Generation of recombinant MVA-norovirus: a comparison study of bacterial artificial chromosome- and marker-based systems
Recombinant Modified Vaccinia Virus Ankara has been employed as a safe and potent viral vector vaccine against infectious diseases and cancer. We generated recMVAs encoding norovirus GII.4 genotype capsid protein by using a marker-based approach and a BAC-based system. In the marker-based approach, the capsid gene together with a reporter gene was introduced into the MVA genome in DF-1 cells. Several rounds of plaque purification were carried out to get rid of the WT-MVA. In the BAC-based approach, recMVA-BAC was produced by en passant recombineering in E. coli. Subsequently, the recMVAs were rescued in DF-1 cells using a helper rabbit fibroma virus. The BAC backbone and the helper virus were eliminated by passaging in DF-1 cells. Biochemical characteristics of the recMVAs were studied.
We found the purification of the rare spontaneous recombinants time-consuming in the marker-based system. In contrast, the BAC-based system rapidly inserted the gene of interest in E. coli by en passant recombineering before virion production in DF-1 cells. The elimination of the reporter gene was found to be faster and more efficient in the BAC-based approach. With Western blotting and electron microscopy, we could prove successful capsid protein expression and proper virus-assembly, respectively. The MVA-BAC produced higher recombinant virus titers and infected DF-1 cells more efficiently.
Comparing both methods, we conclude that, in contrast to the tedious and time-consuming traditional method, the MVA-BAC system allows us to quickly generate high titer recMVAs.
KeywordsBacterial artificial chromosome Recombinant MVA Self-excising Norovirus
Bacterial Artificial Chromosome
Chicken Embryo Fibroblast
Green Fluorescence Protein
Modified Vaccinia Virus Ankara
Polymerase Chain Reaction
Plaque Forming Unite
Rabbit Fibroma Virus
Norovirus is highly infectious and can be serious to individuals with underlying conditions, the elderly, young children and immunocompromised patients. GII.4 genotype evolves faster than other genotypes and global pandemic outbreaks often correlate to the emergence of new GII.4 variants [1, 2, 3]. Major capsid protein (VP1) is responsible for virus attachment to the histo-blood group antigen . The capsid protein is divided into shell (S) domain and a protruding (P) domain linked together by a hinge of eight amino acids [4, 5]. The aim of this study was to generate a recMVA expressing norovirus (NoV) capsid protein of GII.4 genotype. We plan to apply the constructs as vaccine candidates against this most prevalent gastroenteritis virus.
Modified Vaccinia Ankara (MVA) is a highly attenuated strain of vaccinia virus derived by extensive serial passages in chicken embryo fibroblasts (CEF) . MVA can be produced in large scale in chicken cell lines under bio safety level 1. Temporal high expression of MVA-delivered antigens can modulate antigen-specific immune responses, making it a suitable vaccine carrier [6, 7, 8, 9]. We followed a traditional marker-based method (as reviewed by Drexler et al. ) and a BAC-based approach as described by Dai  and Cottingham et al.  for generation of recMVA-NoV constructs. Both techniques produced recombinant MVA delivering the desired antigen.
Generation of recombinant MVA by homologous recombination in DF-1 cells
Generation of recombinant MVA-BAC
Biochemical characterization of the recMVAs
The highly attenuated vaccinia virus, MVA, has been established as a safe and potent viral vector for the development of recombinant vaccines [7, 19, 20, 21]. MVA-based vaccines have been shown to induce a robust T cell response to the transgene [16, 22, 23]. A short burst of antigen expression following immunization makes it also suited for B cell boosting . In the present study, we generated recMVA vectors encoding norovirus GII.4 capsid protein to be used as B- and T- cell booster in a prime-boost vaccination regime. In this work, beside the available marker-based approach, a BAC-based system was applied for generation of recombinant MVA vectors. The marker-based approach relies upon homologous recombination with a shuttle vector in virus-infected cells. We used pIIIH5 Red K1L as shuttle vector where the NoV GII.4 capsid gene was inserted downstream of the modified H5 promoter PmH5 which contains both native early and late vaccinia promoter regions . PmH5 is a strong vaccinia virus promoter that overexpresses the respective antigens in a high dose, during the early and late phase of virus infection . It has been shown that antigen driven by PmH5 elicited dramatically a higher immunogenicity than those by other vaccinia virus promoters [26, 27]. In addition, mH5 promoter improves stability of insert genes during extended passages when compared with some other strong promoters such as pSyn I or II . The transgene was designed so that it can recombine into the DelIII site of the MVA genome by homologous flanks adjacent to the gene of interest. Forty-eight hours after introducing the shuttle vectors into DF-1 cells, recMVA-producer cells were recognized by mCherry expression. In early passages, plaque picking was tedious, as only a few cells were infected and a high number of plaques had to be isolated for the second round of purification. After several rounds of plaque purification from infected cells with highly diluted virus-titers we managed to eliminate wild type MVA. The reporter gene mCherry is removed by spontaneous homologous recombination of two flanking sequences. Therefore, after some rounds of plaque purification we expected a decrease in fluorescence signal with an increase in the recMVA yield. Eliminating the reporter gene is particularly important when the potential vaccine is required for clinical applications. The production of this markerless construct brought up another drawback as MVA does not form morphologically distinct plaques in DF-1 cells. Hence, picking of mCherry-negative plaques issued another challenge. We could not eliminate the mCherry reporter marker after 10 rounds of passaging (data not shown). Even though the marker-based generation of MVA recombinants is robust, purification of the rare spontaneous recombinants is time-consuming and cumbersome.
