Molecular tools to create new strains for mosquito sexing and vector control
Vector control programs based on population reduction by matings with mass-released sterile insects require the release of only male mosquitoes, as the release of females, even if sterile, would increase the number of biting and potentially disease-transmitting individuals. While small-scale releases demonstrated the applicability of sterile males releases to control the yellow fever mosquito Aedes aegypti, large-scale programs for mosquitoes are currently prevented by the lack of efficient sexing systems in any of the vector species.
Different approaches of sexing are pursued, including classical genetic and mechanical methods of sex separation. Another strategy is the development of transgenic sexing systems. Such systems already exist in other insect pests. Genome modification tools could be used to apply similar strategies to mosquitoes. Three major tools to modify mosquito genomes are currently used: transposable elements, site-specific recombination systems, and genome editing via TALEN or CRISPR/Cas. All three can serve the purpose of developing sexing systems and vector control strains in mosquitoes in two ways: first, via their use in basic research. A better understanding of mosquito biology, including the sex-determining pathways and the involved genes can greatly facilitate the development of sexing strains. Moreover, basic research can help to identify other regulatory elements and genes potentially useful for the construction of transgenic sexing systems. Second, these genome modification tools can be used to apply the gained knowledge to build and test mosquito sexing strains for vector control.
Keywordsmosquitoes vector control sexing systems genome modification transposable elements site-specific recombination genome editing CRISPR/Cas TALEN
CRISPR associated protein
Complex Object Parametric Analyzer and Sorter
clustered regularly interspaced short palindromic repeats
enhanced green fluorescent protein
genetic sexing strain
head involution defective
inverted terminal repeat
non-homologous end joining
protospacer adjacent motif
polymerase chain reaction
recombinase-mediated cassette exchange
single guide RNA
sterile insect technique
transcription activator-like effector
transcription activator-like effector nuclease
transgenic embryonic sexing strain
transactivating CRISPR RNA
temperature sensitive lethal
transgenic sexing strain
The control of pest insects via the sterile Insect technique (SIT) has been performed successfully for several decades. The most prominent examples are the eradication of the tsetse fly Glossina austeni in Zanzibar , of the screwworm Cochliomyia hominivorax from Mexico, the US, and Central America , and the successful suppressive or preventive control programs for the Mediterranean fruit fly Ceratitis capitata in North and Central America [3, 4, 5, 6, 7]. The SIT offers a highly species-specific and therefore environment-friendly approach for insect pest control. The SIT is based on the mass release of males of the target species sterilized by irradiation. Matings of these sterile males with wild type females in the field will not produce offspring, thereby decreasing the population size of the next generation. Via repeated releases, the population can be reduced to a manageable size. The release of only male insects is beneficial for the SIT as well as similar control strategies based on male sterility. It increases the efficacy of the program and thereby reduces the costs . First trials to establish control programs based on transgenic sterility have also been implemented for the yellow fever mosquito Aedes aegypti. Several small-scale releases were performed with a self-limiting strain of Ae. aegypti in Grand Cayman [9, 10] and Brazil [11, 12]. The strain carries a transgenic construct that kills most of the offspring of the released males during late larval or pupal development . All releases showed a significant reduction of the Ae. aegypti populations in the release areas.
While male-only releases are desirable for agricultural pests, they are a prerequisite for all control programs involving the mass release of insect vectors. In insect vectors, only the females bite and can thereby transmit diseases. Thus, the release of females, even if sterile, would increase the number of biting and potentially disease-transmitting individuals. Elimination of female mosquitoes for the small-scale releases of Ae. aegypti (0.5 to 1.5 million males per week) was performed mechanically, making use of the size difference between male and female pupae for separation. Mechanical sexing as it is currently performed, however, is not only labor intensive, time consuming and costly. It is also not 100% efficient, with a female contamination of 0.02% or more [11, 14]. Moreover, this strategy is not applicable to anophelines as the pupal size difference is mostly not pronounced enough for successful separation . Therefore, efficient sexing systems are urgently needed for the major vector species. Only then large-scale control programs based on the release of sterile males, where up to one billion males per week are produced, can be developed. Such sexing systems would be desirable for Ae. aegypti, Ae. albopictus, and Ae. polynesiensis, which are the major vectors of yellow fever, dengue, chikungunya and Zika virus, and for the malaria vectors of the Anopheles gambiae complex and An. stephensi.
