Regulation of cell proliferation and apoptosis by growth hormone during zebrafish auditory hair cell regeneration
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KeywordsGrowth Hormone Next Generation Sequencing Ingenuity Pathway Analysis Growth Hormone Receptor Hair Cell Loss
In order to develop treatments or preventive measures for auditory hair cell loss, an understanding of both the process of auditory hair cell regeneration and factors that influence this process, is needed. Our previous microarray analysis showed that growth hormone (GH) was significantly upregulated during zebrafish auditory hair cell regeneration, coupled with cell proliferation [1, 2]. We further tested the effects of GH on zebrafish auditory hair cell regeneration by injecting GH after sound exposure and found that GH can efficiently promote post-trauma auditory hair cell regeneration, which may be achieved through stimulating proliferation and suppressing apoptosis . In the current study, we used Next Generation Sequencing (NGS) to examine the possible GH pathways involved in zebrafish auditory hair cell regeneration.
Materials and methods
Groups of 20 zebrafish were exposed to a 150 Hz tone at 179 dB re 1 μPa RMS for 40 h. Following acoustic exposure, the fish were injected with either phosphate buffer, GH, or a GH antagonist. In addition, one baseline group received no acoustic stimulus or injection. RNA was extracted from the inner ear tissues and cDNA was synthesized for NGS. Data was generated using the Illumina Pipeline version SCS 2.8.0 and sequence alignment was done using TopHat. The aligned reads were then annotated using Cufflink and the differential expression of transcripts was performed by Cuffdiff. Only the statistically significant reads were used in further analysis and pathways were examined using Ingenuity Pathway Analysis (IPA).
Results and conclusions
We thank Cofactor Genomics for performing the NGS. We also thank Abdallah Eteleeb and Dr. Robert Flight of the Univ. of Louisville for their assistance with NGS analysis, and Yajie Wang and Elizabeth Malloy for RNA sample preparation. This project was supported by grants from the National Center for Research Resources (5 P20 RR016481-12) and the National Institute of General Medical Sciences (8 P20 GM103436-12) from the National Institutes of Health.
This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.