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Bingo from SciTouch LLC: chemistry cartridge for Oracle database

Open Access
Free software session presentation

Keywords

Molecular Weight Relational Database Automatic Generation Database Server Chemical Information 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

Bingo is a data cartridge for Oracle database that provides the industry's next-generation, fast, scalable, and efficient storage and searching solution for chemical information.

Bingo seamlessly integrates the chemistry into Oracle databases. Its extensible indexing is designed to enable scientists to store, index, and search chemical moieties alongside numbers and text within one underlying relational database server.

For molecule structure searching, Bingo supports 2D and 3D exact and substructure searches, as well as similarity, tautomer, Markush, formula, molecular weight, and flexmatch searches. For reaction searches, Bingo supports reaction substructure search (RSS) with optional automatic generation of atom-to-atom mapping. All of these techniques are available through extensions to the SQL and PL/SQL syntax.

Bingo also has features not present in other cartridges, for example, advanced tautomer search, resonance substructure search, and fast updating of the index when adding new structures.

The presentation itself you can download from our site: http://opensource.scitouch.net/downloads/bingo-cic.pdf

Copyright information

© Dmitry et al; licensee BioMed Central Ltd. 2010

This article is published under license to BioMed Central Ltd.

Authors and Affiliations

  • Dmitry Pavlov
    • 1
  • Mikhail Rybalkin
    • 1
  • Boris Karulin
    • 1
  1. 1.SciTouch LLCSt. PetersburgRussia

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