Several approaches exist besides mechanical or physical sex separation in mosquitoes . One strategy is classical genetic mutagenesis using chemicals or irradiation and screening for the desired phenotype. An example of such a genetic sexing strain (GSS) in mosquitoes is the An. arabiensis, ANO IPCL1 strain, where a mutation confers dieldrin resistance to males, and kills the susceptible females when eggs or larvae are treated with the insecticide . GSS also exist for An. gambiae  and An. albimanus . The development of a GSS using classical genetic approaches can take a long time, however, and cannot be easily transferred to another species, as the induction of mutations via chemicals or irradiation results in random mutagenesis. Therefore, the underlying molecular basis of the mutant phenotype is often not known.
Transgenic strategies offer multiple approaches to create sexing systems in mosquitoes. Besides their usefulness in the construction of sexing strains, transgenic technologies have become an important factor in basic research, e.g. by using transposable elements to uncover gene function in insertional mutagenesis studies or to identify regulatory elements in enhancer trap experiments. Furthermore, genome editing technologies have recently been used to help elucidate the sex-determining pathway in Ae. aegypti . This basic research on mosquito biology creates a strong basis for the development of sexing strains, as it uncovers potential candidate genes and regulatory elements that can be used to construct a transgenic sexing system (TSS). TSSs already exist in several insect pests, relying on different strategies. In Anopheles and Aedes mosquitoes, fluorescent protein marker expression was linked to the sex. Mechanical sorting of the male from female larvae was then achieved based on the absence or presence of fluorescence by using a flow cytometer, the Complex Object Parametric Analyzer and Sorter (COPAS) [21, 22, 23]. In a different approach, transgenic embryonic sexing systems (TESS) were built for several agricultural pests like the Mediterranean fruit fly Ceratitis capitata , the Caribbean fruit fly Anastrepha suspensa , and the Australian Sheep Blow fly Lucilia cuprina . They are based on the conditional elimination of female insects during early embryonic development to obtain only male insects for release. Genome modification tools offer the possibility to transfer such successful sexing strategies to important vectors and adapt them for each species. Three major tools to modify mosquito genomes are available at the moment and are functional in four important vectors from the genera Aedes and Anopheles: transposable elements, site-specific recombination systems, and genome editing via TALEN or CRISPR/Cas. Here, we review these three major technologies for genome modification in insects, specifically focusing on their application and achievements in mosquitoes with respect to their potential to create sexing strains for vector control.
Germline transformation of mosquitoes using class II transposable elements
Transposons are mobile genetic elements found in almost all life forms and can make up a large fraction of an organism’s genome. The first transposon used to transform an insect genome was the P element in Drosophila melanogaster in the 1980s . Expectations to have found a universal tool for insect transgenesis were not confirmed, however, when researchers essentially failed to apply it to other insects. The positive effect of this failure was an intense search for other transposons suitable for germline transformation of insects since the late 1990s. This led to the discovery of nine different transposable elements, Hermes, Herves, Hobo, Hopper, Minos, Mos1, the P element, piggyBac, and Tn5.
Transposon vector systems used in mosquitoes
Jasinskiene et al. 1998 
Allen et al. 2001 
Catteruccia et al. 2000 
Coates et al. 1998 
Kokoza et al. 2001 
Grossman et al. 2001 
Nolan et al. 2002 
Perera et al. 2002 
Rodrigues et al. 2006 
Labbe et al. 2010 
Rowan et al. 2004 
Mobility of transposable elements in the mosquito genome
The mobility of transposable elements is an important feature to uncover the function of genetic elements in enhancer-trapping and gene-tagging experiments as well as in genome-wide mutagenesis studies. In the Ae. aegypti genome, however, transposable elements show a very limited mobility or are completely immobile. Although the piggyBac transposase in Aedes integrates in a precise transposition event, leading to the canonical duplication of the TTAA recognition sequence , it does not remobilize [29, 30]. The results obtained from a variety of experiments indicates the involvement of species-specific effects in Ae. aegypti. While piggyBac remobilizes in plasmid-based assays in the Ae. aegypti cell line Aag2, it is immobile when it is stably integrated in that cell line . Esnault et al. discovered that local context effects involving the surrounding 500-1000 bp of the genomic integration site influence the mobility of the piggyBac transposon in D. melanogaster . This led to the reasoning that such context effects might also be responsible for the immobility of piggyBac in Aedes. However, a piggyBac transposon transferred from the Ae. aegypti genome into D. melanogaster together with the flanking 1000 bp of the Ae. aegypti genomic integration site remobilizes with high efficiency in the D. melanogaster genome . This result contradicts the local context hypothesis. As the piggyBac construct and flanking sequences were isolated from the Ae. aegypti genome by PCR, essentially blank DNA (lacking all chromatin information) was transformed into D. melanogaster. Therefore, the more likely candidates for the silencing effect of transposable elements in Ae. aegypti would be genetic or epigenetic effects.
