Differentiation of haploid and diploid fertilities in Gracilaria chilensis affect ploidy ratio
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Algal isomorphic biphasic life cycles alternate between free-living diploid (tetrasporophytes) and haploid (dioicious gametophytes) phases and the hypotheses explaining their maintenance are still debated. Classic models state that conditional differentiation between phases is required for the evolutionary stability of biphasic life cycles while other authors proposed that the uneven ploidy abundances observed in the field are explained by their cytological differences in spore production.
We monitored the state and fate of individuals of the red seaweed Gracilaria chilensis periodically for 3 years in five intertidal pools from two sites with distinct conditions. We tested for differentiation in fecundity and spore survival among the gametophyte males and females (haploids) and the tetrasporophytes (diploids). We tested for the influence of fecundity and spore survival on the observed uneven ploidy abundances in recruits. The probability of a frond becoming fecund was size-dependent, highest for the haploid males and lowest for the haploid females, with the diploids displaying intermediate probabilities. Fecund diploids released more tetraspores than carpospores released by the haploid females. Spore survival depended on ploidy and on the local density of co-habiting adult fronds. An advantage of diploid over haploid germlings was observed at very low and very high adult fronds densities.
Neither spore production nor spore survival determined the highly variable ploidy ratio within G. chilensis recruits. This result invalidates the hypothesis of natural cytological differences in spore production as the only driver of uneven field ploidy abundances in this species. Diploid spores (carpospores) survived better than haploid spores (tetraspores), especially in locations and time periods that were associated with the occurrence of strong biotic and abiotic stressors. We hypothesise that carpospore survival is higher due to support by their haploid female progenitors passing-on nutrients and chemical compounds improving survival under stressful conditions.
KeywordsGametophyte Tetrasporophyte Isomorphic biphasic life cycle Phase ratio Ploidy ratio Recruitment
Analysis of Variance
Corral sampling site
Corral pool #1
Corral pool #2
Iterative Reweighted Least Squares
Niebla sampling site
Niebla pool #1
Niebla pool #2
Niebla pool #3
Ratio of tetraspore-to-carpospore production
Ratio of haploid-to-diploid recruits
Ratio of tetraspore-to-carpospore survival
An alternation between haploid and diploid nuclear phases is a necessary consequence of eukaryotic sexuality. However, due to variation in the relative timing of meiosis and syngamy in life cycles, the duration of these two phases vary widely among organism . Although the multicellular haploid generation went extinct in the life cycle of vascular plants roughly 400 million years ago [2, 3], it persists in the haploid-diploid life cycles (also known as biphasic life cycles) commonly found, for example, in many green, red and brown seaweeds . In these life cycles, free-living haploid gametophyte and diploid sporophyte phases are morphologically distinct from one another (heteromorphic) to seemingly identical to each other (isomorphic). In the heteromorphic case, gametophytes and sporophytes generally display marked differences in size, morphology and physiology, and have been observed to occupy different spatio-temporal niches (see for review Thornber ). Thus, it is not surprising that most developed hypotheses and models explaining the maintenance of haploid-diploid life cycles rely on the existence of some degree of niche differentiation between the two phases [5, 6, 7]. Mirroring the classical Lotka–Volterra model of interspecific competition [8, 9], the coexistence of haploid and diploid individuals in a population requires only slight differentiation in adaptation to different environments (i.e., differences in temperature, light levels or grazing pressure ).
In this context, the evolutionary stability of the isomorphic biphasic life cycle is complex to explain. Theoretically, two similar entities completely overlapping their niche cannot sustainably co-exist as one inevitably eliminates the other. However, the fact that phases in isomorphic biphasic life cycles have similar gross morphology does not necessarily mean that they are ecologically similar. Such ecological differentiation has been revealed in numerous cases during the last decades (e.g. [10, 11, 12, 13, 14, 15]). Differences in chemical compounds have been shown to influence the fate of endophytic infection , palatability [17, 18, 19, 20], tolerance to wave exposure  and desiccation . So, these differences can cause profound differentiation in mortality and fertility rates between isomorphic phases. Even for isomorphic species for which no conspicuous biochemical differences have been revealed, ecological phase differences have been observed at both microscopic and macroscopic stages [13, 15, 23, 24, 25]. Therefore, as for heteromorphic life cycles, it has been argued that the evolutionary stability of isomorphic biphasic life cycles is sustained by the niche partitioning among ploidies, driven by the conditional differentiation of their individuals . Many studies have reported uneven field abundances of haploids and diploids (i.e., commonly reported as the ratios of H:D or G:T, where H and G stands for the haploid gametophytes and D and T for the diploid tetrasporophytes). Furthermore, these uneven abundances often vary between species or even between populations of the same species [11, 12, 13, 15, 26, 27, 28, 29, 30]. Such differences in the haploid-diploid ratio have been associated to ecological dissimilarities between phases in fecundity, recruitment, growth or mortality [11, 12, 15]).
