The role of the COP1, SPA, and PIF proteins in plant photomorphogenesis

  • O. G. Smirnova
  • I. L. Stepanenko
  • V. K. Shumnyi
Article

Abstract

Molecular systems governing light-signal transduction at early stages of plant development are reviewed. Possible pathways for light-signal transduction via photoreceptors (phytochromes), as well as the functions of positive and negative regulators, are considered. Current notions of mechanisms responsible for photomorphogenesis repression in the dark and in the light are discussed.

Keywords

SPA proteins COP1 PIF transcription factors photomorphogenesis negative regulation 

References

  1. 1.
    Kreslavskii, V.D. and Allakhverdiev, S.I., Biol. Membr., 2006, vol. 23, no. 4, p. 275.Google Scholar
  2. 2.
    Fedorenko, O.M. and Savushkin, A.I., Usp. Sovrem. Biol., 2006, vol. 126, no. 2, p. 201.Google Scholar
  3. 3.
    Tsygankova, V.A., Galkina, L.A., Musatenko, L.I., and Sytnik, K.M., Biopolym. Cell, 2004, vol. 20, no. 6, p. 451.Google Scholar
  4. 4.
    Al-Sady, B., Ni, W., Kircher, S., Schafer, E., and Quail, P.H., Mol. Cell, 2006, vol. 23, no. 3, p. 43.Google Scholar
  5. 5.
    Ang, L.H., Chattopadhyay, S., Wei, N., Oyama, T., Okada, K., Batschauer, A., and Deng, X.W., Mol. Cell, 1998, vol. 1, no. 2, p. 213.PubMedGoogle Scholar
  6. 6.
    Bae, G. and Choi, G., Annu. Rev. Plant Biol., 2008, vol. 59, p. 281.PubMedGoogle Scholar
  7. 7.
    Ballesteros, M.L., Bolle, C., Lois, L.M., Moore, J.M., Vielle-Calzada, J.P., Grossniklaus, U., and Chua, N.H., Genes Dev., 2001, vol. 15, no. 19, p. 2613.PubMedGoogle Scholar
  8. 8.
    Bauer, D., Viczian, A., Kircher, S., Nobis, T., Nitschke, R., Kunkel, T., Panigrahi, K.C., Adám, E., Fejes, E., Schäfer, E., and Nagy, F., Plant Cell, 2004, vol. 16, no. 6, p. 1433.PubMedGoogle Scholar
  9. 9.
    Baumgardt, R.L., Oliverio, K.A., Casal, J.J., and Hoecker, U., Planta, 2002, vol. 215, no. 5, p. 745.PubMedGoogle Scholar
  10. 10.
    Boccalandro, H.E., Rossi, M.C., Saijo, Y., Deng, X.W., and Casal, J.J., Plant Mol. Biol., 2004, vol. 56, no. 6, p. 905.PubMedGoogle Scholar
  11. 11.
    Chamovitz, D.A., EMBO Rep., 2009, vol. 10, no. 4, p. 352.PubMedGoogle Scholar
  12. 12.
    Chang, C.S., Li, Y.H., Chen, L.T., Chen, W.C., Hsieh, W.P., Shin, J., Jane, W.N., Chou, S.J., Choi, G., Hu, J.M., Somerville, S., and Wu, S.H., Plant J., 2008, vol. 54, no. 2, p. 205.PubMedGoogle Scholar
  13. 13.
    Chattopadhyay, S., Ang, L.H., Puente, P., Deng, X.W., and Wei, N., Plant Cell, 1998, vol. 10, no. 5, p. 673.PubMedGoogle Scholar
  14. 14.
    Clack, T., Shokry, A., Moffet, M., Liu, P., Faul, M., and Sharrock, R.A., Plant Cell, 2009, vol. 21, no. 3, p. 786.PubMedGoogle Scholar
  15. 15.