To our knowledge, the mobility of genetic elements has not been thoroughly tested in any other mosquito of the genus Aedes. The only other experiment addressing piggyBac mobility in Aedes is based on inter plasmid assays in Ae. albopictus embryos , where the element was mobile. However, taking into account the results in Ae. aegypti, inter plasmid assays do not necessarily allow conclusions on the behavior of genomic piggyBac integrations.
Germline remobilization experiments with other insect class II transposons such as Hermes and Mos1 display similar behavior within the Ae. aegypti germline. Hermes shows a very limited remobilization in Ae. aegypti under different experimental conditions. This includes the embryonic microinjection of a helper plasmid encoding the transposase under the control of the D. melanogaster hsp70 promoter , as well as crossing the transgenic line carrying the Hermes construct to a jumpstarter line . The jumpstarter line permanently expresses the transposase in the testis. Also, the remobilization of a Mos1-based gene vector in Ae. aegypti was extremely rare (1 in 14,000 G1) . The reduced Hermes mobility seemed to be an Aedes-specific phenomenon, as it remobilizes within the D. melanogaster germline at a rate of approximately 0.03 jumps per element per generation . In contrast, low Mos1 mobility was also observed in D. melanogaster with a remobilization rate of less than 1% .
Within other mosquito genera, the inability of transposons to remobilize has been observed for the Minos element in Anopheles stephensi. Here, germline remobilization assays did not yield any positive events in more than 35,000 screened G1, although evidence of somatic mobility was recovered. These somatic events, however, occurred to a large extent with a non-canonical mechanism .
In contrast to the general immobility of class II transposable elements in Ae. aegypti, and of Minos in An. stephensi, the piggyBac transposon vector system is highly mobile in An. stephensi and An. gambiae, where it is exploited as a tool for enhancer trap studies [39, 40].
Hyperactive versions of transposases
Transformation efficiency with transposable elements in general is low, reaching rarely more than 10 to 15% and being often much lower. Their broad applicability in insects and mammalian cells, nevertheless turns them into important tools for transgenesis. It would therefore be desirable to increase transposition efficiency. This lead to different efforts to enhance the activity of transposases, starting by codon-optimizing the insect piggyBac transposase for mammalian usage [41, 42].
By screening for hyperactive mutants of the insect piggyBac transposase in yeast, a hyperactive version (IPB7) was created. To further increase expression of the transposase for use in mammalian cells, the combination of the best hyperactive mutations was transferred into the mammalian codon-optimized enzyme, which was named hyPBase . Wright et al. tested the insect codon mutant IPB7 in Ae. aegypti. Despite a 9-fold increased activity of the mutant in mammalian cells , IPB7 had no effect in Ae. aegypti inter-plasmid assays compared to the wild type T. ni piggyBac transposase . Moreover, the enzyme caused a high degree of sterility in transformed individuals, that was also observed in a parallel experiment in D. melanogaster. Investigation of sterile Drosophila and Aedes females showed that sterility was caused by a severe atrophy in the ovaries of females injected with the mutant helper plasmid alone or in combination with a donor . Interestingly, the same hyPBase tested again in D. melanogaster, C. capitata, and T. castaneum, did not cause such high sterility rates . Thus, hyperactive piggyBac versions could be evaluated again for effective genetic engineering and enhanced mosquito transformation.
