Characterization of marine ferromanganese crust from the Pacific using residues of selective chemical leaching: identification of fossil magnetotactic bacteria with FE-SEM and rock magnetic methods
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KeywordsFerromanganese crust Magnetotactic bacteria Terrestrial Extraterrestrial Eolian Cosmic spherule Titanomagnetite Chemical leaching Rock magnetism
alternating gradient magnetometer
energy-dispersive X-ray spectrometry
field emission-scanning electron microscope
first-order reversal curve
isothermal remanent magnetization
superconducting quantum interference device
Hydrogenetic ferromanganese crusts (hereafter referred to as “crusts”) on Pacific seamounts are formed by precipitation of iron–manganese oxides from seawater on volcanic and biogenic substrate rocks. Crusts grow continuously with very slow growth rates of between 1 and 10 mm/m.y., and they can thus potentially be used as records of the Neogene paleoceanographic and paleoclimatic conditions (e.g., Usui et al. 2007). Chemical compositions of ferromanganese crusts can be obtained through observations with optical and electron microscopes and conducting chemical mapping on a polished surface. However, these methods cannot always provide adequate information, as minor particles are hidden in the matrix, which are mainly composed of vernadite (chemical formula (Mn4+, Fe3+, Ca, Na)(O,OH)2·n(H2O); Anthony et al. 2018), and observation of the surface of large materials, such as fossils, is also limited. With these limitations in mind, this study presents a novel selective dissolution technique that targets vernadite and provides a more direct means for examining the materials preserved within the ferromanganese crusts.
The leaching technique is also important for use in exposing and identifying magnetic minerals hidden in the matrix of crusts and for removing largely paramagnetic components in the matrix that hinder conducting certain rock magnetic measurements. Thin slices of ferromanganese crust have been measured using a SQUID Rock Magnetometer (e.g., Joshima and Usui 1998; Noguchi et al. 2017a; Yuan et al. 2017), which provides submillimeter- to millimeter-scale magnetostratigraphy, and a scanning SQUID microscope (e.g., Oda et al. 2011; Noguchi et al. 2017b), thereby providing an alternative dating method of crusts, and results have shown that the crust has stable remanent magnetization. Noguchi et al. (2017b) reported rock magnetic results including magnetic hysteresis properties from a crust in the northwestern Pacific that suggest three phases of magnetic minerals with mean coercivities of associated phases of 18–25 mT, 31–32 mT, and 930–1200 mT, respectively (Supplementary material: Noguchi et al. 2017b). In this study, we applied a leaching method to extract and report magnetite particles that are assumed to have originated from magnetotactic bacteria. Rock magnetic experiments were also conducted to confirm the presence of biogenic magnetite, which may correspond to the second phase reported in Noguchi et al. (2017b).
Geological setting, samples, and chemical leaching
An age model has already been developed by Nishi et al. (2017) using 10Be/9Be methods on the crust sample MC10CB07. The results show a constant growth rate of ~ 2.0 mm/m.y. from 7.7 Ma to the present (Table 2 and Figure 6: Nishi et al. 2017). However, the growth rate from the middle Miocene to 7.7 Ma was 3.5 mm/m.y., and it has been deduced that the rate prior to the middle Miocene was higher than 20 mm/m.y (Nishi et al. 2017).
Sample preparations and measurements
Chip samples with thicknesses of 3 mm were prepared from a slab sample of the crust (optical photograph image; Fig. 2a), and 33 chips were measured using an X-ray powder diffractometer (XRD) (RIGAKU MultiFlex) at Kochi University with Cu Kα radiation operated at 40 kV and 16 mA at a speed of 8°/min. X-ray fluorescence (XRF) analyses of another slab sample (optical photograph image; Fig. 2b) of the crust were also conducted using a micro-XRF analyzer (HORIBA XGT-7200 V) at Kochi University operated at 50 kV and 1 A with 100 µm beam diameter.
We applied a chemical leaching method for extracting detrital grains contained in the crust. To remove the main matrix material vernadite, we used basically the third part of the sequential chemical leaching method proposed by Koschinsky and Halbach (1995). The method is to employ oxalic acid buffered with ammonium oxalate (pH 3.0; 100 mL) on the crust sample (0.5 g) crushed down to < 300 µm. The mixture was stirred at 25 °C, and sieved while washing with distilled water. Experiments were conducted on materials obtained from the first and second layers but excluded materials from the third layer as these had been phosphatized. The sampling and chemical leaching experiments were conducted on four units that were classified based on visual observations, optical microscopy, and XRD analysis (Fig. 2c).