If the survival and fertility of both phases is equivalent, demographic models predict that the proportion of diploids present in a haploid-diploid population at the equilibrium should be 0.41 [12, 44]. Though most G. gracilis populations studied showed diploid proportions close to 0.41 , this was not the case for the closely related species G. chilensis . Indeed, in G. chilensis the proportion of diploids varies widely among populations – from clear excess of haploids to clear excess of diploids - with a tendency to show more populations with excess of diploids (7 of the 11 natural populations studied show a proportion of diploids > 0.41, ). Interestingly, in G. chilensis, the existence of a clear conditional differentiation of survival between phases was demonstrated in the field . Haploid females were shown to survive more in stressful conditions (namely under very low or very high densities) than the haploid males and diploids and, when fertile, the survival of haploid females also surpassed the survival of the diploid tetrasporophytes . In this case, differences in survival between phases did not seem to explain the generally high frequency of diploids observed in previous studies . Differences in fertility or recruitment have not been thoughtfully tested yet in the field for this species, but previous experiments in controlled laboratory conditions have, though, given some insight in the existence of possible phase differences for spore attachment and survival and growth of germlings . Here, using natural populations of G. chilensis monitored for 28 months, we test for field evidences of differences in fertility and recruitment among haploid males, haploid females and diploid tetrasporophytes, and how these factors could influence natural haploid-diploid ratios.
Materials and methods
The red macroalga Gracilaria chilensis is common along the Chilean shore. Individuals, fixed by a holdfast, inhabit the intertidal rocky bottom and may survive and re-grow new fronds after losing old ones . Its complex life cycle alternates between isomorphic free living tetrasporophytes (diploids) and gametophytes (haploids) and is commonly named “isomorphic biphasic” or “haploid-diploid” (Fig. 1). Red algae life cycle also includes the grow of the carposporophyte after syngamy, a diploid structure that is sometime referred to as a third diploid phase and some authors refer to their life cycle as “triphasic”. However, since carposporophytes are short-lived and dependent on the haploid female thallus for development , within the present work we refer to our model species life cycle as biphasic or haploid-diploid, as commonly done in previous studies [4, 7, 10, 11, 12, 13, 14, 15, 18, 19, 20, 25, 39, 40, 41, 42, 43]. In G. chilensis, tetrasporophyte adults produce haploid tetraspores after meiosis and release them to the environment. Settled tetraspores, germinate and grow into adult haploid male or female gametophytes. The gametophyte males release gametes and fertilization occurs on female individuals. From the fertilized oogonia, a short-lived diploid epiphytic stage (the carposporophyte, Fig. 1d) develops on the female gametophyte, producing thousands of diploid spores (i.e., carpospores, Fig. 1e) . The carpospores are released into the environment where they settle, germinate and grow into diploid tetrasporophyte adults.
Demographic monitoring of individuals was performed in five intertidal rock-pools (‘Corral 1’, ‘Corral 2’, ‘Niebla 1’, ‘Niebla 2’ and ‘Niebla 3’) within two sites (Corral 39°52′27″S / 73°24′02″ W and Niebla 39°55′47″S / 73°23′57″W) along the margins of the Valdivia River estuary, from October 2009 to February 2011 at four-month intervals. In the Southern Hemisphere, the interval between the February and June, June and October, and October and February census mostly corresponds to the autumn, winter and spring and summer, respectively. All individuals within each rock-pool were mapped relative to a pair of fixed points (see Engel et al. ). A small fragment of the thallus was collected from each individual for the identification of reproductive males (M), females (F) and tetrasporophytes (D for diploids) by their reproductive structures under a binocular microscope. Vegetative individuals, were identified using the sex-specific molecular markers developed in Guillemin et al. . At each census, frond length and diameter were recorded for each observed individual. The volume (v, in cm3) of a cylinder of equal length and diameter was used as a proxy for ramet biomass since this estimate correlated with dry weight (r2 = 0.877; P < 0.0001; n = 281). Every individual absent after 4 months was re-checked after 8 months for confirmation and considered dead when absent in the re-check.