In the BAC-based system, a self-excising variant of MVA-BAC was applied in which the BAC cassette harboring the selection marker is spontaneously removed from derived recombinant viruses. The major advantage compared to the marker-based attempt is the utilization of E. coli as a production platform. In this way, positive clones harboring the expression cassette can easily be identified by their Kanamycin resistance. In contrast, the only way to determine positive clones in the marker-based system is mCherry expression in infected DF-1 cells. Hence, the MVA-BAC system guarantees the successful incorporation of the gene of interest at a stage much ahead of the actual production of virions in DF-1 cells. GFP-expression facilitated evaluation of correct transfection of DF-1 cells significantly and, importantly, the cassette was lost after few rounds of sub-passaging. Compared to the marker-based approach, the elimination of the marker gene scar was found to be vastly superior in the BAC-system. In contrast to the marker-based methods, where several rounds of plaque purification are required for elimination of the WT virus from the culture, in MVA-BAC approach RFV, providing initial transcriptional products for virus replication, was eliminated very fast, after two rounds of passaging. RFV infection in DF-1 cells is abortive as the virus is unable to replicate in these cells.
After successful production of recMVAs, stable integration of the capsid gene into the genome was confirmed. Successful expression of the capsid protein was then confirmed by visible VP1 band in Western blot for the recombinants. With electron microscopy, we could see the expected round 300 × 250 nm viral particles . We also visualized recMVAs by a binding assay. Attachment of the recombinant MVA particles on the DF-1 cell surface was clearly visible; even though our subjective impression suggested a higher binding rate for the recMVA-BACs.
Not only high virus titer was measured with recMVA-BACs, but also infection of new DF-1 cells was more efficient than with the recMVAs obtained by the marker-based method. We therefore hypothesize that the MVA-BAC platform provides more functional viral particles. This might be due to the location of transgene insertion. The marker-based approach uses DelIII, whereas MVA-BAC aims for DelVI. DelIII has occurred in earlier passaging stages during MVA generation whereas DelVI has occurred 190 passages later. Interestingly, these deletion sites are in close proximity within the MVA genome. It still is not known what effects the deletion sites have on attenuation [28, 29]. However, these factors may contribute to the anticipated different protein expression levels as well as infection- and amplification properties of the virus.
In this study, we successfully constructed recombinant MVA expressing norovirus capsid protein of GII.4 genotype by two different approaches. We conclude that the MVA-BAC system quickly produces high amounts of functional recombinant viral particles. The generation of the expression cassette, manipulate the MVA genome and removal of the selective marker resistance gene is done in E. coli, which simplifies handling and generation of recombinant MVAs.
Although MVA is known to be a potent boosting vector, it has limitations for priming immunostimulatory responses . MVA can induce CD8+ and accompanying CD4+ T cell response and a short burst of antigen expression also boosts B cells [16, 19, 21]. Therefore we suggest using recMVAs as booster for B- and T- cell responses in combination with protein-, DNA- and/or mRNA vaccines.
