Fungal Genomics

Methods and Protocols

  • Ronald P. de Vries
  • Adrian Tsang
  • Igor V. Grigoriev

Part of the Methods in Molecular Biology book series (MIMB, volume 1775)

Table of contents

  1. Front Matter
    Pages i-xi
  2. Ronald P. de Vries, Igor V. Grigoriev, Adrian Tsang
    Pages 1-7
  3. Technical Aspects of Genomics

    1. Front Matter
      Pages 9-9
    2. Annie Bellemare, Tricia John, Sandrine Marqueteau
      Pages 11-20
    3. Laure Fauchery, Stéphane Uroz, Marc Buée, Annegret Kohler
      Pages 21-35
    4. Yuko Yoshinaga, Christopher Daum, Guifen He, Ronan O’Malley
      Pages 37-52
    5. Xuefeng Peng, Candice L. Swift, Michael K. Theodorou, Michelle A. O’Malley
      Pages 53-67
    6. Vasanth R. Singan, Rita C. Kuo, Cindy Chen
      Pages 83-92
    7. Marcos Rafael Di Falco
      Pages 93-106
    8. Young-Mo Kim, Heino M. Heyman
      Pages 107-118
    9. Jakob B. Hoof, Christina S. Nødvig, Uffe H. Mortensen
      Pages 119-132
    10. Ronald P. de Vries, Ronnie Lubbers, Aleksandrina Patyshakuliyeva, Ad Wiebenga, Isabelle Benoit-Gelber
      Pages 133-137
  4. Data Processing and Analysis

    1. Front Matter
      Pages 139-139
    2. Alicia Clum
      Pages 141-153
    3. Stephen J. Mondo, Rita C. Kuo, Vasanth R. Singan
      Pages 155-170
    4. Sajeet Haridas, Asaf Salamov, Igor V. Grigoriev
      Pages 171-184
    5. Erin McDonnell, Kimchi Strasser, Adrian Tsang
      Pages 185-208
    6. Joel Martin, Wendy Schackwitz, Anna Lipzen
      Pages 229-239
    7. Aileen R. Ferraro, Zachary A. Lewis
      Pages 241-250
    8. Robert Riley, Laszlo Nagy
      Pages 251-266
    9. Letian Song, Sherry Wu, Adrian Tsang
      Pages 267-275
  5. Back Matter
    Pages 289-291

About this book


This volume details protocols covering  nearly all aspects of fungal genomics. New and updated chapters guide the reader through experimental genomics, biotechnologies, and the analysis and processing of data. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

 Authoritative and practical, Fungal Genomics : Methods and Protocols, Second Edition aims to ensure successful results in the further study of this vital field.


DNA preparation Genome sequencing ChIP-seq analysis ChIP-ChIP Mass spectrometry

Editors and affiliations

  • Ronald P. de Vries
    • 1
  • Adrian Tsang
    • 2
  • Igor V. Grigoriev
    • 3
  1. 1.Fungal Physiology, Westerdijk FungalBiodiversity InstituteUtrechtThe Netherlands
  2. 2.Centre for Structural and Functional GenomicsConcordia UniversityMontrealCanada
  3. 3.US Department of EnergyJoint Genome InstituteWalnut CreekUSA

Bibliographic information

  • DOI
  • Copyright Information Springer Science+Business Media, LLC, part of Springer Nature 2018
  • Publisher Name Humana Press, New York, NY
  • eBook Packages Springer Protocols
  • Print ISBN 978-1-4939-7803-8
  • Online ISBN 978-1-4939-7804-5
  • Series Print ISSN 1064-3745
  • Series Online ISSN 1940-6029
  • Buy this book on publisher's site
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