Table 3 Significant SNPs associated with seven wool traits

From: Genome-wide association studies detects candidate genes for wool traits by re-sequencing in Chinese fine-wool sheep

Trait Chr position (bp) P-value Candidate genes Distance (bp)
FD 2 127,805,728 2.80E-08 UBE2E3 within
14 42,678,119 1.52E-08 RHPN2 4985
FDCV 3 74,006,775 3.19E-08 NRXN1 within
11 6,520,617 5.25E-08 ANKFN1 within
FDSD 12 38,844,498 6.60E-08 TNFSF4 −38,182
19 53,142,776 2.31E-08 LOC101117971 within
19 53,142,801 3.23E-08 LOC101117971 within
SL 1 211,531,257 2.35E-08 NLGN1 within
1 205,410,405 3.64E-08 USP13 within
4 50,182,043 8.08E-09 LOC101108907 18,447
9 82,560,062 1.09E-09 GEM 760
9 82,565,963 3.11E-08 GEM 6661
9 82,560,051 3.28E-08 GEM 749
9 82,565,750 4.22E-08 GEM 6448
17 68,092,867 1.02E-08 EWSR1 within
17 68,313,142 1.37E-08 NF2 within
24 29,022,455 2.74E-08 CALN1 16,070
GFW 2 89,156,912 7.96E-09 LOC101103702 within
2 20,077,571 9.50E-09  
2 20,343,753 1.64E-08  
2 22,673,981 7.32E-08 LOC101123603 −32,038
3 9,591,330 1.63E-11 MVB12B within
3 9,591,125 3.41E-08 MVB12B within
3 84,111,139 6.05E-08  
11 48,617,494 6.61E-08 PITPNC1 within
24 30,292,869 4.70E-08 LOC105604756 within
25 37,386,229 1.56E-08 NRG3 within
CWR 1 78,731,004 4.92E-08 LOC101117031 within
8 50,472,213 5.28E-08  
10 32,755,294 1.44E-08  
SS 1 96,961,763 7.87E-12 LOC101112943 within
1 84,208,941 4.05E-09 VAV3 within
2 182,741,643 1.01E-08 LOC105610635 within
2 180,636,507 1.11E-08  
3 108,977,664 1.55E-08  
3 108,977,663 2.31E-08  
3 108,977,665 2.79E-08  
7 57,497,429 4.6E-08 LOC105607291 within
7 57,544,088 6.95E-08 LOC105607291 within
12 65,659,038 5.67E-10  
12 65,676,686 8.32E-10  
12 65,676,784 2.76E-09  
12 65,666,086 3.99E-09  
12 65,665,315 7.77E-08  
13 65,826,724 5.95E-08 SRC 28,588
15 21,954,509 6.51E-10 BCO2 within
15 51,815,926 3.38E-08 PGM2L1 within
15 51,845,450 3.71E-08 PGM2L1 within
15 21,953,940 5.87E-08 BCO2 within
15 21,955,321 6.14E-08 BCO2 within
15 51,810,577 6.29E-08 PGM2L1 within
18 59,961,387 1.41E-08 PAPOLA − 6293
18 36,751,894 4.77E-08 82,558
18 36,747,715 7.16E-08  
18 36,789,189 7.83E-08  
22 37,530,124 1.16E-08 FAM204A 12,749
22 21,182,419 6.28E-08 LOC105604253 15,932
  1. FD mean fibre diameter, FDCV fibre diameter coefficient of variation, FDSD fibre diameter standard deviation, SL staple length, GFW greasy fleece weight, CWR clean wool rate, SS staple strength