Additionally, mutated versions of Mos1 were tested in Ae. aegypti. These mutants were based on the mutations generated in a related transposon Himar1 . In combination with perfectly matched 5’ and 3’ ITRs, two of the Mos1 mutants showed a more than 3-fold increase in transposition activity, while at the same time significantly improving the integrity of the transposition process .
Advantages and disadvantages of mosquito transgenesis with transposons
Commonly used transposable elements use short genomic recognition sequences for integration, such as TA for mariner or TTAA for the piggyBac transposase. Due to the high frequency of such short recognition sequences in the genome, the integration is essentially random, which can lead to insertional mutagenesis effects. Scientists make use of the random integration to uncover new regulatory elements within genomic regions and to identify gene function in enhancer trap and insertional mutagenesis experiments, respectively. For this purpose, scientists favor transposons with strong remobilization properties to be able to hit many different genomic locations in one experiment. Due to the nearly complete immobility of transposable elements in the Ae. aegypti genome, this important tool for genome wide functional studies is not available in the yellow fever mosquito. In contrast, it has been successfully applied to the Asian and African malaria mosquito [39, 40].
If the purpose of the transformation is the creation of transgenic mosquitoes, e.g. sexing strains, then insertional mutagenesis is an unwanted side effect, as it can be deleterious for the fitness of the transgenic insects. Depending on the affected gene, the consequences may range from mild phenotypic effects to lethality . Extensive fitness tests are necessary to assess the biological quality and mating competitiveness of transgenic strains first at a laboratory scale, and then in (semi-) field cages and in a mass rearing setup and small-scale releases. In some cases, the created transgenic strains do not show obvious defects in biological quality under normal lab rearing conditions [48, 49]. It has been shown, however, that small negative effects on strain fitness based on the transgene integration can remain hidden under optimal rearing conditions, but become measurable when the strains are put under stress, such as limited food resources . Thus, even if transgenic strains show suitable fitness in the lab, they might not perform well enough under mass rearing conditions, which can involve a certain level of stress, such as density stress and limited food resources. Moreover, fitness loads might only be noticeable in the homozygous state, while they remain obscured as long as one intact allele is present (compare [51, 52] and [48, 49, 53]). Besides these direct effects of insertional mutagenesis, an indirect fitness effect can result from deleterious genes located close the integration site. Due to selection for the transgene in each generation and low frequency of recombination between the transgene locus and a deleterious gene located nearby, the latter enriches in the population, thus decreasing fitness. Together, these effects will affect the suitability of the strains for pest control applications.
The random integration into the genome can also lead to genomic position effects caused by regulatory elements like enhancers and silencers, or to position effect variegation due to nearby heterochromatic regions. There are several examples where the same transgene construct integrated at different genomic positions shows varying degrees of expression [54, 55, 56, 57, 58]. Therefore, it is impossible to perform an unbiased comparison of the function and efficacy of different transgene constructs located at different genomic positions.
With the overall low transformation frequency achieved with transposable elements, it can be time-consuming to obtain a transgenic strain with the appropriate transgenic characteristics and sufficient biological quality.
Use of transposable elements to create sexing strains in mosquitoes
Fluorescent proteins are commonly used in insects as markers to identify transgenic individuals. The male- (or sex-) specific expression of fluorescent markers can be exploited for sex separation. This strategy has been pursued for Aedes and Anopheles species. Sex separation is e.g. achieved by mechanical sorting with the COPAS. Using the beta2-tubulin (β2-tub) promoter to express the fluorescent marker protein allows reliable sorting for marked males from non-marked females in Ae. aegypti  and Anopheles stephensi . Using the An. gambiae dsx promoter to drive EGFP permits early larval separation due to the higher expression of EGFP in the midgut in male L1 larvae compared to females . Importantly, the mechanical sorting by COPAS does not significantly affect the viability and competitiveness of sorted males [21, 23]. Transgenic strains with insertions of the marker on the Y chromosome can replace the use of sex-specific promoters. Including a recombination sequence such as attP, lox, or FRT for site-specific integration, allows additional modification of the Y chromosome. Such strains are available for An. gambiae  and Ae. aegypti (Haecker et al, unpublished data).