    Datta, S., Johansson, H., Hettiarachchi, C., Irigoyen, M.L., Desai, M., Rubio, V., and Holm, M., Plant Cell, 2008, vol. 20, no. 9, p. 2324.PubMedGoogle Scholar
  16. 16.
    Dieterle, M., Buche, C., Schäfer, E., and Kretsch, T., Plant Physiol., 2003, vol. 133, no. 4, p. 1557.PubMedGoogle Scholar
  17. 17.
    Duek, P.D. and Fankhauser, C., Plant J., 2003, vol. 34, no. 6, p. 827.PubMedGoogle Scholar
  18. 18.
    Duek, P.D., Elmer, M.V., van Oosten, V.R., and Fankhauser, C., Curr. Biol., 2004, vol. 14, no. 24, p. 2296.PubMedGoogle Scholar
  19. 19.
    Fairchild, C.D., Schumaker, M.A., and Quail, P.H., Genes Dev., 2000, vol. 14, no. 18, p. 2377.PubMedGoogle Scholar
  20. 20.
    Fittinghoff, K., Laubinger, S., Nixdorf, M., Fackendahl, P., Baumgardt, R.L., Batschauer, A., and Hoecker, U., Plant J., 2006, vol. 47, no. 4, p. 577.PubMedGoogle Scholar
  21. 21.
    Franklin, K.A., Praekelt, U., Stoddart, W.M., Billingham, O.E., Halliday, K.J., and Whitelam, G.C., Plant Physiol., 2003, vol. 131, no. 3, p. 1340.PubMedGoogle Scholar
  22. 22.
    Franklin, K.A. and Quail, P.H., J. Exp. Bot., 2010, vol. 61, no. 1, p. 11.PubMedGoogle Scholar
  23. 23.
    Gao, Y., Li, J., Strickland, E., Hua, S., Zhao, H., Chen, Z., Qu, L., and Deng, X.W., Plant. Mol. Biol., 2004, vol. 54, no. 5, p. 683.PubMedGoogle Scholar
  24. 24.
    Genoud, T., Schweizer, F., Tscheuschler, A., Debrieux, D., Casal, J.J., Schäfer, E., Hiltbrunner, A., and Fankhauser, C., PLoS Genet., 2008, vol. 4, no. 8, p. e1000143.PubMedGoogle Scholar
  25. 25.
    Hardtke, C.S. and Deng, X.W., Plant Physiol., 2000, vol. 124, no. 4, p. 1548.PubMedGoogle Scholar
  26. 26.
    Hardtke, C.S., Gohda, K., Osterlund, M.T., Oyama, T., Okada, K., and Deng, X.W., EMBO J., 2000, vol. 19, no. 18, p. 4997.PubMedGoogle Scholar
  27. 27.
    Hardtke, C.S., Okamoto, H., Stoop-Myer, C., and Deng, X.W., Plant J., 2002, vol. 30, no. 4, p. 385.PubMedGoogle Scholar
  28. 28.
    Hiltbrunner, A., Viczian, A., Bury, E., Tscheuschler, A., Kircher, S., Toth, R., Honsberger, A., Nagy, F., Fankhauser, C., and Schafer, E., Curr. Biol., 2005, vol. 15, no. 23, p. 2125.PubMedGoogle Scholar
  29. 29.
    Hiltbrunner, A., Tscheuschler, A., Viczian, A., Kunkel, T., Kircher, S., and Schafer, E., Plant Cell Physiol., 2006, vol. 47, no. 8, p. 1023.PubMedGoogle Scholar
  30. 30.
    Hoecker, U., Tepperman, J.M., and Quail, P.H., Science, 1999, vol. 284, no. 5413, p. 496.PubMedGoogle Scholar
  31. 31.
    Hoecker, U. and Quail, P.H., J. Biol. Chem., 2001, vol. 276, no. 41, p. 38173.PubMedGoogle Scholar
  32. 32.
    Hong, S.H., Kim, H.J., Ryu, J.S., Choi, H., Jeong, S., Shin, J., Choi, G., and Nam, H.G., Plant J., 2008, vol. 55, no. 3, p. 361.PubMedGoogle Scholar
  33. 33.