Rock magnetic measurements were conducted to characterize magnetic minerals contained in the crust. A fragment of a sample was taken from the upper part of Unit 1 (0–10 mm; Sample 1) where possible magnetotactic bacteria were found (see next section) and divided into three for the following rock magnetic experiments. High-temperature susceptibility was measured in air using a Kappabridge KLY-4S (AGICO Co. Ltd.) with high-temperature furnace (CS-3) up to 700 °C with a heating rate of 10 °C/min. Thermal demagnetization experiment was conducted after imparting Isothermal Remanent Magnetization (IRM) at 2.5 T, 0.3 T, and 0.1 T in X-, Y-, and Z- directions in sequence, according to the method proposed by Lowrie (1990). Furthermore, an alternating Gradient Field Magnetometer (Micromag 2900 AGM; Lake Shore Cryotronics, Inc.) was used to conduct magnetic hysteresis experiments, FORC (First Order Reversal Curve) measurements and backfield application to saturation IRM (1.4 T). Analyses of FORC data were conducted using FORCinel software (Harrison and Feinberg 2008) and employed VARIFORC functions for smoothing (Egli 2013). Backfield curves were analyzed using MAX Unmix software (Maxbauer et al. 2016) after subtracting each value from the saturation IRM and dividing by two.
XRD analyzes of chip samples showed the presence of quartz, plagioclase, calcite, apatite and vernadite (Fig. 2a). Vernadite, an iron–manganese oxide mineral, was found in all three layers, which indicates that the crust is hydrogenetic in origin. Quartz and plagioclase were found mostly in the second layer, calcite was found mostly in the third layer, and apatite was found in the third layer and at the bottom of the second layer.
A map of the elements measured by XRF (Fig. 2b) suggests the following features. There were no elements of detrital origin, such as Si, Al, and Ti, detected in the first layer. There was a significant occurrence of Mn and Ni in the first layer compared to the second layer. The second layer contained more elements of detrital origin (Si, Al, and Ti) but less Mn, which can be interpreted as being the dilution effect by the detrital materials, and the higher amounts of Fe in the first layer are also consistent with this. The third layer had higher amounts of P and Ca, which is consistent with phosphatization of the layer.
The residues of chemical leaching were found to be composed of various kinds of terrestrial and extraterrestrial materials, such as augite, olivine, magnetite, microfossils, cosmic spherules, and eolian dusts (Additional file 1: Fig. S1). It was difficult to identify these in chip samples using XRD analysis. The larger-sized grains (> 24 μm) were not rounded suggesting a proximal origin. These materials are considered to have a volcanogenic origin relating to weathering, erosion, and transportation from surrounding seamounts, and are very rare in Unit 1 but rich in Unit 2.
The slight presence of phosphatization observed with XRD at the boundary between Unit 3 and Unit 4 could be interpreted as being related to an increase in biogenic materials. Biogenic materials are rich in Units 3 and 4 but poor in Units 1 and 2, which indicates that Units 3 and 4 were formed when biogenic productivity was high at the time of corresponding crust formation.
To facilitate observation of small-sized and/or rare magnetic particles, magnetic concentration was conducted for residues taken from Unit 1 (0–10 mm) using a Sm–Co hand magnet. The magnetic concentration was conducted only for Unit 1, because the sample is black and dense, and fraction of small grain size (< 6 µm) is most abundant. The residues were diluted with a distilled water, and dispersed using a stirrer. The hand magnet was put on a plastic tray and gently moved in the container to attract magnetic particles beneath the tray. The tray was lifted up together with the magnet, the bottom surface of the tray was washed in another container with a distilled water after removing the magnet. The process was repeated many times, and the material was collected after evaporating water. For Units 1 through 4, magnetite grains with grain sizes of hundreds of micro-meters to several tens of nano-meters were observed. It was remarkable to find the presence of chains of prism-shaped, uniformly sized, magnetic particles measuring several tens of nano-meters, which are considered to be magnetosomes originating from magnetotactic bacteria (Fig. 3a). Grains presumed to be titanomagnetites (Fig. 3c) and cosmic spherules (Fig. 3f) were also found in the crust. In order to understand the origin of these particles, further study is needed (e.g., presence of Ni for cosmic spherules).
Contribution of chemical leaching to paleoenvironment studies
Kim et al. (2006) interpreted the difference between layers 1 and 2 (recognized in crusts taken from a latitudinal band similar to the studied crust MC10CF07) as being related to the position of the ITCZ (Intertropical Convergence Zone). Although Hein et al. (1993) also observed layer 1 and layer 2 in crusts from the northwestern Pacific, they suggested that the difference was not related to the ITCZ. Use of oxalic acid prevents dissolution of calcium carbonate and also enables the extraction of foraminifera, coccoliths, and icthyoliths. Chemical leaching that dissolved the matrix material vernadite enabled us to identify details of the depositional environment recorded by the crust, which would not have been possible if chemical leaching had not been used on bulk samples. The leaching method also enabled us to conduct a detailed biostratigraphy and Sr chronology for crusts using icthyolith (e.g., Gleason et al. 2002).
