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Knowledge Discovery in Life Science Literature

PAKDD 2006 International Workshop, KDLL 2006, Singapore, April 9, 2006. Proceedings

  • Eric G. Bremer
  • Jörg Hakenberg
  • Eui-Hong (Sam) Han
  • Daniel Berrar
  • Werner Dubitzky
Conference proceedings KDLL 2006

Part of the Lecture Notes in Computer Science book series (LNCS, volume 3886)

Also part of the Lecture Notes in Bioinformatics book sub series (LNBI, volume 3886)

Table of contents

  1. Front Matter
    PDF
  2. Alignment of Biomedical Ontologies Using Life Science Literature
    He Tan, Vaida Jakonienė, Patrick Lambrix, Johan Aberg, Nahid Shahmehri
    Pages 1-17
  3. Improving Literature Preselection by Searching for Images
    Brigitte Mathiak, Andreas Kupfer, Richard Münch, Claudia Täubner, Silke Eckstein
    Pages 18-28
  4. Headwords and Suffixes in Biomedical Names
    Manabu Torii, Hongfang Liu
    Pages 29-41
  5. A Tree Kernel-Based Method for Protein-Protein Interaction Mining from Biomedical Literature
    Jae-Hong Eom, Sun Kim, Seong-Hwan Kim, Byoung-Tak Zhang
    Pages 42-52
  6. Recognizing Biomedical Named Entities Using SVMs: Improving Recognition Performance with a Minimal Set of Features
    Nazife Dimililer, Ekrem Varoğlu
    Pages 53-67
  7. Investigation of the Changes of Temporal Topic Profiles in Biomedical Literature
    Wei Huang, Shouyang Wang, Lean Yu, Hongtao Ren
    Pages 68-77
  8. Extracting Protein-Protein Interactions in Biomedical Literature Using an Existing Syntactic Parser
    Hyunchul Jang, Jaesoo Lim, Joon-Ho Lim, Soo-Jun Park, Seon-Hee Park, Kyu-Chul Lee
    Pages 78-90
  9. Extracting Named Entities Using Support Vector Machines
    Yu-Chieh Wu, Teng-Kai Fan, Yue-Shi Lee, Show-Jane Yen
    Pages 91-103
  10. Extracting Initial and Reliable Negative Documents to Enhance Classification Performance
    Hui Wang, Wanli Zuo
    Pages 104-111
  11. Detecting Invalid Dictionary Entries for Biomedical Text Mining
    Hironori Takeuchi, Issei Yoshida, Yohei Ikawa, Kazuo Iida, Yoko Fukui
    Pages 112-122
  12. Automated Identification of Protein Classification and Detection of Annotation Errors in Protein Databases Using Statistical Approaches
    Kang Ning, Hon Nian Chua
    Pages 123-138
  13. GetItFull – A Tool for Downloading and Pre-processing Full-Text Journal Articles
    Jeyakumar Natarajan, Cliff Haines, Brian Berglund, Catherine DeSesa, Catherine J. Hack, Werner Dubitzky et al.
    Pages 139-145
  14. Back Matter
    PDF

About these proceedings

Keywords

algorithms bioinformatics biomedical data analysis biomedical informatics classification cognition data management data mining database databases image identification knowledge discovery medical informatics ontology proving

Editors and affiliations

  • Eric G. Bremer
    • 1
  • Jörg Hakenberg
    • 2
  • Eui-Hong (Sam) Han
    • 3
  • Daniel Berrar
    • 4
  • Werner Dubitzky
    • 5
  1. 1.Brain Tumor Research Program, Children’s Memorial Hospital, and Feinberg School of MedicineNorthwestern UniversityChicagoUSA
  2. 2.Computer Science Department, Knowledge Management in BioinformaticsHumbold-Universität zu BerlinBerlinGermany
  3. 3.iXmatch Inc.MinneapolisUSA
  4. 4.School of Biomedical SciencesUniversity of UlsterColeraineNorthern Ireland, UK
  5. 5.School of Biomedial Sciences, Bioinformatics Research GroupUniversity of UlsterColeraineNorthern Ireland, UK

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