Fig. 7 | BMC Biology

Fig. 7

From: Assessment of assumptions underlying models of prokaryotic pangenome evolution

Fig. 7

Fits of two-class model to three-class simulated dataset. a The mean genome intersections for a three-class simulated dataset and a two-class model fit. The slow, intermediate, and fast classes in the simulation contained 2250, 1500, and 750 genes, with λ values of 0.005, 0.1, and 2, respectively. The two-class fit goodness of fit is R2 = 0.99991 with 3730 slow genes and 749 fast genes, with respective λ values of 0.04 and 1.98. b Gene commonality for the simulated dataset and model prediction. The model prediction for gene commonality is extracted from the mean genome intersections of a, using Eq. 3

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