Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains

Table 4 Summary of the genome statistics of the 26 C. sakazakii strains evaluated in this study^a

Attribute	Value	Range	% of Total
Genome size (kb)	4393	4052-4716	100.0
DNA coding (kb)	3898	3779-4160	88.3
Number of DNA G + C bases (kb)	2510	2438-2664	56.9
DNA scaffolds	46.2	23–100	100.0
Total genes	4207	4090-4541	100.0
Protein coding genes	4055	3937-4383	96.4
RNA genes	151.6	142–162	3.6
Pseudo genes^d	100.6	73–157	- ^c
Genes in internal clusters	887.1	829–962	21.0
Genes assigned to COGs	3,151^b	3101-3251	74.9
Genes with Pfam domain	3877	3595-3879	87.4
Genes with signal peptides	413.5	403–436	9.8
Genes with transmembrane proteins	994.6	978–1038	23.7
CRISPR repeats^d	2.6	2–4	-^c

^aData was obtained from the JGI IMG pipeline. Note: Genome statistics for each individual strain is shown in Additional file 1: Table S1
^bThe number of genes assigned to COGs by NCBI was 3902 compared to the value (3151 genes) assigned by the JGI IMG pipeline
^cNCBI pipeline did not have the % total for the CRISPR repeats and pseudo genes
^dData was obtained from the NCBI, https://www.ncbi.nlm.nih.gov/nuccore