562)

Table of contents

  1. Front Matter
    Pages I-VIII
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  2. The Similarity Distribution of Paralogous Gene Pairs Created by Recurrent Alternation of Polyploidization and Fractionation
    Yue Zhang, David Sankoff
    Pages 1-13
  3. A Tractable Variant of the Single Cut or Join Distance with Duplicated Genes
    Pedro Feijão, Aniket Mane, Cedric Chauve
    Pages 14-30
  4. Generation and Comparative Genomics of Synthetic Dengue Viruses
    Eli Goz, Yael Tsalenchuck, Rony Oren Benaroya, Shimshi Atar, Tahel Altman, Justin Julander et al.
    Pages 31-52
  5. ASTRAL-III: Increased Scalability and Impacts of Contracting Low Support Branches
    Chao Zhang, Erfan Sayyari, Siavash Mirarab
    Pages 53-75
  6. Algorithms for Computing the Family-Free Genomic Similarity Under DCJ
    Diego P. Rubert, Gabriel L. Medeiros, Edna A. Hoshino, Marília D. V. Braga, Jens Stoye, Fábio V. Martinez
    Pages 76-100
  7. New Algorithms for the Genomic Duplication Problem
    Jarosław Paszek, Paweł Górecki
    Pages 101-115
  8. TreeShrink: Efficient Detection of Outlier Tree Leaves
    Uyen Mai, Siavash Mirarab
    Pages 116-140
  9. Rearrangement Scenarios Guided by Chromatin Structure
    Sylvain Pulicani, Pijus Simonaitis, Eric Rivals, Krister M. Swenson
    Pages 141-155
  10. A Unified ILP Framework for Genome Median, Halving, and Aliquoting Problems Under DCJ
    Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
    Pages 156-178
  11. Orientation of Ordered Scaffolds
    Sergey Aganezov, Max A. Alekseyev
    Pages 179-196
  12. Finding Teams in Graphs and Its Application to Spatial Gene Cluster Discovery
    Tizian Schulz, Jens Stoye, Daniel Doerr
    Pages 197-212
  13. Inferring Local Genealogies on Closely Related Genomes
    Ryan A. Leo Elworth, Luay Nakhleh
    Pages 213-231
  14. Enhancing Searches for Optimal Trees Using SIESTA
    Pranjal Vachaspati, Tandy Warnow
    Pages 232-255
  15. On the Rank-Distance Median of 3 Permutations
    Leonid Chindelevitch, João Meidanis
    Pages 256-276
  16. Statistical Consistency of Coalescent-Based Species Tree Methods Under Models of Missing Data
    Michael Nute, Jed Chou
    Pages 277-297
  17. Fast Heuristics for Resolving Weakly Supported Branches Using Duplication, Transfers, and Losses
    Han Lai, Maureen Stolzer, Dannie Durand
    Pages 298-320
  18. Back Matter
    Pages 321-321
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About these proceedings

Introduction

This book constitutes the proceedings of the 15th International Workshop Comparative Genomics, RECOMB-CG 2017, held in Barcelona, Spain, in October 2017. The 16 full papers presented were carefully reviewed and selected from 32 submissions. The papers report original research in all areas of Comparative Genomics.

Keywords

genome evolution genome rearrangements genome variation, diversity and dynamics phylogenomics comparative tools for genome assembly population genomics comparative epigenomics paleogenomics cancer evolution genomics gene identification and/or annotation

Editors and affiliations

  • Joao Meidanis
    • 1
  • Luay Nakhleh
    • 2
  1. 1.University of CampinasCampinasBrazil
  2. 2.Rice UniversityHoustonUSA

Bibliographic information

  • DOI https://doi.org/10.1007/978-3-319-67979-2
  • Copyright Information Springer International Publishing AG 2017
  • Publisher Name Springer, Cham
  • eBook Packages Computer Science
  • Print ISBN 978-3-319-67978-5
  • Online ISBN 978-3-319-67979-2
  • Series Print ISSN 0302-9743
  • Series Online ISSN 1611-3349
  • Buy this book on publisher's site
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