Skip to main content

Table 1 Tissue specific SlP450 having over-represented promoter motifs along with their probable biological role

From: Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

Sr. No Over represented Motif name Tomato Tissue Type Biological function Solyc Id Universal name
1 AC motif and MYB1LEPR motif Leaf specific P450 genes These motifs are present in bean phenylalanine ammonia-lyase (PAL) gene and together play crucial role to co-ordinate regulation of phenylpropanoide metabolism [41, 42, 43] Solyc04g071800
Solyc11g006590
Solyc04g011690
SlCYP92B7
SlCYP71AT7
SlCYP736A
3 AGL motif Root specific P450 genes Arabidopsis AGL19 and AGL18 promoter motif showed specific expression in root meristem and central cylinder cell in mature root and also in petals and siliques [44, 45, 46, 47]. Solyc12g042480
Solyc02g084570
Solyc03g120060
Solyc10g017510
Solyc05g047680
SlCYP736A4
SlCYP84A2
SlCYP734A8
SlCYP71BE8
SlCYP78A77
4 AT-box motif Buds specific P450 genes AT rich binding sequence characterized from promoter of tomato rbcs-3A gene. This motif meditate regulation of light harvesting gene complex [48, 49, 50]. Solyc04g078900
Solyc12g006460
Solyc07g043460
SlCYP707A8
SlCYP88B1
SlCYP72A18
5 Auxin responsive element Root specific P450 genes Soybean GH3 gene has three auxin responsive element which are important in auxin mediated gene expression [51]. Solyc12g042480
Solyc02g084570
Solyc03g120060
Solyc10g017510
Solyc05g047680
SlCYP736A4
SlCYP84A2
SlCYP734A8
SlCYP71BE8
SlCYP78A77
6 HSE heat shock element Root specific P450 genes HSE are present in the heat shock proteins of Apx1 gene and involved in oxidative stress defense. Arabidopsis APX1 gene showed induced expression under oxidative stress [52, 53]. Solyc12g042480
Solyc02g084570
Solyc03g120060
Solyc10g017510
Solyc05g047680
SlCYP736A4
SlCYP84A2
SlCYP734A8
SlCYP71BE8
SlCYP78A77
7 TCP transcription factor Petal specific P450 genes TCP transcription factor involved in growth, development and defense mechanism also induces biosynthesis of Brassinosteroid (BR), Jasmonic acid (JA) and flavonoids might be involved in regulation of floral tissues developing genes in tomato plant. In Arabidopsis TCP14 and TCP15 motifs are involved in regulation of floral tissues and leaf blade development [54, 55, 56]. Solyc04g050620
Solyc07g062500
Solyc06g051750
Solyc08g079280
Solyc04g051190
Solyc08g080380
Solyc02g080330
Solyc10g080870
Solyc09g059240
Solyc11g065770
SlCYP736A1
SlCYP72A14
SlCYP90A5
SlCYP706C2
SlCYP97A29
SlCYP80E6
SlCYP77B11
SlCYP96A48
SlCYP82U1
SlCYP94A25