A different strategy for sexing is pursued by the so-called X shredder. It makes use of an endonuclease, I-PpoI, that specifically cuts X-chromosomal ribosomal DNA sequences. Tissue-specific expression of I-PpoI in the testes of An. gambiae under the control of β2-tub 5’ and 3’ regulatory sequences results in a strong bias for Y gametes, as X-chromosomes are shredded during gametogenesis. However, it also resulted in male sterility in crosses of heterozygous males with wild-type females due to the transfer of the stable I-PpoI protein into gametes where it shreds the X chromosome of the oocyte upon fertilization . Reducing the half-life time of the I-PpoI protein abolished the sterility effect .
Site-specific modification of the Ae. aegypti genome
Site-specific modification of the genome can circumvent the drawbacks of random genomic integration by targeting genomic regions that have previously been shown to have no adverse effects on transgenic strains with regard to transgene function and biological quality. Two main strategies are currently used to site-specifically modify the mosquito genome, site-specific recombination systems and genome editing.
Site-specific recombination and recombinase-mediated cassette exchange (RMCE)
Three different naturally occurring site-specific recombination systems have been turned into molecular tools to modify genomes in mammals and insects: the Cre/lox system from the Escherichia coli phage P1 [62, 63], the Flp/FRT system from the two-micron plasmid of Saccharomyces cerevisiae  as well as the phiC31/att system derived from the Streptomyces phage phiC31 . They are all based on a recombinase enzyme that induces double-strand breaks at specific recombination sequences, followed by strand exchange and re-ligation . Cre and Flp belong to the family of Serine recombinases, which recognize rather short recombination sequences, lox and FRT, respectively. These sequences have a strictly palindromic architecture with a central 8 bp core, where the strand cleavage and re-ligation occurs [67, 68]. For site-specific recombination experiments, identical recombination sequences are placed at a so-called genomic acceptor site and in a donor plasmid. Recombination leads to the integration of the donor plasmid into the genome. Due to their inverted repeat symmetry, the lox and FRT recombination sequences are preserved and can be reused for future recombination reactions. In contrast, the donor and acceptor sequences recognized by the Tyrosine recombinase phiC31 are longer and have a very limited repeat symmetry. Moreover, the donor (attB) and acceptor (attP) sequences share very little sequence identity [68, 69]. Therefore, the recombination between donor and acceptor site leads to new and incompatible attR and attL sites. attR and attL cannot recombine anymore without the presence of additional factors, thus making the reaction irreversible.
Recombination between a single donor and acceptor site leads to the integration of the complete donor plasmid at the genomic target site . The concomitant integration of bacterial resistance genes and regulatory elements in the best case adds unnecessary sequence information. In the worst case it may interfere with transgene expression. To avoid this, a more sophisticated targeting strategy, the recombinase-mediated cassette exchange (RMCE), was developed. The idea for RMCE originates from the discovery that the mutation of certain bases in the central crossover region of lox or FRT sites does not abolish cleavage by the recombinase [71, 72, 73]. Instead, these mutant sites recombine with an identical (homospecific) mutant site with equal efficiency as two wild-type sites, while interaction between sites with non-identical core sequences (heterospecific sites) is prevented. For RMCE, the transgene cassette at the genomic acceptor site as well as the transgene construct in the donor plasmid is flanked by identical pairs of such heterospecific sites [68, 74]. A double recombination between the recombination sequences on both sides of the transgene constructs then leads to the exchange of the genomic landing site cassette for the gene-of-interest cassette from the donor plasmid [70, 75].
RMCE is also possible with the phiC31/att system. However, due to the different architecture of the recombination sites, it follows a different strategy. The genomic acceptor cassette is flanked by attP sites in inverted orientation, and the donor cassette is flanked by inverted attB sites. Double recombination between attP and attB on either side of the cassettes leads to a cassette exchange, that, again, is irreversible. It has been shown that also the opposite setup, i.e. placing the attB sites at the genomic landing site, and the attP sites in the donor plasmid, is functional .