    Hornitschek, P., Lorrain, S., Zoete, V., Michielin, O., and Fankhauser, C., EMBO J., 2009, vol. 28, no. 24, p. 3893.PubMedGoogle Scholar
  34. 34.
    Huq, E. and Quail, P.H., EMBO J., 2002, vol. 21, no. 10, p. 2441.PubMedGoogle Scholar
  35. 35.
    Huq, E., Al-Sady, B., Hudson, M., Kim, C., Apel, K., and Quail, P.H., Science, 2004, vol. 305, no. 5692, p. 1937.PubMedGoogle Scholar
  36. 36.
    Hwang, Y.S. and Quail, P.H., Plant Cell Physiol., 2008, vol. 49, no. 4, p. 501.PubMedGoogle Scholar
  37. 37.
    Jang, I.C., Yang, J.Y., Seo, H.S., and Chua, N.H., Genes Dev., 2005, vol. 19, no. 5, p. 593.PubMedGoogle Scholar
  38. 38.
    Jang, I.C., Yang, S.W., Yang, J.Y., and Chua, N.H., Genes Dev., 2007, vol. 21, no. 16, p. 2100.PubMedGoogle Scholar
  39. 39.
    Jonassen, E.M., Lea, U.S., and Lillo, C., Planta, 2008, vol. 227, no. 3, p. 559.PubMedGoogle Scholar
  40. 40.
    Josse, E.M. and Halliday, K.J., Curr. Biol., 2008, vol. 18, no. 24, p. R1144.PubMedGoogle Scholar
  41. 41.
    Kevei, E., Schafer, E., and Nagy, F., J. Exp. Bot., 2007, vol. 58, no. 12, p. 3113.PubMedGoogle Scholar
  42. 42.
    Khanna, R., Huq, E., Kikis, E.A., Al-Sady, B., Lanzatella, C., and Quail, P.H., Plant Cell, 2004, vol. 16, no. 11, p. 3033.PubMedGoogle Scholar
  43. 43.
    Khanna, R., Shen, Y., Toledo-Ortiz, G., Kikis, E.A., Johannesson, H., Hwang, Y.S., and Quail, P.H., Plant Cell, 2006, vol. 18, no. 9, p. 2157.PubMedGoogle Scholar
  44. 44.
    Khanna, R., Shen, Y., Marion, C.M., Tsuchisaka, A., Theologis, A., Schafer, E., and Quail, P.H., Plant Cell, 2007, vol. 19, no. 12, p. 3915.PubMedGoogle Scholar
  45. 45.
    Kikis, E.A., Oka, Y., Hudson, M.E., Nagatani, A., and Quail, P.H., PLoS Genet., 2009, vol. 5, no. 1, p. e10000352.Google Scholar
  46. 46.
    Kim, J., Yi, H., Choi, G., Shin, B., Song, P.S., and Choi, G., Plant Cell, 2003, vol. 15, no. 10, p. 2399.PubMedGoogle Scholar
  47. 47.
    Laubinger, S. and Hoecker, U., Plant J., 2003, vol. 35, no. 3, p. 373.PubMedGoogle Scholar
  48. 48.
    Laubinger, S., Fittinghoff, K., and Hoecker, U., Plant Cell, 2004, vol. 16, no. 9, p. 2293.PubMedGoogle Scholar
  49. 49.
    Lee, J., He, K., Stolc, V., Lee, H., Figueroa, P., Gao, Y., Tongprasit, W., Zhao, H., Lee, I., and Deng, X.W., Plant Cell, 2007, vol. 19, no. 3, p. 731.PubMedGoogle Scholar
  50. 50.
    Leivar, P., Monte, E., Al-Sady, B., Carle, C., Storer, A., Alonso, J.M., Ecker, J.R., and Quail, P.H., Plant Cell, 2008, vol. 20, no. 2, p. 337.PubMedGoogle Scholar
  51. 51.
    Leivar, P., Monte, E., Oka, Y., Liu, T., Carle, C., Castillon, A., Huq, E., and Quail, P.H., Curr. Biol., 2008, vol. 18, no. 23, p. 1815.PubMedGoogle Scholar
  52. 52.