Probability of becoming fecund (ρ)
Spore production rates
The number of spores produced per unit frond volume was estimated for all mature female gametophytes and diploid tetrasporophytes. For each mature female gametophyte, the number of cystocarps (i.e., the short-lived diploid epiphytic stage growing on haploid female thallus) found on the 10-cm distal extremity of three branches was counted . Four hundred cystocarps were sampled from 20 mature female gametophytes chosen randomly (i.e., 20 from each female) and these 400 cystocarps were placed together in 30 mL of filtered seawater in a Falcon tube kept at 4 °C. Note that a small part of the female thallus was excised jointly with the cystocarps. The number of diploid carpospores produced per cystocarp was counted after 24 h under a binocular microscope (i.e., mean over 10 independent counting of seawater drops of 50 μL). In the same way, 80 cm of mature thallus were cut from 20 random diploid tetrasporophytes (i.e., 4 cm from each tetrasporophyte) and these 80 thallus fragments were placed together in 30 mL of filtered seawater in a Falcon tube kept at 4 °C. The number of haploid tetraspores produced per centimeter of tetrasporophyte thallus was counted after 24 h under a binocular microscope (i.e., mean over 10 independent counting of seawater drops of 50 μL). Measures of the number of carpospores released per cystocarp and tetraspores released per centimeter of tetrasporophyte thallus were performed independently for Corral and Niebla and implemented after each sampling except in October 2009. For each haploid female gametophyte, the number of spores produced (pcarp) was inferred by multiplying the average number of diploid carpospores released per cystocarp by the average number of cystocarps per cm3 of thallus (assuming a branch diameter of 1 mm) and by the total volume of the female individual. For each diploid tetrasporophyte, the number of spores produced (ptet) was inferred by multiplying the average number of haploid tetraspores released by cm− 3 of thallus (assuming a branch diameter of 1 mm) by the total volume of the individual. Furthermore, tetraspores could be male (Mtet) or female (Ftet). We assumed an even sex ratio and thus pMtet = pFtet = ptet/2.
Spore survival rates
The dependency of spore survival from the local frond density was fit to a second-degree polynomial using the Iterative Reweighted Least Squares (IRLS) estimation method. The local frond density (Vp) was quantified by the sum of all frond volumes at each pool, yet, excluding the larger frond to avoid bias from exceptionally large fronds [15, 46]. The frond density was dependent on location and season. Since they were not numerically orthogonal to the factor density and did not increase the explanatory power of the model, the effects of these factors were not tested. Nevertheless, it was possible to compare between Corral and Niebla sites. The goodness-of-fit was estimated from χ2 tests with the significance corresponding to the probability of the curves not fitting the observations. The number of observations were i = 2 pools× 9 census at Corral, i = 3 pools× 9 census at Niebla and j = 3 parameters needed to be estimated, resulting in 14 = i-j-1 degrees of freedom for Corral and 23 = i-j-1 degrees of freedom for Niebla.
Correlation between vital rates and field abundances
We tested for the relation between the ploidy ratio of the abundances (i.e., the haploid-diploid ratio or H:D) and the ploidy ratio of the vital rates, the latter ratio requiring estimation according to the ploidy to which each vital rate is contributing. Thus, vital rates contributing to the haploids (production and survival of haploid tetraspores) must appear in the numerator whereas vital rates contributing to the diploids (production and survival of diploid carpospores) must appear in the denominator (see [40, 41, 42, 43]). Hence, the ratios used to compare these rates and relate them to the H:D were the ptet:pcarp, the stet:scarp and the RH:RD.
