Table 2 The basic chloroplast genome information of six Atractylodes species

From: Chloroplast genome variation and phylogenetic relationships of Atractylodes species

Category for genes Group of genes Name of genes
Photosynthesis related genes Rubisco rbcL
PhotosystemI psaA,psaB,psaC,psaI,psaJ
Assembly/stability of photosystemI *ycf3,ycf4
PhotosystemII psbA,psbB,psbC,psbD,psbE,psbF,psbH,psbI,psbJ,psbK,psbL,psbM,psbN,psbT,psbZ
ATP synthase atpA, atpB, atpE, *atpF, atpH, atpI
cytochrome b/f compelx petA, *petB, *petD, petG, petL, petN
cytochrome c synthesis ccsA
NADPH dehydrogenase *ndhA, *ndhB, ndhC, ndhD, ndhE, ndhF,ndhG, ndhH, ndhI, ndhJ, ndhK
Transcription and translation related genes transcription rpoA, rpoB, *rpoC1, rpoC2
ribosomal proteins rps2, rps3, rps4, rps7, rps8, rps11, *rps12, rps14,rps15, *rps16, rps18, rps19,*rpl2, rpl14, *rpl16, rpl20, rpl22, rpl23, rpl32, rpl33,rpl36
translation initiation factor infA
RNA genes ribosomal RNA rrn5, rrn4.5, rrn16, rrn23
transfer RNA *trnA-UGC, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, *trnG-UCC, trnG-GCC, trnH-GUG, trnI-CAU, *trnI-GAU,*trnK-UUU, trnL-CAA, *trnL-UAA, trnL-UAG, trnfM-CAUI,trnM-CAU, trnN-GUU, trnP-UGG, trnQ-UUG,trnR-ACG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU,trnT-UGU, trnV-GAC, *trnV-UAC, trnW-CCA, trnY-GUA
Other genes RNA processing matK
carbon metabolism cemA
fatty acid synthesis accD
proteolysis *clpP
Genes of unknown function conserved reading frames ycf1, ycf2
  1. Intron-containing genes are marked by asterisks (*)