Plasmids, bacterial strains, cells and viruses
DF-1 chicken fibroblast cells were used for MVA replication. Wild-type MVA  was obtained from the Institute of Infectious Diseases and Zoonosis, University of Munich LMU. MVA-BAC plasmid and helper Rabbit Fibroma Virus (RFV) was obtained from the Institute of Virology, Universitätklinikum Düsseldorf. E. coli GS1783 was used for generation of recMVA-BAC plasmid. Cloning plasmid pEX-K4-NoVGII.4 was used as a template for amplification of the NoV capsid gene. The pIIIPH5-RedK1L plasmid (Fig. 3a) was used as a shuttle vector for generation of recMVA by the marker-based approach. It contains an expression unit under control of a PmH5 promoter . Homologous recombination with the non-essential DelIII of MVA is directed by two stretches of genomic MVA sequences flanking the foreign gene and the mCherry cassette. The pEP-MVAdVI-PH5 plasmid containing two homologous sequences to the DelVI of the MVA genome was used as a shuttle vector for generation of recMVA-BAC. It contains MVA DNA homologous flanking sequences (FL1/2) adjusted to the MVA deletion VI (DelVI) region. The plasmid encodes for the ampicillin resistance gene as well as for the kanamycin resistance gene aphAI. There is an 18-bp recognition site of the endonuclease I-SceI upstream the Kan cassette. I-SceI generates a double-strand break at the recognition site without cleavage of human, bacterial or viral DNA . Adjacent to the I-SceI sequence and the Kan cassette, the 51 bp homologous sequences DX´ and DX´´ ensure the elimination of the marker gene by homologous recombination.
Generation of recMVA in MVA-infected DF-1 cells
Construction of MVA shuttle vector
List of primers used in this study
Sequence 5′ → 3´
For control PCR/sequencing after first recombination into MVA-BAC
To check the presence of WT and gene insertion after plaque picking
For first homologous recombination into the MVA-BAC by En-passant
For cloning of NoV GII.4 into pEP-MVAdVI-PH5 plasmid
For cloning of NoV GII.4 into the pIIIH5 shuttle vector
To check the presence of helper virus RFV in the transfect cells with recMVA-BAC
Generation of recMVA by homologous recombination
At confluency of approximately 90%, DF-1 cells were infected with WT-MVA at MOI 0.05 for 1.5 h at 37 °C. The cells were then transfected with the pIIIH5-RedK1L-GII.4VP1 plasmid using Lipofectamin® 2000 transfection reagent (Thermo Scientific, USA) as described by Moeini et al. . Forty-eight-hour post-transfection, the cells were harvested by scraping and centrifugation at 4000 rpm, 4 °C for 10 min. The cells were resuspended in 1 ml media and viral particles were released from the cells by 3 times freeze-thawing. Cell debris was pelleted at 14,000 rpm for 10 min, and 200 μl of the virus-containing supernatant was used to infect new DF-1 cells in 6-well plates in a serial dilution (10− 1–10− 6). Two days post-infection, the cells were checked under fluorescence microscope for the expression of the reporter gene, mCherry. Red plaques were picked and used to infect new DF-1 cells for further purification of the mCherry-expressing plaques. Plaque picking was carried out for several rounds to get rid of the WT-MVA. In each step of plaque purification, the cells were checked for the presence of the WT-MVA by PCR using DelIII-specific primers listed in Table 1.
Generation of recMVA by BAC-based system
Construction of MVA shuttle vector
Norovirus GII.4 capsid gene was amplified from the pEX-K4GII.4 plasmid using a pair of specific primers listed in Table 1 and inserted into the XbaI and BglII sites of the shuttle vector pEP-MVAdVI-pH 5 using In-Fusion cloning kit. After transformation into E. coli competent cells, positive clones were screened on LB-Amp agar; plasmids were extracted and subsequently gene insertion was confirmed by PCR and RE digestion. Finally, the integrity of the gene insert was confirmed by sequencing.
Insertion of the VP1 gene into the MVA-BAC genome
E. coli GS1783 carrying MVA-BAC (GS1783/MVA) was grown overnight at 32 °C in LB broth supplemented with 30 μg/ml chloramphenicol (Cam); electrocompetent cells were prepared as previously described . The GII4 VP1 gene along with the KanS fragment (including Kan cassette and I-SceI restriction site) was amplified from the pEP-MVAdVI-pH 5-GII4VP1 plasmid using MVA DelVI primers listed in Table 1. The PCR products were treated with DpnI, purified and introduced into the electrocompetent E. coli GS1783/MVA cells for the first Red recombination. Briefly, in a pre-chilled electroporation cuvette, 100 ng of the PCR products was added to 50 μl of the electro-competent cells and electro-transformation was carried out at 15 kV/cm, 25 μF, 200 Ω using the Gene Pulser Xcell Electroporation device (Bio-Rad, USA). The cells were immediately mixed with 1 ml LB broth followed by 1 h incubation at 32 °C. Positive clones were screened on LB/cam agar after 24 h incubation at 32 °C. Recombinant MVA-BAC plasmids were extracted using the GeneJet Plasmid Miniprep Kit (Thermo Scientific, USA) and gene insertion was confirmed by PCR using the DelVI primers.