    Leivar, P., Tepperman, J.M., Monte, E., Calderon, R.H., Liu, T.L., and Quail, P.H., Plant Cell, 2009, vol. 21, no. 11, p. 3535.PubMedGoogle Scholar
  53. 53.
    Lin, R. and Wnag, H., Plant Physiol., 2004, vol. 136, no. 4, p. 4010.PubMedGoogle Scholar
  54. 54.
    Lin, R., Ding, L., Casola, C., Ripoll, D.R., Feschotte, C., and Wang, H., Science, 2007, vol. 318, no. 5854, p. 1302.PubMedGoogle Scholar
  55. 55.
    Lin, R., Teng, Y., Park, H.J., Ding, L., Black, C., Fang, P., and Wang, H., Plant Physiol., 2008, vol. 148, no. 2, p. 981.PubMedGoogle Scholar
  56. 56.
    Lorrain, S., Allen, T., Duek, P.D., Whitelam, G.C., and Fankhauser, C., Plant J., 2008, vol. 53, no. 2, p. 312.PubMedGoogle Scholar
  57. 57.
    Lorrain, S., Trevisan, M., Pradervand, S., and Fankhauser, C., Plant J., 2009, vol. 60, no. 3, p. 449.PubMedGoogle Scholar
  58. 58.
    Ma, L., Li, J., Qu, L., Chen, Z., Zhao, H., and Deng, X.W., Plant Cell, 2001, vol. 13, p. 2589.PubMedGoogle Scholar
  59. 59.
    Ma, L., Gao, Y., Qu, L., Chen, Z., Li, J., Zhao, H., and Deng, X.W., Plant Cell, 2002, vol. 14, no. 10, p. 2383.PubMedGoogle Scholar
  60. 60.
    Ma, L., Sun, N., Liu, X., Jiao, Y., Zhao, H., and Deng, X.W., Plant Physiol., 2005, vol. 138, no. 1, p. 80.PubMedGoogle Scholar
  61. 61.
    MartÍnez-GarcÍa, J.F., Huq, E., and Quail, P.H., Science, 2000, vol. 288, no. 5467, p. 859.PubMedGoogle Scholar
  62. 62.
    McNellis, T.W., von Arnim, A.G., Araki, T., Komeda Y., Misera S., and Deng X.W, Plant Cell, 1994, vol. 6, no. 4, p. 487.PubMedGoogle Scholar
  63. 63.
    McNellis, T.W., von Arnim, A.G., and Deng, X.W., Plant Cell, 1994, vol. 6, no. 10, p. 1391.PubMedGoogle Scholar
  64. 64.
    Mcnellis, T.W. and Deng, X.W., Plant Cell, 1995, vol. 7, no. 11, p. 1749.PubMedGoogle Scholar
  65. 65.
    Monte, E., Tepperman, J.M., Al-Sady, B., Kaczorowski, K.A., Alonso, J.M., Ecker, J.R., Li, X., Zhang, Y., and Quail, P.H., Proc. Natl. Acad. Sci. USA, 2004, vol. 101, no. 46, p. 16091.PubMedGoogle Scholar
  66. 66.
    Monte, E., Al-Sady, B., Leivar, P., and Quail, P.H., J. Exp. Bot., 2007, vol. 58, no. 12, p. 3125.PubMedGoogle Scholar
  67. 67.
    Moon, J., Zhu, L., Shen, H., and Huq, E., Proc. Natl. Acad. Sci. USA, 2008, vol. 105, no. 27, p. 9433.PubMedGoogle Scholar
  68. 68.
    Müller, R., Fernández, A.P., Hiltbrunner, A., Schäfer, E., and Kretsch, T., Plant Physiol., 2009, vol. 150, no. 3, p. 1297.PubMedGoogle Scholar
  69. 69.
    Nixdorf, M. and Hoecker, U., Planta, 2010, vol. 231, no. 4, p. 825.PubMedGoogle Scholar
  70. 70.
    Oh, E., Kim, J., Park, E., Kim, J.I., Kagn C., and Choi G., Plant Cell, 2004, vol. 16, no. 11, p. 3045.PubMedGoogle Scholar
  71. 71.
    Oh, E., Yamaguchi, S., Kamiya, Y., Bae, G., Chung, W.I., and Choi, G., Plant J., 2006, vol. 47, no. 1, p. 124.PubMedGoogle Scholar