Site-specific integration via a genomic attP docking site is the most frequently used strategy to date to site-specifically target the mosquito genome. Several attP docking site strains exist for the major vector species Ae. aegypti [77, 78, 79], Ae. albopictus , An. gambiae [59, 81, 82, 83], and An. stephensi . Most attP docking site strains have been created by transposon-mediated transformation, resulting in random integration with the potential negative effects on line quality. In contrast, Bernardini et al. specifically placed an attP docking site on the An. gambiae Y-chromosome using meganuclease-induced homologous repair . Amenya et al. tested a set of docking site strains created by transposition in An. stephensi. These strains carry the same construct, an attP docking site and marker gene. They could not detect a significant effect on mosquito fitness, suggesting that attP docking sites in combination with a marker gene per se do not have an inherent negative effect, as long as no insertional mutagenesis effects occur.
Site specific integration via a single FRT site in mosquitoes to our knowledge has been reported only in plasmid-based assays , and via single lox sites only as part of a two-step RMCE . In contrast, site-specific excision via lox sites has been shown first by Jasinskiene et al. , and is commonly applied in Ae. aegypti [50, 79].
Successful RMCE in mosquitoes has been reported for Ae. aegypti, using either the Cre/lox or the phiC31/att system. Cre-RMCE was achieved in a two-step process, where the first step is comprised of the integration of the complete donor plasmid via the recombination of only one of the homospecific lox pairs. Injecting the resulting strain with Cre recombinase in the 2nd step leads to the highly efficient excision of the plasmid backbone via recombination of the second homospecific lox pair, and thus to a complete cassette exchange .
phiC31-mediated cassette exchange was accomplished with two strategies, first with a true RMCE approach according to Bateman et al. , with an efficiency of four to five percent in two independent experiments . The second strategy only indirectly leads to a cassette exchange in two steps by combining attP-mediated integration with lox excision. In the first step the whole donor plasmid with the cassette of interest is incorporated via single attP recombination, followed by loxP excision of the vector backbone such that only the cassette of interest remains. This strategy was termed iRMCE . For Anopheles mosquitoes, only phiC31-RMCE in An. gambiae has been reported so far .
Genome editing via TALEN and CRISPR
A different concept than site-specific recombination systems is site-specific targeting via genome editing tools. Two genome editing methods that were successfully applied to different mosquito genomes are TALEN and CRISPR. TALEs are a class of transcription activator-like effector proteins from Xanthomona [88, 89]. For genome editing purposes, the TAL DNA binding domain is fused to a non-specific DNA cutting enzyme, the restriction endonuclease Fokl [90, 91], to form the TALE nuclease (TALEN). The resulting fusion protein then specifically cuts genomic DNA at the natural binding sequence of the TAL subunit. Although the number of naturally occurring TAL binding sequences is limited, the TAL domain can theoretically be engineered to bind nearly any desired DNA sequence with relative ease [92, 93]. The method has been applied to several insect genomes [94, 95, 96, 97, 98, 99, 100] with satisfying precision and efficiency. In mosquitoes, TALEN was successfully performed in Ae. aegypti  and An. gambiae . In both cases, the targeted gene could be knocked down due to mutations (INDELs) caused by the non-homologous end joining (NHEJ) repair mechanism at the induced double strand breaks. However, the widespread use of TALEN has been and will likely be prevented for two reasons. First, despite its relative ease, engineering TAL binding specificity for a large number of target sites still is quite work intense and costly. Second, a novel and very efficient genome editing tool based on the so-called clustered regularly interspaced short palindromic repeats (CRISPR) was developed. Using CRISPR, target site specificity is determined by the sequence of a small RNA molecule that is much easier to modify and at low cost.
CRISPR/Cas was discovered in 2007 as the prokaryotic equivalent of the eukaryotic adaptive immune system . As part of their immune response to an infection, bacteria and archaea acquire short DNA sequences that originate from foreign DNA, e.g. the infecting virus or plasmid. These acquired foreign DNA sequences are incorporated into the bacterial or archaeal genome and separated by short repeat sequences, thereby forming the CRISPR. Such repeat-spacer sequences are found to date in approximately 40% and 90% of the sequenced bacterial and archaea genomes, respectively. CRISPR arrays are transcribed and processed into short CRISPR RNAs (crRNA) by nucleases of the Cas (CRISPR associated) family of proteins. Small clusters of Cas genes are located next to the CRISPR arrays. The crRNAs are incorporated into ribonucleoprotein (RNP) complexes with another class of Cas proteins. The CRISPR RNPs recognize foreign DNA by sequence complementarity with the crRNA. The foreign DNA is then cut by a Cas nuclease activity similar to RNA interference in eukaryotic organisms , thus conferring immunity against infection with previously encountered infective agents (see [102, 103] or  for comprehensive explanations and illustrations).
