Software Tools and Algorithms for Biological Systems

  • Hamid R. Arabnia
  • Quoc-Nam Tran

Part of the Advances in Experimental Medicine and Biology book series (AEMB, volume 696)

Table of contents

  1. Front Matter
    Pages i-xli
  2. Computational Methods for Microarray, Gene Expression Analysis, and Gene Regulatory Networks

    1. Front Matter
      Pages 1-1
    2. F. Battke, A. Herbig, A. Wentzel, Ø. M. Jakobsen, M. Bonin, D. A. Hodgson et al.
      Pages 3-15
    3. Daniel Pasailă, Andrei Sucilă, Irina Mohorianu, Ştefan Panţiru, Liviu Ciortuz
      Pages 17-25
    4. Marcin Czajkowski, Marek Krȩtowski
      Pages 27-35
    5. Vijender Chaitankar, Chaoyang Zhang, Preetam Ghosh, Ping Gong, Edward J. Perkins, Youping Deng
      Pages 37-43
    6. Félix F. González-Navarro, Lluís A. Belanche-Muñoz
      Pages 45-55
    7. Aurelian Radu, Gabriela Hristescu, Pavel Katsel, Vahram Haroutunian, Kenneth L. Davis
      Pages 67-74
    8. A. K. Mishra, D. K. Lobiyal
      Pages 75-82
    9. Debahuti Mishra, Rajashree Dash, Amiya Kumar Rath, Milu Acharya
      Pages 91-100
    10. Hieu Trung Huynh, Jung-Ja Kim, Yonggwan Won
      Pages 135-143
    11. Marie Vendettuoli, Erin Doyle, Heike Hofmann
      Pages 145-153
  3. Bioinformatics Databases, Data Mining, and Pattern Discovery Techniques

    1. Front Matter
      Pages 155-155
    2. B. Strader, K. E. Schubert, M. Quintana, E. Gomez, J. Curnutt, P. Boston
      Pages 157-170
    3. Adhistya Erna Permanasari, Dayang Rohaya Awang Rambli, P. Dhanapal Durai Dominic
      Pages 171-179
    4. Courtney D. Corley, Rada Mihalcea, Armin R. Mikler, Antonio P. Sanfilippo
      Pages 181-190
    5. Dongsheng Che, Qi Liu, Khaled Rasheed, Xiuping Tao
      Pages 191-199
    6. Ruben-Dario Pinzon-Morales, Katherine-Andrea Baquero-Duarte, Alvaro-Angel Orozco-Gutierrez, Victor-Hugo Grisales-Palacio
      Pages 201-209
    7. Gregor Stiglic, Juan J. Rodriguez, Peter Kokol
      Pages 211-221
  4. Protein Classification and Structure Prediction, and Computational Structural Biology

    1. Front Matter
      Pages 231-231
    2. José Antonio Martínez, José Jesús Fernández
      Pages 233-242
    3. Andrzej Dominik, Zbigniew Walczak, Jacek Wojciechowski
      Pages 243-253
    4. Chunming Tang, Ling Ma, Dongbin Xu
      Pages 255-262
    5. Nazar Zaki, Wassim El-Hajj, Hesham M. Kamel, Fadi Sibai
      Pages 263-270
    6. Francisco Torrens, Gloria Castellano
      Pages 271-278
    7. Nikola Štambuk, Paško Konjevoda
      Pages 279-284
  5. Comparative Sequence, Genome Analysis, Genome Assembly, and Genome Scale Computational Methods

    1. Front Matter
      Pages 285-285
    2. Ankit Agrawal, Alok Choudhary, Xiaoqiu Huang
      Pages 297-306
    3. Giovanni Montana, Maurice Berk, Tim Ebbels
      Pages 307-315
    4. Aya Sedky Adly, Amal Elsayed Aboutabl, M. Shaarawy Ibrahim
      Pages 317-325
    5. A. Benis, M. Courtine
      Pages 327-334
    6. C. Reta, J. A. Gonzalez, R. Diaz, J. S. Guichard
      Pages 345-353
  6. Experimental Medicine and Analysis Tools

    1. Front Matter
      Pages 355-355
    2. Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
      Pages 357-366
    3. Marco Picone, Sebastian Steger, Konstantinos Exarchos, Marco De Fazio, Yorgos Goletsis, Dimitrios I. Fotiadis et al.
      Pages 367-375
    4. Sanjukta Hota, Philip Crooke, John Hotchkiss
      Pages 401-410
  7. Computational Methods for Filtering, Noise Cancellation, and Signal and Image Processing

    1. Front Matter
      Pages 411-411
    2. Filiz Bunyak, Adel Hafiane, Kannappan Palaniappan
      Pages 413-424
    3. Shareef M. Dabdoub, Sheryl S. Justice, William C. Ray
      Pages 425-432

About this book


“Software Tools and Algorithms for Biological Systems" is composed of a collection of papers received in response to an announcement that was widely distributed to academicians and practitioners in the broad area of computational biology and software tools. Also, selected authors of accepted papers of BIOCOMP’09 proceedings (International Conference on Bioinformatics and Computational Biology: July 13-16, 2009; Las Vegas, Nevada, USA) were invited to submit the extended versions of their papers for evaluation.

Editors and affiliations

  • Hamid R. Arabnia
    • 1
  • Quoc-Nam Tran
    • 2
  1. 1.Dept. Computer ScienceUniversity of GeorgiaAthensUSA
  2. 2., Department of Computer ScienceLamar UniversityBeaumontUSA

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