The direct use of the haploid-diploid ratio when testing and comparing the effects of its driving factors is inadequate because the addition of x haploid fronds to the numerator or of x diploid fronds to its denominator do not have symmetrical effects. Hence, the haploid-diploid ratio inevitably shows widely different sensitivities and elasticities to ecologically equivalent vital rates just because these contribute to different sides of the ratio. For this same reason the haploid-diploid ratio of a species cannot follow a normal distribution (or any symmetrical distribution for that matter) particularly when there is change in phase dominance among locations or seasons. Since statistical tests using the haploid-diploid ratio as dependent (response) variable are inadequate, the haploid-diploid ratio was replaced by the log(H:D) [40, 43, 47]. The point of such procedure is exemplified in the following text. Consider the situation (H:D0) with the abundances balanced at 1:1, the alternative H:DA unbalanced at 10:1 and the alternative H:DB unbalanced at 1:10. The direct use of the haploid-diploid ratio metric falsely suggests that the alternative A represents a change (A-0) of magnitude 9 whereas the alternative B represents a change (B-0) of magnitude 0.9. An honest comparison between the alternatives A and B requires the use of logarithms (e.g., [40, 43, 47]). In this example log10(1:1) = 0, log10(10:1) = 1 and log10(1:10) = − 1, revealing that the alternatives A and B represent changes of equal magnitude but opposite directions. The statistic log(H:D) may perfectly well follow a normal distribution without restrictions about which phase is dominant. Hence, in this work the haploid-diploid ratio of abundances and vital rates were always tested and plotted in logarithmic scales.
Results and discussion
Probability of fronds to become fecund
The probability of fronds becoming fecund (ρ) was size-dependent, with larger fronds generally fecund (i.e., ρ ≈ 1), and well fitted by Gompertz curves (Fig. 2). The exceptions were the haploid female gametophytes and the diploid tetrasporophytes at Niebla during the spring-summer. Their decreasing ρ was better fitted by quadratic functions. All these curves fitted the observations remarkably well (χ2 p < 0.007). Fecundity was highly seasonal: during the austral autumn and winter most fronds became fecund, even the small. On the other hand, the austral spring-summer was less favorable for becoming fecund. At Corral, many of the small and medium sized fronds - particularly of the haploid females and diploids - were not becoming fecund. At Niebla, even the large haploid females and diploids were not becoming fecund. The ρ was dependent on life cycle stage, with advantage for the haploid males. The χ2 tests showed that the Gompertz curves estimated for each stage were always different (χ2 p < 0.0002). However, during the autumn and winter, the differences among stages were mostly restricted to the smaller fronds and only during the spring-summer did they generalize to the full frond size range. This contrast among stages may represent a contrast between strategies for resource allocation in times of shortage or intense competition; with small and medium sized diploids and haploid females investing in survival, and haploid males investing in fecundity. Furthermore, our companion study about G. chilensis survival  revealed a low survival of males when compared to females and diploids, especially for small individuals. In fact, the haploid female (F), haploid male (M) and diploid tetrasporophyte (D) differentiation of survival  was perfectly symmetric to their differentiation of becoming fecund (ρ). This mirroring pattern between probabilities of survival and becoming fecund support the existence in the field of a trade-off between survival and reproduction [48, 49, 50] that had already been reported for G. chilensis reared in the laboratory . Within the long list of theoretical works exploring potential differences between phases in haploid-diploid organisms, Lewis  proposed that, when resources are scarce, haploids might benefit from having half the cost of production and upkeep of DNA than diploids. Lewis theory has been further developed into the “nutrient limitation hypothesis”  and this non-genetic explanation for the evolution of life cycles has been sustained by experimental studies showing that haploids grew faster than diploids when cultivated in nutrient-poor conditions . Resources become scarce under intense competition or when the adaptations required to overcome hydrodynamic stress, desiccation or herbivory are resource demanding. In all such cases the G. chilensis haploid females survived better than any other stage  while the haploid males had greater probability of becoming fecund than any other stage (this study). It is possible that resources saved in haploids by producing half the DNA are differently allocated depending on sex: to ensure a better survival in female and a higher fecundity in males.