Of the three different CRISPR/Cas systems known so far, the multifunctional Cas9 protein from the type II system is the most used nuclease for genome editing in insects. Cas9 requires two types of RNA to function, the crRNA and a transactivating CRISPR RNA (tracrRNA). For more convenient use, scientists engineered the crRNA and tracrRNA into one single-guide RNA (sgRNA) . Moreover, Cas9 activity depends on the presence of a so-called protospacer adjacent motif (PAM) next to the target site. Since its discovery, the CRISPR genome editing system has seen a rapid development and constant improvement of efficiency and specificity by engineering the existing Cas protein [106, 107, 108, 109, 110], characterizing and adapting new Cas proteins like Cpf1  or C2c2 , or by engineering of sgRNAs [113, 114]. For a comprehensive review on current Cas variants see Cebrian-Serrano et al. .
The first insect genome edited via CRISPR/Cas was that of D. melanogaster [116, 117, 118]. In 2014 and 2015, CRISPR/Cas was transferred to mosquitoes. Dong et al. provided the first proof-of-principle experiment in Ae. aegypti by knocking out a marker gene in a transgenic line . At the same time, Kistler et al. published a systematic study on the composition of CRISPR injection mixes and gRNA design in Ae. aegypti. The authors achieved a knockdown rate of at least 18% using two gRNAs per target gene in three independent experiments. Moreover, they succeeded in integrating large fluorescent protein cassettes via CRISPR/Cas . Recently it was shown that germline expression of Cas9 in Ae. aegypti strongly enhances the mutagenesis rate , in accordance with the results in D. melanogaster [122, 123, 124, 125]. In 2015, Basu et al. investigated the effect of knocking down the NHEJ pathway in Ae. aegypti on the rate of NHEJ versus HDR in TALEN and CRISPR experiments . The permanent knockdown of Lig4 failed to create strains viable for more than a few generations and transient Lig4 knockdown did not produce the desired results. In contrast, the transient knockdown of ku70 (which was also successfully used in B. mori to suppress NHEJ ) resulted in HDR events with a frequency of about 2% for TALEN as well as CRISPR .
With the simplicity to re-program CRISPR/Cas to new target sites, it has become much easier and more straight-forward to knock down specific genes to elucidate their function. During the investigation of the gene Nix as the long-searched Aedes maleness-factor, CRISPR/Cas was used to knock down Nix to show that the factor governs the male determining pathway. Its knockdown resulted in female-specific splicing of the sex-determination genes fruitless and doublesex, and feminized genetic males . Similarly, CRISPR knockdown of two miRNA-encoding sequences in Ae. aegypti helped to elucidate their function in development and lipid metabolism [128, 129].
Along the same line, Li et al. optimized CRISPR for site-specific mutagenesis in three Anopheles species, An. funestus, An. coluzii and An. albimanus, with the goal to establish CRISPR/Cas as an efficient tool for reverse genetics in Anopheles mosquitoes . In An. gambiae, CRISPR/Cas was used to target ribosomal sequences on the X chromosome, with the goal of creating a sexing strain. Expressing Cas9 during male gametogenesis leads to RNA-guided shredding of the X chromosome in sperm, resulting in highly male-biased offspring . This experiment recapitulates the original X-shredder that used a naturally occurring endonuclease targeting ribosomal sequences on the X chromosome . Recently, a pipeline for the identification of abundant and specific X-chromosome target sequences for X-shredding by CRISPR endonucleases was developed . The flexibility of CRISPR/Cas should allow the transfer of this approach to many other mosquito species with an XY sex determination system.
