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Biologia

, Volume 74, Issue 2, pp 173–185 | Cite as

Molecular characterization of a diverse Iranian table grapevine germplasm using REMAP markers: population structure, linkage disequilibrium and association mapping of berry yield and quality traits

  • Mitra Razi
  • Reza Darvishzadeh
  • Mohamed Esmaeli Amiri
  • Hamed Doulati-Banehd
  • Pedro Martínez-GómezEmail author
Original Article
  • 32 Downloads

Abstract

In this study forty-five table grape Iranian cultivars were assessed by using 42 retrotransposon-microsatellite amplified polymorphism (REMAP) markers also analyzing population structure, linkage disequilibrium and genomic regions associated with most important berry yield and quality traits. The phenotypic results showed the great diversity of the Iranian germplasm and their suitability for genetic and association studies. The studied grape cultivars were divided into three populations. A significant level of LD was observed in 1.22% of the retrotransposon marker pairs (P < 0.01). Mixed linear model procedure revealed that 40 loci had significant association with investigated traits. Finally, 27 markers showed significant association with regions controlling the studied berry yield and quality traits. These REMAP loci identified in this study associated to phenotypic traits may be applied in marker-assisted selection in table grape breeding programs.

Keywords

Vitis vinífera Retrotransposon Genetics Genomics Breeding 

Notes

Acknowledgments

This research has been partially supported by project “Breeding stone fruit species assisted by molecular tools” from the Seneca Foundation of the Region of Murcia (19879/GERM/15). Authors thank the Support of the University of Zanjan (Iran) in the stay of Mitra Razi at CEBAS-CSIC of Murcia (Spain).

Compliance with ethical standards

Conflict of interests

No potential conflict of interest was reported by the authors.

Supplementary material

11756_2018_158_MOESM1_ESM.doc (39 kb)
Supplementary Table 1 Name, sequence and number of alleles for assayed retrotransposon and ISSR primers, conditions for the PCR reactions and primer comibation assayed. (DOC 39 kb)

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Copyright information

© Institute of Molecular Biology, Slovak Academy of Sciences 2018

Authors and Affiliations

  • Mitra Razi
    • 1
  • Reza Darvishzadeh
    • 2
    • 3
  • Mohamed Esmaeli Amiri
    • 1
  • Hamed Doulati-Banehd
    • 4
  • Pedro Martínez-Gómez
    • 5
    Email author
  1. 1.Department of HorticultureUniversity of ZanjanZanjanIran
  2. 2.Department of Plant Breeding and BiotechnologyUrmia UniversityUrmiaIran
  3. 3.Institute of BiotechnologyUrmia UniversityUrmiaIran
  4. 4.Horticulture Crops Research Department, West Azerbaijan Agricultural and Natural Resources Research and Education CenterAREEOUrmiaIran
  5. 5.Plant Breeding DepartmentCEBAS-CSICMurciaSpain

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