  72. 72.
    Osterlund, M.T. and Deng, X.W., Plant J., 1998, vol. 16, no. 2, p. 201.PubMedGoogle Scholar
  73. 73.
    Osterlund, M.T., Hardtke, C.S., Wei N., and Deng X.W., Nature, 2000, vol. 405, no. 6785, p. 462.PubMedGoogle Scholar
  74. 74.
    Parks, B.M., Hoecker, U., and Spalding, E.P., Plant Physiol., 2001, vol. 126, no. 3, p. 1291.PubMedGoogle Scholar
  75. 75.
    Park, E., Kim, J., Lee, Y., Shin, J., Oh, E., Chung, W.I., Liu, J.R., and Choi, G., Plant Cell Physiol., 2004, vol. 45, no. 8, p. 968.PubMedGoogle Scholar
  76. 76.
    Phee, B.K., Kim, J.I., Shin, D.H., Yoo, J., Park, K.J., Han, Y.J., Kwon, Y.K., Cho, M.H., Jeon, J.S., Bhoo, S.H., and Hahn, T.R., Biochem. J., 2008, vol. 415, no. 2, p. 247.PubMedGoogle Scholar
  77. 77.
    Rockwell, N.C., Su, Y.S., and Lagarias, J.C., Annu. Rev. Plant Biol., 2006, vol. 57, p. 837.PubMedGoogle Scholar
  78. 78.
    Rösler, J., Klein, I., and Zeidler, M., Proc. Natl. Acad. Sci. USA, 2007, vol. 104, no. 25, p. 10737.PubMedGoogle Scholar
  79. 79.
    Saijo, Y., Sullivan, J.A., Wang, H., Yang, J., Shen, Y., Rubio, V., Ma, L., Hoecker, U., and Deng, X.W., Genes Dev., 2003, vol. 17, no. 21, p. 2642.PubMedGoogle Scholar
  80. 80.
    Saijo, Y., Zhu, D., Li, J., Rubio, V., Zhou, Z., Shen, Y., Hoecker, U., Wang, H., and Deng, X.W., Mol. Cell, 2008, vol. 31, no. 4, p. 607.PubMedGoogle Scholar
  81. 81.
    Seo, H.S., Yang, J.Y., Ishikawa, M., Bolle, C., Ballesteros, M.L., and Chua N.H, Nature, 2003, vol. 423, no. 6943, p. 995.PubMedGoogle Scholar
  82. 82.
    Seo, H.S., Watanabe, E., Tokutomi, S., Nagatani, A., and Chua, N.H., Genes Dev., 2004, vol. 18, no. 6, p. 617.PubMedGoogle Scholar
  83. 83.
    Serino, G. and Deng, X.W., Annu. Rev. Plant Biol., 2003, vol. 54, p. 165.PubMedGoogle Scholar
  84. 84.
    Shen, H., Moon, J., and Huq, E., Plant J., 2005, vol. 44, no. 6, p. 1023.PubMedGoogle Scholar
  85. 85.
    Shen, Y., Khanna, R., Carle, C.M., and Quail, P.H., Plant Physiol., 2007, vol. 145, no. 3, p. 1043.PubMedGoogle Scholar
  86. 86.
    Shen, H., Zhu, L., Castillon, A., Majee, M., Downie, B., and Huq, E., Plant Cell, 2008, vol. 20, no. 6, p. 1586.PubMedGoogle Scholar
  87. 87.
    Shen, Y., Zhou, Z., Feng, S., Li, J., Tan-Wilson, A., Qu, L.J., Wang, H., and Deng, X.W., Plant. Cell, 2009, vol. 21, no. 2, p. 494.PubMedGoogle Scholar
  88. 88.
    Shin, J., Park, E., and Choi, G., Plant J., 2007, vol. 49, no. 6, p. 981.PubMedGoogle Scholar
  89. 89.
    Shin, J., Kim, K., Kang, H., Zulfugarov, I.S., Bae, G., Lee, C.H., Lee, D., and Choi, G., Proc. Natl. Acad. Sci. USA, 2009, vol. 106, no. 18, p. 7660.PubMedGoogle Scholar
  90. 90.