Besides strongly facilitating functional gene studies and genome editing, CRISPR has also revolutionized the field of gene drive research. Gene drives offer additional possibilities to address population control or vector capacity of mosquitoes. They could be developed to drive female sterility into a population, or to convert females into males, both of which should lead to the collapse of the (local) wild population. On the other hand, natural populations could be replaced with transgenic strains that are refractive to pathogen infection [48, 133, 134, 135]. Recent work resulted in two gene drive systems in Anopheles. The first approach in An. gambiae targets female fertility by inserting a CRISPR/Cas gene drive construct in three candidate genes conferring recessive female sterility upon disruption . A CRISPR-based gene drive in An. stephensi is used to drive multiple anti-plasmodium effector genes into a wildtype population, resulting in more than 99% of positive offspring . Gene drive research, however, is still at its beginning. Consequently, the understanding of gene drive behavior in a real population is very limited, especially since each drive behaves differently, depending on its architecture and components. Although there is lots of activity on the modeling side to predict the behavior of gene drives in a population [137, 138, 139, 140, 141, 142, 143], there are not many real data sets available yet. Moreover, recently observed resistance development poses further challenges for the field [144, 145, 146]. Therefore, more thorough research including safeguards, control strategies and potential reversibility of released gene drives will be necessary before such applications could be considered for vector control .
With transposable elements, site-specific recombination systems and genome editing via CRISPR/Cas there are three powerful molecular tools available that can help to achieve the goal of creating efficient sexing strains for the major vector mosquitoes and thereby enable large-scale control programs based on the (mass-) release of male mosquitoes. Aedes as well as Anopheles mosquitoes are amenable to the available tools, and researchers are continuously working to further develop and optimize the tools for their use in efficient mosquito genome modification [83, 120, 121, 148]. These molecular tools can be used in two ways to progress towards the goal of creating sexing strains in mosquitoes. First, in basic research and second, in the application of the knowledge obtained from basic research to build sexing systems. Basic research recently led to the discovery of important male-determining factors in mosquitoes, the Ae. aegypti M-factor Nix , and the An. gambiae maleness factor Yob . These crucial insights into mosquito sex determination can and will be exploited for the development of sexing systems, for example to build a female lethality system by conditionally overexpressing Yob , or to achieve female to male conversion by conditionally overexpressing Nix . The available genome modification tools will then allow the creation of (transgenic) sexing strains for vector control applications. Other strategies could be to a build a female lethality system similar to the TESS, based on the conditional early embryonic expression of lethal genes in females but not males [24, 25]. While it has been shown that exogenous genes and regulatory elements for such constructs can be functional in related species [24, 25, 54], several studies indicated that the endogenous homologue, if available, can be more effective . Where such homologues have not been identified yet or for species where no genome sequencing data are available, more basic research will be necessary. Alternatively, mutations that are already successfully used for sexing in one species, could be exploited to create similar mutations in other species via CRISPR, once the molecular basis of the mutation is uncovered. The resulting sexing strains might even not be considered transgenic, depending on the applied modification. A prime example for such a mutation is the Medfly VIENNA 8 temperature-sensitive lethal (tsl) that was created by chemical mutagenesis and kills female embryos upon heat shock . Genome modification and genome editing tools could thus facilitate the transfer of successful strategies from one species to another. Site-specific systems further allow to compare the effectiveness of potential candidate genes and transgene constructs for sexing systems at the same genomic location unbiased by genomic position effects, which is not possible for transgenic strains created by transposition due to the random genomic integration. Thus, the most suitable approach or construct in terms of sexing efficacy can be selected.
We thank Tanja Rehling for excellent technical assistance.
The Emmy Noether program of the German Research Foundation (SCHE 1833/1-1; to MFS) and the LOEWE Center for Insect Biotechnology and Bioresources of the HMWK (MFS). This project benefitted from discussions at meetings of the FAO/IAEA-funded Coordinated Research Project: ‘Exploring genetic, molecular, mechanical and behavioral methods of sex separation in mosquitoes’. Publication costs for this study was provided by the International Atomic Energy Agency as part of the Coordinated Research Project “Exploring genetic, molecular, mechanical and behavioural methods of sex separation in mosquitoes”. The funders had no role in study design, data collection, analysis and interpretation, decision to publish, or preparation of the manuscript.
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All data generated or analyzed during this study are included in this published article.
About this supplement
This article has been published as part of Parasites & Vectors Volume 11 Supplement 2, 2018: Exploring genetic molecular, mechanical and behavioural methods of sex separation in mosquitoes. The full contents of the supplement are available online at https://parasitesandvectors.biomedcentral.com/articles/supplements/volume-11-supplement-2.
IH and MFS wrote the paper. The final manuscript was read and approved by all authors.
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