Paleolatitude of sites
van Hinsbergen et al. (2015) provided a tool for paleoclimate studies to backtrack the paleolatitude into the past for any location on the globe. Paleolatitudes of the site using the software are calculated as 11.3 ± 1.9°N, 10.4 ± 1.8°N, and 10.8 ± 2.6°N for 0, 10, and 20 Ma, respectively. These paleolatitude estimates may not be reliable because these are transferred from the paleolatitudes of the continents through plate circuit assuming that the hotspots are not moving. However, hotspot motion has now been recognized (e.g., Tarduno et al. 2003). Although reliable paleolatitudes of the Pacific could be obtained from volcanic rocks, exposed volcanic rocks are limited. On the other hand, the paleolatitudes obtained from the sediment suffers from inclination shallowing (e.g., Tarduno 1990). Thus, further work is needed on reliable estimates of the Pacific paleolatitudes.
Identification of magnetites formed by magnetotactic bacteria
Magnetic particles formed by magnetotactic bacteria are composed of magnetite (Fe3O4) or greigite (Fe3S4) crystals ranging in size between ~ 20 nm and ~ 100 nm (e.g., Bazylinski et al. 1994; Yamagishi et al. 2016) and have characteristic morphologies that are cuboctahedra-shaped, elongated prism-shaped, or bullet-shaped, which would have been difficult to form via simple inorganic reactions (e.g., Chang et al. 2014; Yamagishi et al. 2016). One of the morphologies found in the magnetic extracts of the crust in this study (Fig. 3a) is prism-shaped and is considered equivalent to those formed in living magnetotactic bacteria cells. Living magnetotactic bacteria are generally found in ponds, rivers, and oceans. Although fossil magnetotactic bacteria have previously been observed in sediment cores in oceans and lakes (e.g., Lin et al. 2017), this is the first report of magnetotactic bacteria from a marine ferromanganese crust.
Analyses of backfield curves of three sister samples used for FORC measurements show similar components (Additional file 4: Fig. S4). Major contribution is component 3 with mean coercivity (Bh) of 32–36 mT and narrow dispersion parameter (DP) of 1.4–1.5 mT. Component 4 has Bh = 100–110 mT, which is much smaller compared with the highest coercivity (930–1200 mT) reported by Noguchi et al. (2017b). This may suggest much more eolian input for the site (latitude ~ 22°N) of Noguchi et al. (2017b) than for the studied site (latitude ~ 10°N).
The presence of non-interacting, single-domain magnetite originating from magnetotactic bacteria supports previous evidence that submillimeter-scale magnetostratigraphies can be successfully created using stable remanent magnetization (e.g., Joshima and Usui 1998; Oda et al. 2011; Noguchi et al. 2017a, b; Yuan et al. 2017). Although the question as to why and how magnetotactic bacteria exist in the crust has not been answered, it is possible to assume that magnetotactic bacteria died, were captured by the matrix, and were then locked-in the crust within the magnetic field direction over a reasonably short geological time period, which thus enables their determination by magnetostratigraphy. However, it is important to consider the environmental conditions enabling magnetotactic bacteria to survive on the surface of crust. Therefore, an alternative explanation could be that the magnetotactic bacteria were transported from the deep sea by deep sea currents after death or while living and then deposited together with the matrix.
The study demonstrated a new method for extracting minerals from ferromanganese crusts, which otherwise would be buried and hidden within the vernadite matrix. A selective chemical leaching method that prevented dissolution of calcium carbonate was applied on a crust sample MC10CB07 from the MC10 Seamount near Micronesia. The leaching method enables identification of various materials/particles that provide rich information and the opportunity to understand details of environmental history recorded in the crust. The leaching process was also effective in revealing magnetic minerals and enabled the discovery of chained magnetite grains, which are considered to be from fossil magnetotactic bacteria. The presence of magnetite and uniaxial, non-interacting, single-domain, magnetic particles supports the hypothesis that these are fossil magnetotactic bacteria. Alghouth it remains unclear how the fossil magnetotactic bacteria were incorporated into the materials in the crust, it is considered that they could have been formed on the crust or transported from the deep sea sediments via deep sea currents.
Hirokuni Oda designed the rock magnetic experiment, interpreted and wrote most of the manuscript; Yoshio Nakasato conducted chemical leaching and observations with optical and electron microscopes and analyzed with XRD/EDS/XRF, Akira Usui conducted sampling and provided the description of the ferromanganese crust. All authors read and approved the final manuscript.
The authors thank all the crew and shipboard participants of the SOPAC cruises within Micronesia sea area for supporting us during on-site sampling. HO thanks Ayako Katayama and Emiko Miyamura for producing the figures and a part of the measurements. HO appreciates general discussions held with Andrew Roberts, David Heslop, Xiang Zhao, Pengxiang Hu, Richard Harrison, and Adrian Muxworthy. The authors are grateful to the valuable suggestions given by the editor (John Tarduno) and the reviewers (Joshua Feinburg and an anonymous) for the manuscript.
The authors declare that they have no competing interests.
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This work is partially supported by funding from AIST/METI, Japan relating to “Development of machine learning approaches in magnetic recording and climate research” to HO.
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