    Soh, M.S., Kim, Y.M., Han, S.J., and Song, P.S., Plant Cell, 2000, vol. 12, no. 11, p. 2061.PubMedGoogle Scholar
  91. 91.
    Song, Y.H., Yoo, C.M., Hong, A.P., Kim, S.H., Jeong, H.J., Shin, S.Y., Kim, H.J., Yun, D.J., Lim, C.O., Bahk, J.D., Lee, S.Y., Nagao, R.T., Key, J.L., and Hong, J.C., Plant Physiol., 2008, vol. 146, no. 4, p. 1862.PubMedGoogle Scholar
  92. 92.
    Stacey, M.G., Kopp, O.R., Kim, T.H., and von Arnim, A.G., Plant Physiol., 2000, vol. 124, no. 3, p. 979.PubMedGoogle Scholar
  93. 93.
    Stephenson, P.G., Fankhauser, C., and Terry, M.J., Proc. Nat. Acad. Sci. USA, 2009, vol. 106, no. 18, p. 7654.PubMedGoogle Scholar
  94. 94.
    Tepperman, J.M., Zhu, T., Chang, H.S., Wnag, X., and Quail, P.H., Proc. Natl. Acad. Sci. USA, 2001, vol. 98, no. 16, p. 9437.PubMedGoogle Scholar
  95. 95.
    Tepperman, J.M., Hudson, M.E., Khanna, R., Zhu, T., Chang, S.H., Wang, X., and Quail, P.H., Plant J., 2004, vol. 38, no. 5, p. 725.PubMedGoogle Scholar
  96. 96.
    Tepperman, J.M., Hwang, Y.S., and Quail, P.H., Plant J., 2006, vol. 48, no. 5, p. 728.PubMedGoogle Scholar
  97. 97.
    von Arnim, A.G. and Deng, X.W., Cell, 1994, vol. 79, no. 6, p. 1035.Google Scholar
  98. 98.
    Wang, X., Li, W., Piqueras, R., Cao, K., Deng X.W., and Wei, N., Plant J., 2009, vol. 58, no. 4, p. 655.PubMedGoogle Scholar
  99. 99.
    Yang, J., Lin, R., Hoecker, U., Liu, B., Xu, L., and Wang, H., Plant J., 2005, vol. 43, no. 1, p. 131.PubMedGoogle Scholar
  100. 100.
    Yang, J., Lin, R., Sullivan, J., Hoecker, U., Liu, B., Xu, L., Deng, X.W., and Wang, H., Plant Cell, 2005, vol. 17, no. 3, p. 804.PubMedGoogle Scholar
  101. 101.
    Yang, J. and Wang, H., Plant J., 2006, vol. 47, no. 4, p. 564.PubMedGoogle Scholar
  102. 102.
    Yang, S.W., Jang, I.C., Henriques, R., and Chua, N.H., Plant Cell, 2009, vol. 21, no. 5, p. 1341.PubMedGoogle Scholar
  103. 103.
    Zhou, Q., Hare, P.D., Yang, S.W., Zeidler, M., Huang, L.F., and Chua, N.H., Plant J., 2005, vol. 43, no. 3, p. 356.PubMedGoogle Scholar
  104. 104.
    Zhu, Y., Tepperman, J.M., Fairchild, C.D., and Quail, P.H., Proc. Natl. Acad. Sci. USA, 2000, vol. 97, no. 24, p. 13419.PubMedGoogle Scholar
  105. 105.
    Zhu, D., Maier, A., Lee, J.H., Laubinger, S., Saijo, Y., Wang, H., Qu, L.J., Hoecker U., and Deng, X.W., Plant Cell, 2008, vol. 20, no. 9, p. 2307.PubMedGoogle Scholar

Copyright information

© Pleiades Publishing, Ltd. 2011

Authors and Affiliations

  • O. G. Smirnova
    • 1
  • I. L. Stepanenko
    • 1
    • 2
  • V. K. Shumnyi
    • 1
    • 2
  1. 1.Institute of Cytology and Genetics, Siberian BranchRussian Academy of SciencesNovosibirskRussia
  2. 2.Novosibirsk State UniversityNovosibirskRussia

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