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Russian Journal of Bioorganic Chemistry

, Volume 45, Issue 6, pp 656–661 | Cite as

Synthesis of Random DNA Libraries for In Vitro Selection and Analysis of Their Nucleotide Composition

  • A. S. DavydovaEmail author
  • O. A. Krasheninina
  • A. E. Tupikin
  • M. R. Kabilov
  • A. G. Venyaminova
  • M. A. Vorobyeva
Article
  • 11 Downloads

Abstract

Aptamers are DNA or RNA molecules that specifically bind certain targets with high affinity due to the formation of unique spatial structures. Aptamers with specified properties could be obtained from combinatorial libraries of nucleic acids by in vitro selection procedure. Here, we optimized conditions of chemical synthesis of DNA library on the automated ASM-800 DNA/RNA synthesizer. Enzymatic hydrolysis and high-throughput sequencing methods were used to analyze compositions of synthesized combinatorial libraries. The DNA library generated under the chosen conditions is characterized by the sufficiently uniform randomization and can be applied for the in vitro selection.

Keywords:

SELEX combinatorial libraries of nucleic acids solid-phase synthesis high throughput sequencing 

Notes

FUNDING

The work was supported by the Russian Scientific Foundation, project no. 16-14-10296 and by Russian State funded budget project No. АААА-А17-117020210021-7 to ICBFM SB RAS.

COMPLIANCE WITH ETHICAL STANDARDS

This article does not contain any studies involving animals or human participants performed by any of the authors.

Conflict of Interests

Authors declare that they have no conflicts of interests.

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Copyright information

© Pleiades Publishing, Ltd. 2019

Authors and Affiliations

  • A. S. Davydova
    • 1
    Email author
  • O. A. Krasheninina
    • 1
  • A. E. Tupikin
    • 1
  • M. R. Kabilov
    • 1
  • A. G. Venyaminova
    • 1
  • M. A. Vorobyeva
    • 1
  1. 1.Institute of Chemical Biology and Fundamental Medicine SB RASNovosibirskRussia

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