To remove the co-integrated Kan cassette from the inserts, in 1 ml LB-Cam broth medium, E. coli cells carrying recombinant MVA-BAC were inoculated at 32 °C and 220 rpm for 2 h until the culture became cloudy. Thereafter, to induce the production of I-SceI, 1 ml pre-warmed LB-Cam medium + 2% arabinose was added to the culture followed by 1 h incubation at 32 °C and 220 rpm. The cells were then heat-shocked at 42 °C in a shaker water bath for 30 min to induce Red recombinase. After 2–3 h incubation at 32 °C in a shaker incubator, the cells were screened on a LB-Cam agar plate supplemented with 1% arabinose. After 2 days of incubation at 32 °C, positive clones were tested for the resolution of the co-integrated cassette by PCR.
MVA BAC-rescue in DF-1 cells
In 6-well plates, at confluency of 80–90%, DF-1 cells were transfected with the recMVA- BAC GII4VP1 plasmid using Lipofectamin® 2000 transfection reagent. For reactivation of MVA, after 3 h incubation at 37 °C, the cells were infected with the helper virus RFV at MOI 1 with gentle rotation . One hour later, the wells were filled up with RPMI medium supplemented with 10% FCS. After 24–48 h incubation at 37 °C, the cells were checked for the expression of GFP with the Fluorescence Microscope CKK41 (Olympus, Germany).
After successful rescue of viral progeny from the BAC, to remove the helper virus, the cells were harvested by scraping and spun at 4000 rpm and 4 °C for 10 min. The cell pellet was resuspended in 1 ml DMEM GlutaMAXX (Gibco/Thermo Scientific, USA) and viral particles were released from the cells by 3 times freeze-thawing. Cell debris was precipitated by 10 min centrifugation at 14,000 rpm. Two-hundred μl of the virus-containing supernatant in serial dilutions (10− 1–10− 6) was used to infect new DF-1 cells at confluency of 70–80%, in a 6-well plate. Three days later, cells from the most infected wells were harvested and blind passages were repeated until RFV was eradicated. This was tested by PCR using the RFV-specific primers listed in Table 1. Passages were continued to get rid of the plasmid backbone and GFP cassette from the viral genome. Finally, in positive recMVA-producing cells, the integrity of the gene inserts was checked by sequencing of the DelVI PCR product.
Virus stock preparation by ultracentrifugation
DF-1 cells were seeded in T-75 flasks and then at confluency of 80–90% were infected with the recMVA viruses. Two days post-infection, the cells were harvested by scrapping; washed with 1 × PBS and then resuspended in 10 mM Tris pH 9. After 3 times freeze-thawing, the samples were sonicated 3 times on ice, each for 30 s, at 100% power. The cell debris was sedimented at 4000×g, 4 °C for 5 min. In UltraClear tubes (Bechman Coulter, Germany), the supernatant containing viral particles was added to 36% sucrose and viral particles were pelleted with ultracentrifugation at 13,500 rpm and 4 °C for 1.5 h. Virus pellets were air-dried and resuspended in 200 μl 10 mM Tris pH 9 for further analysis.
Negative staining was carried out to visualize recMVA particles by electron microscopy (EM). For this, 5 μl of the purified virus suspension was put on a S162 flying copper grid. After 5 min, the copper grid was washed with 5 μl water and then were stained with 0.5% uranyl acetate in water for 20 s. The fluid film was removed with a paper and the samples were then analyzed by EM.
Immunofluorescence staining for binding assay
In 12-well plates, UV-sterilized cover slips were coated with 1:20 diluted L-lysine in PBS at 37 °C for 1 h. After washing with 1 × PBS, DF-1 cells were seeded on the coated cover slips. At confluence of 70–80%, the culture medium was removed; the cells were washed twice with ice-cold PBS and then incubated with virus supernatant at 4 °C for 2–3 h. The cells were then washed (3x) carefully with PBS; fixed with 4% PFA for 20 min and then incubated for 30 min at 37 °C with anti-Vaccinia virus primary antibody (Acris Antibodies, Germany) diluted in PBS + 10% serum. Slides are washed twice, each for 5 min, with 1 × PBS before adding goat Alexa Fluor 594-conjugated anti-rabbit IgG (H + L) secondary antibody in PBS + 10% serum. After 30 min incubation at 37 °C in a dark chamber, the cover slips were washed (× 2, each for 5 min) and then transferred upside down to a glass slide with DAPI mounting solution. The next day, the cells were analyzed with the Confocal Microscope Fluoview FV10 (Olympus, Germany).