Three-way ANOVA on the spore production of Gracilaria chilensis across the stages haploid females, haploid males and diploids; the seasons autumn, winter and spring-summer; and the pools Corral 1, Corral 2, Niebla 1, Niebla 2 and Niebla 3
Our results showed the negative effect of high frond densities on the survival of the spores and sporelings. The high density – low survival relation is well documented in algal species as a consequence of intraspecific competition, leading to the famous self-thinning rule [59, 60]. This negative effect has been reported in G. chilensis  and has even been observed between sporelings in other seaweed species . During our survey, at high frond densities, the increased mortality of settled spores was pronounced at the Niebla site for all spore types, while at the Corral site it was restricted to the haploid tetraspores (Fig. 4). As said above, even though both survey sites where located in the upper intertidal, they differ in terms of desiccation and UV stress levels during low tide. While, Niebla rock pools retain seawater during low tide protecting fronds from severe dehydration, the fronds at Corral dried on the flat bare rock. We propose that, at Corral, the positive effect of protection against desiccation and UV stress provided by the adult fronds override the negative effect of competition unless the stands were outstandingly crowded. Interestingly, we observed that whenever spore survival depended on competition with adult fronds (i.e., at high frond density), the carposporelings (diploids) outperformed the tetrasporelings (haploids). This advantage of the diploid over the haploid sporelings contrasts with results showing the advantage of G. chilensis adult haploid female fronds over the diploid fronds under the same stress from competition . These results could suggest the existence of maternal care by the haploid females. Indeed, females, by providing nutrients to their carpospores progeny, can lead to an advantage of diploid carpospores over haploid tetraspores under scarcity of resources. The maternal care by the haploid females providing nutrients and thus benefiting the production, development and germination of diploid carpospores has been reported in three other red algal species .
Our results also showed the negative effect of low frond densities on the survival of the spores and sporelings. Low frond densities have been shown to be stressful, exposing individuals to desiccation [8, 18, 22, 62, 63] or to hydrodynamic stress [8, 18, 21, 64], affecting the survival of intertidal algae (i.e., Allee effects). Our work showed that in Corral the diploid spores and sporelings survived better than the haploid spores when growing at low frond densities (Fig. 4). These differences in survival were observed during summer for the Corral algal stands (where G. chilensis dry on the flat bare rock during low tide). We propose that the advantage of diploid spores under these adverse conditions could also come from maternal care by the haploid female, who can pass-on to their diploid progeny the chemical compounds conferring resistance to UV and herbivory, that the sporelings are unable to produce and accumulate on their own. Supporting our hypothesis, the better survival of the G. chilensis adult haploid female fronds under desiccation and UV stress was also particularly evident at Corral during the summer  and has been linked to a possible accumulation of chemical compounds related to photoprotection [65, 66] and antioxidative enzymes . A better ability of the diploid carpospores to withstand UV radiation than the haploid tetraspores has been demonstrated in other red algae . Consistently, haploid females in red algae have been reported to present higher concentrations of protective chemical compounds within cystocarps than along the main thallus , a pattern that suggested the existence of a mechanism of strong protection of the cystocarps and diploid carpospores.
Factors determining the haploid:Diploid ratio of Gracilaria chilensis recruits
Perspective on haploid-diploid life cycle maintenance
Contrasting results about survival of the adult fronds of G. chilensis , with their fecundity and the survival of their spores (the present work) allow a more complete understanding of the species population dynamics. We propose that tetrasporophyte (diploid) fronds present a more r-oriented strategy. On the other hand, female gametophyte (haploid) fronds, seem to present a more K-oriented strategy; investing further resources in their survival, producing fewer spores, but investing in the survival of their carpospore (diploid) progeny through maternal care. The evolutionary stability of this life cycle suggests that, for this type of organisms in their habitat, complementary ploidy phases with different life strategies has more success than a monophasic alternative.
This research was supported by CONICYT (Fondo Nacional de Desarrollo Científico y Tecnológico FONDECYT) under grant number 1090360 and 1170541. VV was funded by ERDF Funds of the Competitiveness Factors Operational Programme - COMPETE and national funds of the FCT - Foundation for Science and Technology under the project UID/EEA/50009/2013. AHE was supported by fellowships SFRH/BPD/63703/2009, SFRH/BPD/107878/2015 and UID/Multi/04326/2016 of the National Science Foundation FCT of Portugal. The funders took no part in the design of the study, in the collection, analysis, and interpretation of data, and in writing the manuscript.
VV developed the models and software, designed and performed the data analysis, interpreted the results and wrote the article. AE interpreted the results and reviewed the article. OH designed and performed the experiments, and reviewed the article. MLG designed and performed the experiments, interpreted the results and reviewed the article. All authors read and approved the final manuscript.
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