Virus titration - plaque forming units
Virus titer was measured for three virus preparations. Briefly, ten-fold serial dilutions (10− 4–10− 9) of virus suspension in 2% FCS medium were plated out in duplicates on confluent DF-1 monolayers in 6-well plates. After 2 h infection at 37 °C, the inoculum was removed and the cells were washed with 1 × PBS followed by 2 days incubation at 37 °C in 2% FCS medium. After that, the medium was removed and the cells were fixed with a 1:1 mixture of ice-cold (− 20 °C) acetone:methanol for 5 min at RT. The cells were then blocked for 1 h at RT with PBS + 3% FCS and were incubated with rabbit anti-Vaccinia virus primary antibody (Acris Antibodies, Germany), diluted 1:2000 in PBS + 3% FCS, for 1 h at RT. After washing (× 3) with PBS + 3% FCS, the cells were incubated with peroxidase-conjugated anti-rabbit IgG (1:5000 in PBS + 3% FCS) for 1 h at RT with gentle rocking. The cells were washed (× 3) and then incubated with the True-Blue Peroxidase Substrate for about 10 min. Stained plaques were counted and virus titer was calculated in PFU/ml by multiplying the mean plaque number (big, clearly blue plaques, not including satellite plaques) by the magnitude of dilution.
We thank Prof. Gerd Sutter and Michael Lehmann for providing wild-type MVA. We also thank Martin Kächele for helping to produce and biochemically characterize recombinant MVAs.
FK carried out the experiment. ID and UP helped supervise the project and contributed to the final version of the manuscript. HM and DH conceived and planned the experiments and supervised the project. All authors read and approved the final manuscript.
The DH received funding from the German Center for Infection Research (http://www.dzif.de/en/); grant number TTU06.804. ID received funding from the German research Foundation (http://www.dfg.de/en/); grant number GRK1449. The funders had no role in study design, data collection and analysis, or preparation of the manuscript.
Ethics approval and consent to participate
Consent for publication
The authors declare that they have no competing interests.
- 10.Dai L. Generation, Characterization and Application of a Novel BAC System for MVA Mutagenesis to Investigate the Function of Vaccinia Virus Immune Modulatory Gene N1L. Munich: Technische Universität München; 2014.Google Scholar
- 13.Nagel C-H, Pohlmann A, Sodeik B. Construction and characterization of bacterial artificial chromosomes (BACs) containing herpes simplex virus full-length genomes. Methods Mol Biol. 2014;1144:43-62.Google Scholar
- 22.Gómez CE, Perdiguero B, Cepeda MV, Mingorance L, García-Arriaza J, et al. High, broad, polyfunctional and durable T cell immune responses induced in mice by a novel hepatitis C virus (HCV) vaccine candidate based on MVA expressing the near full-length HCV genome (MVA-HCV). J Virol. 2013;87(13):7282-300.Google Scholar
- 23.Mooij P, Balla-Jhagjhoorsingh SS, Koopman G, Beenhakker N, Van Haaften P, et al. Differential CD4+ versus CD8+ T-cell responses elicited by different poxvirus-based human immunodeficiency virus type 1 vaccine candidates provide comparable efficacies in primates. J Virol. 2008;82:2975–88.CrossRefGoogle Scholar
- 26.Baur K, Brinkmann K, Schweneker M, Pätzold J, Meisinger-Henschel C, et al. Immediate-early expression of a recombinant antigen by modified vaccinia virus Ankara breaks the immunodominance of strong vector-specific B8R antigen in acute and memory CD8 T-cell responses. J Virol. 2010;84:8743–52.CrossRefGoogle Scholar
- 30.Kremer M, Volz A, Kreijtz JH, Fux R, Lehmann MH, Sutter G. Easy and efficient protocols for working with recombinant vaccinia virus MVA. Methods Mol Biol. 2012;890:59-92.Google Scholar
- 33.Tischer BK, Smith GA, Osterrieder N. En passant mutagenesis: a two step markerless red recombination system. Methods Mol Biol. 2010;634:421-30.Google Scholar
Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.